Transcriptomes of the anther sporophyte: Availability and uses

Plant and Cell Physiology

Volumn 52, Issue 9, 2011, Pages 1459-1466

  Huang, Ming Der ^a   Hsing, Yue Ie Caroline ^a   Huang, Anthony H C ^a,b  

^a INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Anther; Anther development; Anther transcripts; Sporophyte transcripts; Tapetum; Transcriptomes

Indexed keywords

TRANSCRIPTOME;

ARABIDOPSIS; DNA SEQUENCE; FLOWER; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETICS; MAIZE; METABOLOMICS; METHODOLOGY; POLLEN; PROTEOMICS; REVIEW;

ARABIDOPSIS; FLOWERS; GENE EXPRESSION REGULATION, PLANT; GENE REGULATORY NETWORKS; METABOLOMICS; POLLEN; PROTEOMICS; SEQUENCE ANALYSIS, DNA; TRANSCRIPTOME; ZEA MAYS;

ARABIDOPSIS; CHLOROCRAMBE HASTATA; ZEA MAYS;

EID: 80052904933     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pcr088     Document Type: Review

References (54)

1. Amagai, M., Ariizumi, T., Endo, M., Hatakeyama, K., Kuwata, C., Shibata, D. et al. (2003) Identification of anther-specific genes in a cruciferous model plant, Arabidopsis thaliana, by using a combination of Arabidopsis macroarray and mRNA derived from Brassica oleracea. Sex. Plant Reprod. 15: 213-220. (Pubitemid 36198798)
2. Ariizumi, T. and Toriyama, K. (2011) Genetic regulation of sporopol-lenin synthesis and pollen exine development. Annu. Rev. Plant Biol. 62: 437-460.
3. Brady, S.M., Song, S., Dhugga, K.S., Rafalski, J.A. and Benfey, P.N. (2007) Combining expression and comparative evolutionary analysis. The COBRA gene family. Plant Physiol. 143: 172-187. (Pubitemid 46133627)
4. Deveshwar, P., Bovill, W.D., Sharma, R., Able, J.A. and Kapoor, S. (2011) Analysis of anther transcriptomes to identify genes contributing to meiosis and male gametophyte development in rice. BMC Plant Biol. 11: 78.
5. Endo, M., Matsubara, H., Kokubun, T., Masuko, H., Takahata, Y., Tsuchiya, T. et al. (2002) The advantages of cDNA microarray as an effective tool for identification of reproductive organ-specific genes in a model legume, Lotus japonicus. FEBS Lett. 514: 229-237. (Pubitemid 34273945)
6. Endo, M., Tsuchiya, T., Saito, H., Matsubara, H., Hakozaki, H., Masuko, H. et al. (2004) Identification and molecular characterization of novel anther-specific genes in Oryza sativa L. by using cDNA microarray. Genes Genet. Syst. 79: 213-226. (Pubitemid 39469693)
7. Endo, M., Tsuchiya, T., Hamada, K., Kawamura, S., Yano, K., Ohshima, M. et al. (2009) High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development. Plant Cell Physiol. 50: 1911-1922.
8. Fujioka, T., Kaneko, F., Kazama, T., Suwabe, K., Suzuki, G., Makino, A. et al. (2008) Identification of small RNAs in late developmental stage of rice anthers. Genes Genet. Syst. 83: 281-284.
9. Fujita, M., Horiuchi, Y., Ueda, Y., Mizuta, Y., Kubo, T., Yano, K. et al. (2010) Rice expression atlas in reproductive development. Plant Cell Physiol. 51: 2060-2081.
10. Grienenberger, E., Kim, S.S., Lallemand, B., Geoffroy, P., Heintz, D., de Souza, C.A. et al. (2010) Analysis of TETRAKETIDE alpha-PYRONE REDUCTASE function in Arabidopsis thaliana reveals a previously unknown, but conserved, biochemical pathway in sporopollenin monomer biosynthesis. Plant Cell 22: 4067-4083.
11. Goldberg, R.B., Beals, T.P. and Sanders, P.M. (1993) Anther development: basic principles and practical applications. Plant Cell 5: 1217-1229. (Pubitemid 2001858)
12. Hesse, M., Pacini, E. and Willemse, M. (1993) The Tapetum. In Cytology, Function, Biochemistry and Evolution. Springer-Verlag, New York.
13. Hihara, Y., Hara, C. and Uchimiya, H. (1996) Isolation and characterization of two cDNA clones for mRNAs that are abundantly expressed in immature anthers of rice (Oryza sativa L.). Plant Mol. Biol. 30: 1181-1193. (Pubitemid 26310789)
14. Hirano, K., Aya, K., Hobo, T., Sakakibara, H., Kojima, M., Shim, R.A. et al. (2008) Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice. Plant Cell Physiol. 49: 1429-1450.
15. Hobo, T., Suwabe, K., Aya, K., Suzuki, G., Yano, K., Ishimizu, T. et al. (2008) Various spatiotemporal expression profiles of anther-expressed genes in rice. Plant Cell Physiol. 49: 1417-1428.
16. Hsieh, K. and Huang, A.H. (2007) Tapetosomes in Brassica tapetum accumulate endoplasmic reticulum-derived flavonoids and alkanes for delivery to the pollen surface. Plant Cell 19: 582-596. (Pubitemid 46941680)
17. Huang, M.D., Wei, F.J., Wu, C.C., Hsing, Y.I. and Huang, A.H. (2009) Analyses of advanced rice anther transcriptomes reveal global tap-etum secretory functions and potential proteins for lipid exine formation. Plant Physiol. 149: 694-707.
18. Huysmans, S., El-Ghazaly, G. and Smets, E. (1998) Orbicules in angio-sperms: morphology, function, distribution, and relation with tap-etum types. Bot. Rev. 64: 240-272.
19. Johnson, C., Kasprzewska, A., Tennessen, K., Fernandes, J., Nan, G.L., Walbot, V. et al. (2009) Clusters and superclusters of phased small RNAs in the developing inflorescence of rice. Genome Res. 19: 1429-1440.
20. Kader, J.C. (1996) Lipid-transfer proteins in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 627-654.
21. Kaul, M.L.H. (1988) In Male Sterility in Higher Plants. Springer-Verlag, Berlin.
22. Kerim, T., Imin, N., Weinman, J.J. and Rolfe, B.G. (2003) Proteome analysis of male gametophyte development in rice anthers. Proteomics 3: 738-751. (Pubitemid 36570263)
23. Kim, H.U., Hsieh, K., Ratnayake, C. and Huang, A.H. (2002) A novel group of oleosins is present inside the pollen of Arabidopsis. J. Biol. Chem. 277: 22677-22684. (Pubitemid 34967246)
24. Kim, S.S., Grienenberger, E., Lallemand, B., Colpitts, C.C., Kim, S.Y., de Souza, C.A. et al. (2010) LAP6/POLYKETIDE SYNTHASE A and LAP5/POLYKETIDE SYNTHASE B encode hydroxyalkyl alpha-pyrone synthases required for pollen development and sporo-pollenin biosynthesis in Arabidopsis thaliana. Plant Cell 22: 4045-4066.
25. Koltunow, A.M., Truettner, J., Cox, K.H., Wallroth, M. and Goldberg, R.B. (1990) Different temporal and spatial gene expression patterns occur during anther development. Plant Cell 2: 1201-1224. (Pubitemid 120015470)
26. Kriete, G., Niehaus, K., Perlick, A.M., Puhler, A. and Broer, I. (1996) Male sterility in transgenic tobacco plants induced by tapetum-specific deacetylation of the externally applied non-toxic compound N-acetyl-L- phosphinothricin. Plant J. 9: 809-818. (Pubitemid 126661061)
27. Li, F.S., Iacuone, S. and Parish, R.W. (2007) Suppression and restoration of male fertility using a transcription factor. Plant Biotechnol. J. 5: 297-312.
28. Lu, X.C., Gong, H.Q., Huang, M.L., Bai, S.L., He, Y.B., Mao, X. et al. (2006) Molecular analysis of early rice stamen development using organ-specific gene expression profiling. Plant Mol. Biol. 61: 845-861. (Pubitemid 44268251)
29. Ma, J., Duncan, D., Morrow, D.J., Fernandes, J. and Walbot, V. (2007) Transcriptome profiling of maize anthers using genetic ablation to analyze pre-meiotic and tapetal cell types. Plant J. 50: 637-648. (Pubitemid 46733752)
30. Ma, J., Morrow, D.J., Fernandes, J. and Walbot, V. (2006) Comparative profiling of the sense and antisense transcriptome of maize lines. Genome Biol. 7: R22.
31. Ma, J., Skibbe, D.S., Fernandes, J. and Walbot, V. (2008) Male reproductive development: gene expression profiling of maize anther and pollen ontogeny. Genome Biol. 9: R181.
32. Mandaokar, A., Thines, B., Shin, B., Lange, B.M., Choi, G., Koo, Y.J. et al. (2006) Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling. Plant J. 46: 984-1008.
33. Mariani, C., Gossele, V., De Beuckeleer, M., De Block, M., Goldberg, R.B., De Greef, W. et al. (1992) A chimaeric ribonuclease-inhibitor gene restores fertility to male sterile plants. Nature 357: 384-387.
34. Millar, A.A. and Gubler, F. (2005) The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development. Plant Cell 17: 705-721. (Pubitemid 43138215)
35. Murgia, M., Charzynska, M., Rougier, M. and Cresti, M. (1991) Secretory tapetum of Brassica oleracea L.: polarity and ultrastruc-tural features. Sex. Plant Reprod. 4: 28-35.
36. Murmu, J., Bush, M.J., DeLong, C., Li, S., Xu, M., Khan, M. et al. (2010) Arabidopsis basic leucine-zipper transcription factors TGA9 and TGA10 interact with floral glutaredoxins ROXY1 and ROXY2 and are redundantly required for anther development. Plant Physiol. 154: 1492-1504.
37. Platt, K.A., Huang, A.H.C. and Thomson, W.W. (1998) Ultrastructural study of lipid accumulation in tapetal cells of Brassica napus L. cv. Westar during microsporogenesis. Int. J. Plant Sci. 159: 724-737. (Pubitemid 28476481)
38. Rubinelli, P., Hu, Y. and Ma, H. (1998) Identification, sequence analysis and expression studies of novel anther-specific genes of Arabidopsis thaliana. Plant Mol. Biol. 37: 607-619. (Pubitemid 28324445)
39. Sanders, P.M., Bui, A.Q., Weterings, K., McIntire, K.N., Hsu, Y.C., Lee, P.Y. et al. (1999) Anther developmental defects in Arabidopsis thaliana male-sterile mutants. Sex. Plant Reprod 11: 297-322. (Pubitemid 29087638)
40. Scott, R., Dagless, E., Hodge, R., Paul, W., Soufleri, I. and Draper, J. (1991) Patterns of gene expression in developing anthers of Brassica napus. Plant Mol. Biol. 17: 195-207.
41. Scott, R.J., Spielman, M. and Dickinson, H.G. (2004) Stamen structure and function. Plant Cell 16(Suppl): S46-S60. (Pubitemid 38774216)
42. Sorensen, A.M., Krober, S., Unte, U.S., Huijser, P., Dekker, K. and Saedler, H. (2003) The Arabidopsis ABORTED MICROSPORES (AMS) gene encodes a MYC class transcription factor. Plant J. 33: 413-423. (Pubitemid 36174894)
43. Toppino, L., Kooiker, M., Lindner, M., Dreni, L., Rotino, G.L. and Kater, M.M. (2010) Reversible male sterility in eggplant (Solanum melongena L.) by artificial microRNA-mediated silencing of general transcription factor genes. Plant Biotechnol. J. 9: 684-692.
44. Tsuchiya, T., Toriyama, K., Ejiri, S. and Hinata, K. (1994) Molecular characterization of rice genes specifically expressed in the anther tapetum. Plant Mol. Biol. 26: 1737-1746.
45. Wang, Z., Liang, Y., Li, C., Xu, Y., Lan, L., Zhao, D. et al. (2005) Microarray analysis of gene expression involved in anther development in rice (Oryza sativa L.). Plant Mol. Biol. 58: 721-737. (Pubitemid 41297950)
46. Wang, Z., Gerstein, M. and Snyder, M. (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10: 57-63.
47. Wijeratne, A.J., Zhang, W., Sun, Y., Liu, W., Albert, R., Zheng, Z. et al. (2007) Differential gene expression in Arabidopsis wild-type and mutant anthers: insights into anther cell differentiation and regulatory networks. Plant J. 52: 14-29. (Pubitemid 47476165)
48. Wilson, Z.A. and Zhang, D.B. (2009) From Arabidopsis to rice: pathways in pollen development. J. Exp. Bot. 60: 1479-1492.
49. Wu, H.M. and Cheun, A.Y. (2000) Programmed cell death in plant reproduction. Plant Mol. Biol. 44: 267-281.
50. Wu, M.F., Tian, Q. and Reed, J.W. (2006) Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction. Development 133: 4211-4218. (Pubitemid 44830665)
51. Yang, C., Vizcay-Barrena, G., Conner, K. and Wilson, Z.A. (2007) MALE STERILITY1 is required for tapetal development and pollen wall biosynthesis. Plant Cell 19: 3530-3548.
52. Yang, S.L., Xie, L.F., Mao, H.Z., Puah, C.S., Yang, W.C., Jiang, L. et al. (2003) Tapetum determinant1 is required for cell specialization in the Arabidopsis anther. Plant Cell 15: 2792-2804. (Pubitemid 37546251)
53. Zhang, W., Sun, Y., Timofejeva, L., Chen, C., Grossniklaus, U. and Ma, H. (2006) Regulation of Arabidopsis tapetum development and function by DYSFUNCTIONAL TAPETUM1 (DYT1) encoding a putative bHLH transcription factor. Development 133: 3085-3095. (Pubitemid 44404332)
54. Zhao, D.Z., Wang, G.F., Speal, B. and Ma, H. (2002) The excess micro-sporocytes1 gene encodes a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in the Arabidopsis anther. Genes Dev. 16: 2021-2031. (Pubitemid 34832928)