Observation of intermolecular interactions in large protein complexes by 2D-double difference nuclear overhauser enhancement spectroscopy: Application to the 44 KDa interferon-receptor complex

Journal of the American Chemical Society

Volumn 133, Issue 37, 2011, Pages 14755-14764

  Nudelman, Ilona ^a,b   Akabayov, Sabine R ^a,c   Scherf, Tali ^a   Anglister, Jacob ^a  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

^b ROCKEFELLER UNIVERSITY   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE DIFFERENCES; ENHANCED T; EXCHANGEABLE PROTONS; HOMONUCLEAR; INTERMOLECULAR INTERACTIONS; NUCLEAR OVERHAUSER ENHANCEMENT; PROTEIN COMPLEXES; SIGNAL TO NOISE;

ANTIBIOTICS; GLYCOPROTEINS; ISOTOPES; NUCLEAR MAGNETIC RESONANCE; PROTEINS; PROTONS;

SIGNAL TO NOISE RATIO;

ALPHA INTERFERON RECEPTOR; ALPHA2 INTERFERON; BIOPOLYMER; PROTON;

ARTICLE; CHEMICAL STRUCTURE; COMPLEX FORMATION; HETERONUCLEAR NUCLEAR MAGNETIC RESONANCE; MOLECULAR DOCKING; MOLECULAR INTERACTION; MOLECULAR MODEL; SIGNAL NOISE RATIO; STRUCTURE ANALYSIS;

HUMANS; INTERFERON-ALPHA; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN BINDING; PROTEIN INTERACTION MAPPING; RECEPTOR, INTERFERON ALPHA-BETA;

EID: 80052818563     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja205480v     Document Type: Article

References (40)

1. Xu, Y.; Zheng, Y.; Fan, J. S.; Yang, D. Nat. Methods 2006, 3, 931-937
2. Tugarinov, V.; Choy, W.-Y.; Orekhov, V. Y.; Kay, L. E. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 622-627
3. Otting, G.; Wüthrich, K. Q. Rev. Biophys. 1990, 23, 39-96
4. Otting, G.; Wüthrich, K. J. Magn. Reson. 1988, 76, 569-574
5. Ikura, M.; Bax, A. J. Am. Chem. Soc. 1992, 114, 2433-2440
6. Kogler, H.; Sörensen, O. W.; Bodenhausen, G.; Ernst, R. R. J. Magn. Reson. 1983, 55, 157-163
7. Breeze, A. L. Prog. Nucl. Magn. Reson. Spectrosc. 2000, 36, 323-372
8. Gross, J. D.; Moerke, N. J.; von der Haar, T.; Lugovskoy, A. A.; Sachs, A. B.; McCarthy, J. E.; Wagner, G. Cell 2003, 115, 739-750
9. Gross, J. D.; Gelev, V. M.; Wagner, G. J. Biomol. NMR 2003, 25, 235-242
10. Koglin, A.; Lohr, F.; Bernhard, F.; Rogov, V. V.; Frueh, D. P.; Strieter, E. R.; Mofid, M. R.; Guntert, P.; Wagner, G.; Walsh, C. T.; Marahiel, M. A.; Dötsch, V. Nature 2008, 454, 907-U968
11. Takeuchi, K.; Roehrl, M. H. A.; Sun, Z. Y. J.; Wagner, G. Structure 2007, 15, 587-597
12. Nudelman, I.; Akabayov, S. R.; Schnur, E.; Biron, Z.; Levy, R.; Xu, Y.; Yang, D.; Anglister, J. Biochemistry 2010, 49, 5117-5133
13. Fesik, S. W.; Zuiderweg, E. R. P. J. Am. Chem. Soc. 1989, 111, 5013-5015
14. Zvi, A.; Feigelson, D. J.; Hayek, Y.; Anglister, J. Biochemistry 1997, 36, 8619-8627
15. Zvi, A.; Kustanovich, I.; Hayek, Y.; Matsushita, S.; Anglister, J. FEBS Lett. 1995, 368, 267-270
16. Zvi, A.; Tugarinov, V.; Faiman, G. A.; Horovitz, A.; Anglister, J. Eur. J. Biochem. 2000, 267, 767-779
17. Chill, J. H.; Nivasch, R.; Levy, R.; Albeck, S.; Schreiber, G.; Anglister, J. Biochemistry 2002, 41, 3575-3585
18. Piehler, J.; Schreiber, G. J. Mol. Biol. 1999, 289, 57-67
19. Quadt-Akabayov, S. R.; Chill, J. H.; Levy, R.; Kessler, N.; Anglister, J. Protein Sci. 2006, 15, 2656-2668
20. Gasteiger, E.; Hoogland, C.; Gattiker, A.; Duvaud, S. e.; Wilkins, M. R.; Appel, R. D.; Bairoch, A. Protein Identification and Analysis Tools on the ExPASy Server; 2005; pp 571-607.
21. Delaglio, F.; Grzesiek, S.; Vuister, G. W.; Zhu, G.; Pfeifer, J.; Bax, A. J. Biomol. NMR 1995, 6, 277-293
22. Johnson, B. A.; Blevins, R. A. J. Biomol. NMR 1994, 4, 603-614
23. Bax, A.; Ikura, M.; Kay, L. E.; Zhu, G. J. Magn. Reson. 1991, 91, 174-178
24. Dominguez, C.; Boelens, R.; Bonvin, A. M. J. J. J. Am. Chem. Soc. 2003, 125, 1731-1737
25. Brunger, A. T. Nat. Protoc. 2007, 2, 2728-2733
26. Brunger, A. T.; Adams, P. D.; Clore, G. M.; DeLano, W. L.; Gros, P.; Grosse-Kunstleve, R. W.; Jiang, J. S.; Kuszewski, J.; Nilges, M.; Pannu, N. S.; Read, R. J.; Rice, L. M.; Simonson, T.; Warren, G. L. Acta Crystallogr., Sect. D: Biol. Crystallogr. 1998, 54, 905-921
27. Chill, J. H.; Quadt, S. R.; Levy, R.; Schreiber, G.; Anglister, J. Structure 2003, 11, 791-802
28. Roisman, L. C.; Piehler, J.; Trosset, J. Y.; Scheraga, H. A.; Schreiber, G. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 13231-13236
29. Klaus, W.; Gsell, B.; Labhardt, A. M.; Wipf, B.; Senn, H. J. Mol. Biol. 1997, 274, 661-675
30. Hubbard, S. J.; Eisenmenger, F.; Thornton, J. M. Protein Sci. 1994, 3, 757-768
31. Hubbard, S. J.; Thornton, J. M.; Campbell, S. F. Faraday Discuss. 1992, 93, 13-23
32. Krissinel, E.; Henrick, K. J. Mol. Biol. 2007, 372, 774-797
33. Koradi, R.; Billeter, M.; Wüthrich, K. J. Mol. Graphics 1996, 14, 51-55, 29-32.
34. Bhattacharya, A.; Tejero, R.; Montelione, G. T. Proteins 2007, 66, 778-795
35. DeLano, W. L. Curr. Opin. Struct. Biol. 2002, 12, 14-20
36. Meadows, D. H.; Jardetzky, O.; Epand, R. M.; Ruterjans, H. H.; Scheraga, H. A. Proc. Natl. Acad. Sci. U.S.A. 1968, 60, 766-772
37. de Vries, S. J.; van Dijk, M.; Bonvin, A. M. Nat. Protoc. 2010, 5, 883-897
38. Xu, Y.; Lin, Z.; Ho, C.; Yang, D. J. Am. Chem. Soc. 2005, 127, 11920-11921
39. Yang, D.; Zheng, Y.; Liu, D.; Wyss, D. F. J. Am. Chem. Soc. 2004, 126, 3710-3711
40. Zheng, Y.; Giovannelli, J. L.; Ho, N. T.; Ho, C.; Yang, D. J. Biomol. NMR 2004, 30, 423-429