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Volumn 111, Issue 4, 2011, Pages 800-810

Alkane-degrading properties of Dietzia sp. H0B, a key player in the Prestige oil spill biodegradation (NW Spain)

Author keywords

Alkane degradation; AlkB; Constitutive expression; CYP153; Dietzia; Oil spill; Prestige

Indexed keywords

BIODEGRADATION; GENE EXPRESSION; OIL SPILLS;

EID: 80052801944     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2011.05104.x     Document Type: Article
Times cited : (45)

References (57)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: selection of best-fit models of protein evolution
    • Abascal, F., Zardoya, R. and Posada, D. (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21, 2104-2105.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 2
    • 47949088400 scopus 로고    scopus 로고
    • Alcanivorax strain detected among the cultured bacterial community from sediments affected by the 'Prestige' oil spill
    • Alonso-Gutierrez, J., Costa, M.M., Figueras, A., Albaiges, J., Vinas, M., Solanas, A.M. and Novoa, B. (2008) Alcanivorax strain detected among the cultured bacterial community from sediments affected by the 'Prestige' oil spill. Mar Ecol Prog Ser 362, 25-36.
    • (2008) Mar Ecol Prog Ser , vol.362 , pp. 25-36
    • Alonso-Gutierrez, J.1    Costa, M.M.2    Figueras, A.3    Albaiges, J.4    Vinas, M.5    Solanas, A.M.6    Novoa, B.7
  • 3
    • 66249134249 scopus 로고    scopus 로고
    • Bacterial communities from shoreline environments (costa da morte, northwestern Spain) affected by the prestige oil spill
    • Alonso-Gutierrez, J., Figueras, A., Albaiges, J., Jimenez, N., Vinas, M., Solanas, A.M. and Novoa, B. (2009) Bacterial communities from shoreline environments (costa da morte, northwestern Spain) affected by the prestige oil spill. Appl Environ Microbiol 75, 3407-3418.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 3407-3418
    • Alonso-Gutierrez, J.1    Figueras, A.2    Albaiges, J.3    Jimenez, N.4    Vinas, M.5    Solanas, A.M.6    Novoa, B.7
  • 5
    • 20444375861 scopus 로고    scopus 로고
    • Expanding the alkane oxygenase toolbox: new enzymes and applications
    • van Beilen, J.B. and Funhoff, E.G. (2005) Expanding the alkane oxygenase toolbox: new enzymes and applications. Curr Opin Biotechnol 16, 308-314.
    • (2005) Curr Opin Biotechnol , vol.16 , pp. 308-314
    • van Beilen, J.B.1    Funhoff, E.G.2
  • 6
    • 33846621913 scopus 로고    scopus 로고
    • Alkane hydroxylases involved in microbial alkane degradation
    • van Beilen, J.B. and Funhoff, E.G. (2007) Alkane hydroxylases involved in microbial alkane degradation. Appl Microbiol Biotechnol 74, 13-21.
    • (2007) Appl Microbiol Biotechnol , vol.74 , pp. 13-21
    • van Beilen, J.B.1    Funhoff, E.G.2
  • 7
    • 0026801560 scopus 로고
    • Topology of the membrane-bound alkane hydroxylase of Pseudomonas oleovorans
    • van Beilen, J.B., Penninga, D. and Witholt, B. (1992) Topology of the membrane-bound alkane hydroxylase of Pseudomonas oleovorans. J Biol Chem 267, 9194-9201.
    • (1992) J Biol Chem , vol.267 , pp. 9194-9201
    • van Beilen, J.B.1    Penninga, D.2    Witholt, B.3
  • 8
    • 0034969905 scopus 로고    scopus 로고
    • Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes
    • van Beilen, J.B., Panke, S., Lucchini, S., Franchini, A.G., Rothlisberger, M. and Witholt, B. (2001) Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes. Microbiology 147, 1621-1630.
    • (2001) Microbiology , vol.147 , pp. 1621-1630
    • van Beilen, J.B.1    Panke, S.2    Lucchini, S.3    Franchini, A.G.4    Rothlisberger, M.5    Witholt, B.6
  • 10
    • 17444405636 scopus 로고    scopus 로고
    • Biocatalytic production of perillyl alcohol from limonene by using a novel Mycobacterium sp. cytochrome P450 alkane hydroxylase expressed in Pseudomonas putida
    • van Beilen, J.B., Holtackers, R., Luscher, D., Bauer, U., Witholt, B. and Duetz, W.A. (2005) Biocatalytic production of perillyl alcohol from limonene by using a novel Mycobacterium sp. cytochrome P450 alkane hydroxylase expressed in Pseudomonas putida. Appl Environ Microbiol 71, 1737-1744.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1737-1744
    • van Beilen, J.B.1    Holtackers, R.2    Luscher, D.3    Bauer, U.4    Witholt, B.5    Duetz, W.A.6
  • 11
    • 33644853465 scopus 로고    scopus 로고
    • Cytochrome P450 alkane hydroxylases of the CYP153 family are common in alkane-degrading eubacteria lacking integral membrane alkane hydroxylases
    • van Beilen, J.B., Funhoff, E.G., van Loon, A., Just, A., Kaysser, L., Bouza, M., Holtackers, R., Rothlisberger, M. et al. (2006) Cytochrome P450 alkane hydroxylases of the CYP153 family are common in alkane-degrading eubacteria lacking integral membrane alkane hydroxylases. Appl Environ Microbiol 72, 59-65.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 59-65
    • van Beilen, J.B.1    Funhoff, E.G.2    van Loon, A.3    Just, A.4    Kaysser, L.5    Bouza, M.6    Holtackers, R.7    Rothlisberger, M.8
  • 13
    • 67650732338 scopus 로고    scopus 로고
    • Fast biodegradation of long chain n-alkanes and crude oil at high concentrations with Rhodococcus sp Moj-3449
    • Binazadeh, M., Karimi, I.A. and Li, Z. (2009) Fast biodegradation of long chain n-alkanes and crude oil at high concentrations with Rhodococcus sp Moj-3449. Enzyme Microb Technol 45, 195-202.
    • (2009) Enzyme Microb Technol , vol.45 , pp. 195-202
    • Binazadeh, M.1    Karimi, I.A.2    Li, Z.3
  • 14
    • 0036000361 scopus 로고    scopus 로고
    • Hydrophobicity development, alkane oxidation, and crude-oil emulsification in a Rhodococcus species
    • Bredholt, H., Bruheim, P., Potocky, M. and Eimhjellen, K. (2002) Hydrophobicity development, alkane oxidation, and crude-oil emulsification in a Rhodococcus species. Can J Microbiol 48, 295-304.
    • (2002) Can J Microbiol , vol.48 , pp. 295-304
    • Bredholt, H.1    Bruheim, P.2    Potocky, M.3    Eimhjellen, K.4
  • 16
    • 34249070268 scopus 로고    scopus 로고
    • The key role of the mycolic acid content in the functionality of the cell wall permeability barrier in Corynebacterineae
    • Gebhardt, H., Meniche, X., Tropis, M., Kramer, R., Daffe, M. and Morbach, S. (2007) The key role of the mycolic acid content in the functionality of the cell wall permeability barrier in Corynebacterineae. Microbiology 153, 1424-1434.
    • (2007) Microbiology , vol.153 , pp. 1424-1434
    • Gebhardt, H.1    Meniche, X.2    Tropis, M.3    Kramer, R.4    Daffe, M.5    Morbach, S.6
  • 17
    • 0242578620 scopus 로고    scopus 로고
    • PHYML-A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S. and Gascuel, O. (2003) PHYML-A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 18
    • 0035491590 scopus 로고    scopus 로고
    • Physical and metabolic interactions of Pseudomonas sp. strain JA5-B45 and Rhodococcus sp. strain F9-D79 during growth on crude oil and effect of a chemical surfactant on them
    • van Hamme, J.D. and Ward, O.P. (2001) Physical and metabolic interactions of Pseudomonas sp. strain JA5-B45 and Rhodococcus sp. strain F9-D79 during growth on crude oil and effect of a chemical surfactant on them. Appl Environ Microbiol 67, 4874-4879.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4874-4879
    • van Hamme, J.D.1    Ward, O.P.2
  • 22
    • 2942511601 scopus 로고    scopus 로고
    • Microbial communities in oil-contaminated seawater
    • Harayama, S., Kasai, Y. and Hara, A. (2004) Microbial communities in oil-contaminated seawater. Curr Opin Biotechnol 15, 205-214.
    • (2004) Curr Opin Biotechnol , vol.15 , pp. 205-214
    • Harayama, S.1    Kasai, Y.2    Hara, A.3
  • 23
    • 28444466634 scopus 로고    scopus 로고
    • Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive PCR
    • Heiss-Blanquet, S., Benoit, Y., Marechaux, C. and Monot, F. (2005) Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive PCR. J Appl Microbiol 99, 1392-1403.
    • (2005) J Appl Microbiol , vol.99 , pp. 1392-1403
    • Heiss-Blanquet, S.1    Benoit, Y.2    Marechaux, C.3    Monot, F.4
  • 24
    • 0036001072 scopus 로고    scopus 로고
    • Predominant growth of Alcanivorax strains in oil-contaminated and nutrient-supplemented sea water
    • Kasai, Y., Kishira, H., Sasaki, T., Syutsubo, K., Watanabe, K. and Harayama, S. (2002) Predominant growth of Alcanivorax strains in oil-contaminated and nutrient-supplemented sea water. Environ Microbiol 4, 141-147.
    • (2002) Environ Microbiol , vol.4 , pp. 141-147
    • Kasai, Y.1    Kishira, H.2    Sasaki, T.3    Syutsubo, K.4    Watanabe, K.5    Harayama, S.6
  • 25
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • Katoh, K. and Toh, H. (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9, 286-298.
    • (2008) Brief Bioinform , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 26
    • 33646545024 scopus 로고    scopus 로고
    • Population dynamics within a microbial consortium during growth on diesel fuel in saline environments
    • Kleinsteuber, S., Riis, V., Fetzer, I., Harms, H. and Muller, S. (2006) Population dynamics within a microbial consortium during growth on diesel fuel in saline environments. Appl Environ Microbiol 72, 3531-3542.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3531-3542
    • Kleinsteuber, S.1    Riis, V.2    Fetzer, I.3    Harms, H.4    Muller, S.5
  • 27
    • 33745942487 scopus 로고    scopus 로고
    • A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization
    • Kloos, K., Munch, J.C. and Schloter, M. (2006) A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization. J Microbiol Methods 66, 486-496.
    • (2006) J Microbiol Methods , vol.66 , pp. 486-496
    • Kloos, K.1    Munch, J.C.2    Schloter, M.3
  • 29
    • 20444371027 scopus 로고    scopus 로고
    • Biodegradation and Rhodococcus- masters of catabolic versatility
    • Larkin, M.J., Kulakov, L.A. and Allen, C.C. (2005) Biodegradation and Rhodococcus- masters of catabolic versatility. Curr Opin Biotechnol 16, 282-290.
    • (2005) Curr Opin Biotechnol , vol.16 , pp. 282-290
    • Larkin, M.J.1    Kulakov, L.A.2    Allen, C.C.3
  • 30
    • 33645120633 scopus 로고    scopus 로고
    • Enhanced biodegradation of diesel oil by a newly identified Rhodococcus baikonurensis EN3 in the presence of mycolic acid
    • Lee, M., Kim, M.K., Singleton, I., Goodfellow, M. and Lee, S.T. (2006) Enhanced biodegradation of diesel oil by a newly identified Rhodococcus baikonurensis EN3 in the presence of mycolic acid. J Appl Microbiol 100, 325-333.
    • (2006) J Appl Microbiol , vol.100 , pp. 325-333
    • Lee, M.1    Kim, M.K.2    Singleton, I.3    Goodfellow, M.4    Lee, S.T.5
  • 32
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak, K.J. and Schmittgen, T.D. (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25, 402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 36
    • 0038317584 scopus 로고    scopus 로고
    • Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine Alpine soils
    • Margesin, R., Labbe, D., Schinner, F., Greer, C.W. and Whyte, L.G. (2003) Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine Alpine soils. Appl Environ Microbiol 69, 3085-3092.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3085-3092
    • Margesin, R.1    Labbe, D.2    Schinner, F.3    Greer, C.W.4    Whyte, L.G.5
  • 37
    • 0038304116 scopus 로고    scopus 로고
    • Differential expression of the components of the two alkane hydroxylases from Pseudomonas aeruginosa
    • Marin, M.M., Yuste, L. and Rojo, F. (2003) Differential expression of the components of the two alkane hydroxylases from Pseudomonas aeruginosa. J Bacteriol 185, 3232-3237.
    • (2003) J Bacteriol , vol.185 , pp. 3232-3237
    • Marin, M.M.1    Yuste, L.2    Rojo, F.3
  • 39
    • 0030203863 scopus 로고    scopus 로고
    • Tree View: an application to display phylogenetic trees on personal computers
    • Page, R. (1996) Tree View: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.1
  • 40
    • 56049107870 scopus 로고    scopus 로고
    • [Comparison of efficiencies of oil-oxidizing Dietzia maris strain and stimulation of natural microbial communities in remediation of polluted soil]
    • Pleshakova, E.V., Dubrovskaia, E.V. and Turkovskaia, O.V. (2008) [Comparison of efficiencies of oil-oxidizing Dietzia maris strain and stimulation of natural microbial communities in remediation of polluted soil]. Prikl Biokhim Mikrobiol 44, 430-437.
    • (2008) Prikl Biokhim Mikrobiol , vol.44 , pp. 430-437
    • Pleshakova, E.V.1    Dubrovskaia, E.V.2    Turkovskaia, O.V.3
  • 41
    • 76949087936 scopus 로고    scopus 로고
    • Nodavirus infection of sea bass (Dicentrarchus labrax) induces up-regulation of galectin-1 expression with potential anti-inflammatory activity
    • Poisa-Beiro, L., Dios, S., Ahmed, H., Vasta, G.R., Martinez-Lopez, A., Estepa, A., Alonso-Gutierrez, J., Figueras, A. et al. (2009) Nodavirus infection of sea bass (Dicentrarchus labrax) induces up-regulation of galectin-1 expression with potential anti-inflammatory activity. J Immunol 183, 6600-6611.
    • (2009) J Immunol , vol.183 , pp. 6600-6611
    • Poisa-Beiro, L.1    Dios, S.2    Ahmed, H.3    Vasta, G.R.4    Martinez-Lopez, A.5    Estepa, A.6    Alonso-Gutierrez, J.7    Figueras, A.8
  • 43
    • 37249055491 scopus 로고    scopus 로고
    • Isolation of Gram-positive n-alkane degraders from a hydrocarbon-contaminated Mediterranean shoreline
    • Quatrini, P., Scaglione, G., De Pasquale, C., Riela, S. and Puglia, A.M. (2008) Isolation of Gram-positive n-alkane degraders from a hydrocarbon-contaminated Mediterranean shoreline. J Appl Microbiol 104, 251-259.
    • (2008) J Appl Microbiol , vol.104 , pp. 251-259
    • Quatrini, P.1    Scaglione, G.2    De Pasquale, C.3    Riela, S.4    Puglia, A.M.5
  • 44
    • 77956879784 scopus 로고    scopus 로고
    • Identities of epilithic hydrocarbon-utilizing diazotrophic bacteria from the Arabian Gulf Coasts, and their potential for oil bioremediation without nitrogen supplementation
    • Radwan, S., Mahmoud, H., Khanafer, M., Al-Habib, A. and Al-Hasan, R. (2010) Identities of epilithic hydrocarbon-utilizing diazotrophic bacteria from the Arabian Gulf Coasts, and their potential for oil bioremediation without nitrogen supplementation. Microb Ecol 60, 354-363.
    • (2010) Microb Ecol , vol.60 , pp. 354-363
    • Radwan, S.1    Mahmoud, H.2    Khanafer, M.3    Al-Habib, A.4    Al-Hasan, R.5
  • 45
    • 0036840898 scopus 로고    scopus 로고
    • Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation
    • Roling, W.F.M., Milner, M.G., Jones, D.M., Lee, K., Daniel, F., Swannell, R.J.P. and Head, I.M. (2002) Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation. Appl Environ Microbiol 68, 5537-5548.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5537-5548
    • Roling, W.F.M.1    Milner, M.G.2    Jones, D.M.3    Lee, K.4    Daniel, F.5    Swannell, R.J.P.6    Head, I.M.7
  • 46
    • 2442643152 scopus 로고    scopus 로고
    • Bacterial community dynamics and hydrocarbon degradation during a field-scale evaluation of bioremediation on a mudflat beach contaminated with buried oil
    • Roling, W.F.M., Milner, M.G., Jones, D.M., Fratepietro, F., Swannell, R.P.J., Daniel, F. and Head, I.M. (2004) Bacterial community dynamics and hydrocarbon degradation during a field-scale evaluation of bioremediation on a mudflat beach contaminated with buried oil. Appl Environ Microbiol 70, 2603-2613.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2603-2613
    • Roling, W.F.M.1    Milner, M.G.2    Jones, D.M.3    Fratepietro, F.4    Swannell, R.P.J.5    Daniel, F.6    Head, I.M.7
  • 47
    • 33744762185 scopus 로고    scopus 로고
    • Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization
    • Sabirova, J.S., Ferrer, M., Regenhardt, D., Timmis, K.N. and Golyshin, P.N. (2006) Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization. J Bacteriol 188, 3763-3773.
    • (2006) J Bacteriol , vol.188 , pp. 3763-3773
    • Sabirova, J.S.1    Ferrer, M.2    Regenhardt, D.3    Timmis, K.N.4    Golyshin, P.N.5
  • 48
  • 50
    • 0029973076 scopus 로고    scopus 로고
    • Field evaluations of marine oil spill bioremediation
    • Swannell, R.P.J., Lee, K. and McDonagh, M. (1996) Field evaluations of marine oil spill bioremediation. Microbiol Rev 60, 342-365.
    • (1996) Microbiol Rev , vol.60 , pp. 342-365
    • Swannell, R.P.J.1    Lee, K.2    McDonagh, M.3
  • 52
    • 79951593869 scopus 로고    scopus 로고
    • Potential for petroleum aliphatic hydrocarbon degradation of the key bacteria in temperate seas
    • In Chapter 5 ed. Nemeth, A.D. pp. - Hauppauge, NY: Nova Science Publishers. In press.
    • Teramoto, M. and Harayama, S. (2011) Potential for petroleum aliphatic hydrocarbon degradation of the key bacteria in temperate seas. In The Marine Environment: Ecology, Management and Conservation. Chapter 5 ed. Nemeth, A.D. pp. 157-166. Hauppauge, NY: Nova Science Publishers. In press.
    • (2011) The Marine Environment: Ecology, Management and Conservation , pp. 157-166
    • Teramoto, M.1    Harayama, S.2
  • 53
    • 71049168351 scopus 로고    scopus 로고
    • Oceanobacter-related bacteria are important for the degradation of petroleum aliphatic hydrocarbons in the tropical marine environment
    • Teramoto, M., Suzuki, M., Okazaki, F., Hatmanti, A. and Harayama, S. (2009) Oceanobacter-related bacteria are important for the degradation of petroleum aliphatic hydrocarbons in the tropical marine environment. Microbiology 155, 3362-3370.
    • (2009) Microbiology , vol.155 , pp. 3362-3370
    • Teramoto, M.1    Suzuki, M.2    Okazaki, F.3    Hatmanti, A.4    Harayama, S.5
  • 54
    • 0038261929 scopus 로고    scopus 로고
    • Biodegradation of crude oil contaminating marine shorelines and freshwater wetlands
    • Venosa, A.D. and Zhu, X.Q. (2003) Biodegradation of crude oil contaminating marine shorelines and freshwater wetlands. Spill Sci Technol Bull 8, 163-178.
    • (2003) Spill Sci Technol Bull , vol.8 , pp. 163-178
    • Venosa, A.D.1    Zhu, X.Q.2
  • 55
    • 34248375262 scopus 로고    scopus 로고
    • Identification and biodegradation potential of a novel strain of Dietzia cinnamea isolated from a petroleum-contaminated tropical soil
    • von der Weid, I., Marques, J.M., Cunha, C.D., Lippi, R.K., dos Santos, S.C.C., Rosado, A.S., Lins, U. and Seldin, L. (2006) Identification and biodegradation potential of a novel strain of Dietzia cinnamea isolated from a petroleum-contaminated tropical soil. Syst Appl Microbiol 30, 331-339.
    • (2006) Syst Appl Microbiol , vol.30 , pp. 331-339
    • von der Weid, I.1    Marques, J.M.2    Cunha, C.D.3    Lippi, R.K.4    dos Santos, S.C.C.5    Rosado, A.S.6    Lins, U.7    Seldin, L.8
  • 57
    • 0031691310 scopus 로고    scopus 로고
    • Carbon-source-dependent expression of the PalkB promoter from the Pseudomonas oleovorans alkane degradation pathway
    • Yuste, L., Canosa, I. and Rojo, F. (1998) Carbon-source-dependent expression of the PalkB promoter from the Pseudomonas oleovorans alkane degradation pathway. J Bacteriol 180, 5218-5226.
    • (1998) J Bacteriol , vol.180 , pp. 5218-5226
    • Yuste, L.1    Canosa, I.2    Rojo, F.3


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