-
1
-
-
27944504371
-
Detection of malignancy in cytology specimens using spectral-spatial analysis
-
Angeletti C, Harvey NR, Khomitch V, Fischer AH, Levenson RM, Rimm DL. Detection of malignancy in cytology specimens using spectral-spatial analysis. Lab Invest 2005, 85:1555-1564.
-
(2005)
Lab Invest
, vol.85
, pp. 1555-1564
-
-
Angeletti, C.1
Harvey, N.R.2
Khomitch, V.3
Fischer, A.H.4
Levenson, R.M.5
Rimm, D.L.6
-
2
-
-
33749862379
-
Putting proteins on the map
-
Murphy RF. Putting proteins on the map. Nat Biotechnol 2006, 24:1223-1224.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1223-1224
-
-
Murphy, R.F.1
-
3
-
-
33749867157
-
Analyzing proteome topology and function by automated multidimensional fluorescence microscopy
-
doi:10.1038/nbt1250
-
Schubert W, Bonnekoh B, Pommer AJ, Philipsen L, B̈ockelmann R, Malykh Y, Gollnick H, Friedenberger M, Bode M, Dress AW. Analyzing proteome topology and function by automated multidimensional fluorescence microscopy. Nat Biotechnol 2006, 24:1270-1278. doi:10.1038/nbt1250.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1270-1278
-
-
Schubert, W.1
Bonnekoh, B.2
Pommer, A.J.3
Philipsen, L.4
B̈ockelmann, R.5
Malykh, Y.6
Gollnick, H.7
Friedenberger, M.8
Bode, M.9
Dress, A.W.10
-
4
-
-
34250892420
-
Array tomography: a new tool for imaging the molecular architecture and ultrastructure of neural circuits
-
Micheva KD, Smith SJ. Array tomography: a new tool for imaging the molecular architecture and ultrastructure of neural circuits. Neuron 2007, 55:25-36.
-
(2007)
Neuron
, vol.55
, pp. 25-36
-
-
Micheva, K.D.1
Smith, S.J.2
-
5
-
-
33845764296
-
A guided tour into subcellular colocalization analysis in light microscopy
-
doi:10.1111/j.1365-2818.2006.01706.x
-
Bolte S, Cordeli'eres FP. A guided tour into subcellular colocalization analysis in light microscopy. J Microsc 2006, 224:213-232. doi:10.1111/j.1365-2818.2006.01706.x.
-
(2006)
J Microsc
, vol.224
, pp. 213-232
-
-
Bolte, S.1
Cordeli'eres, F.P.2
-
6
-
-
34548317025
-
The potential of high-content high-throughput microscopy in drug discovery
-
doi:10.1038/sj.bjp.0707346
-
Starkuviene V, Pepperkok R. The potential of high-content high-throughput microscopy in drug discovery. Br J Pharmacol 2007, 152:62-71. doi:10.1038/sj.bjp.0707346.
-
(2007)
Br J Pharmacol
, vol.152
, pp. 62-71
-
-
Starkuviene, V.1
Pepperkok, R.2
-
7
-
-
0036264672
-
Information visualization and visual data mining
-
Keim DA. Information visualization and visual data mining. IEEE Trans Visualization Comput Graph 2002, 8:1-8.
-
(2002)
IEEE Trans Visualization Comput Graph
, vol.8
, pp. 1-8
-
-
Keim, D.A.1
-
9
-
-
33750955634
-
Pitas I. Morphological segmentation of histology cell images
-
Nedzved A, Ablameyko S, Pitas I. Morphological segmentation of histology cell images. ICPR 2000, 1:500-503.
-
(2000)
ICPR
, vol.1
, pp. 500-503
-
-
Nedzved, A.1
Ablameyko, S.2
-
10
-
-
1842372117
-
Applying watershed algorithms to the segmentation of clustered nuclei
-
Malpica N, de Soĺorzano CO, Vaquero JJ, Santos A, Vallcorba I, Garćia-Sagredo JM, del Pozo F. Applying watershed algorithms to the segmentation of clustered nuclei. Cytometry 1997, 28:289-297.
-
(1997)
Cytometry
, vol.28
, pp. 289-297
-
-
Malpica, N.1
de Soĺorzano, C.O.2
Vaquero, J.J.3
Santos, A.4
Vallcorba, I.5
Garćia-Sagredo, J.M.6
del Pozo, F.7
-
11
-
-
3042547731
-
Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections
-
Ẅahlby C, Sintorn IM, Erlandsson F, Borgefors C, Bengtssson E. Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections. J Microsc 2004, 215:67-76.
-
(2004)
J Microsc
, vol.215
, pp. 67-76
-
-
Ẅahlby, C.1
Sintorn, I.M.2
Erlandsson, F.3
Borgefors, C.4
Bengtssson, E.5
-
13
-
-
0035107394
-
Segmentation of nuclei and cells using membrane related protein markers
-
Solorzano COD, Malladi R, Leli'evre SA, Lockett SJ. Segmentation of nuclei and cells using membrane related protein markers. J Microsc 2000, 201:404-415.
-
(2000)
J Microsc
, vol.201
, pp. 404-415
-
-
Solorzano, C.O.D.1
Malladi, R.2
Leli'evre, S.A.3
Lockett, S.J.4
-
14
-
-
18744438529
-
Artificial neural network-aided image analysis system for cell counting
-
Sj̈ostr̈om PJ, Frydel BR, Wahlberg LU. Artificial neural network-aided image analysis system for cell counting. Cytometry 1999, 36:18-26.
-
(1999)
Cytometry
, vol.36
, pp. 18-26
-
-
Sj̈ostr̈om, P.J.1
Frydel, B.R.2
Wahlberg, L.U.3
-
15
-
-
0036825536
-
A neural network architecture for automatic segmentation of fluorescence micrographs
-
Nattkemper T, Wersing H, Ritter H, Schubert W. A neural network architecture for automatic segmentation of fluorescence micrographs. Neurocomputing 2002, 48:357-367.
-
(2002)
Neurocomputing
, vol.48
, pp. 357-367
-
-
Nattkemper, T.1
Wersing, H.2
Ritter, H.3
Schubert, W.4
-
16
-
-
11144259429
-
Automated counting of labelled cells in rodent brain section images
-
Theis F, Kohl Z, Kuhn H, Stockmeier H, Lang E. Automated counting of labelled cells in rodent brain section images. IASTED Int Conf Biomed Eng 2004, 209-212.
-
(2004)
IASTED Int Conf Biomed Eng
, pp. 209-212
-
-
Theis, F.1
Kohl, Z.2
Kuhn, H.3
Stockmeier, H.4
Lang, E.5
-
17
-
-
34547646206
-
An in situ probe for on-line monitoring of cell density and viability on the basis of dark field micfroscopy in conjunction with image processing and supervised machine learning
-
Wei DN, You J, Friehs K, Flaschel E, Nattkemper TW. An in situ probe for on-line monitoring of cell density and viability on the basis of dark field micfroscopy in conjunction with image processing and supervised machine learning. Biotechnol Bioeng 2007, 97:1489-500.
-
(2007)
Biotechnol Bioeng
, vol.97
, pp. 1489-1500
-
-
Wei, D.N.1
You, J.2
Friehs, K.3
Flaschel, E.4
Nattkemper, T.W.5
-
18
-
-
51049093776
-
Flexible synapse detection in fluorescence micrographs by modeling human expert grading
-
doi:10.1109/ ISBI.2008.4541254
-
Herold J, Friedenberger M, Bode M, Rajpoot N, Schubert W, Nattkemper TW. Flexible synapse detection in fluorescence micrographs by modeling human expert grading. Proceedings 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro ISBI 2008 2008, 1347-1350. doi:10.1109/ ISBI.2008.4541254.
-
(2008)
Proceedings 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro ISBI 2008
, pp. 1347-1350
-
-
Herold, J.1
Friedenberger, M.2
Bode, M.3
Rajpoot, N.4
Schubert, W.5
Nattkemper, T.W.6
-
19
-
-
71649091932
-
A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining
-
Herold J, Abouna S, Zhou L, Pelengaris S, Epstein DB, Khan M, Nattkemper TW. A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining. SPIE Med Imaging 2009.
-
(2009)
SPIE Med Imaging
-
-
Herold, J.1
Abouna, S.2
Zhou, L.3
Pelengaris, S.4
Epstein, D.B.5
Khan, M.6
Nattkemper, T.W.7
-
20
-
-
84873156861
-
Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications
-
In press
-
Herold J, Schubert W, Nattkemper TW. Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications. J Biotechnol. In press.
-
J Biotechnol
-
-
Herold, J.1
Schubert, W.2
Nattkemper, T.W.3
-
21
-
-
38349044046
-
Multiclass cell detection in bright field images of cell mixtures with ECOC probability estimation
-
doi:
-
Long X, ClevelandW, Yao Y. Multiclass cell detection in bright field images of cell mixtures with ECOC probability estimation. Image Vis Comput 2008, 26:578-591. doi:http//dx.doi.org/10.1016/j.imavis.2007.07.004.
-
(2008)
Image Vis Comput
, vol.26
, pp. 578-591
-
-
Long, X.1
Cleveland, W.2
Yao, Y.3
-
23
-
-
0024700849
-
Multiresolution feature extraction and selection for texture segmentation
-
Unser M, Eden M. Multiresolution feature extraction and selection for texture segmentation. IEEE Trans Pattern Anal Mach Intel 1989, 11:717-728.
-
(1989)
IEEE Trans Pattern Anal Mach Intel
, vol.11
, pp. 717-728
-
-
Unser, M.1
Eden, M.2
-
24
-
-
0037247155
-
A class of discrete multiresolution random elds and its application to image segmentation
-
Wilson R, Li CT. A class of discrete multiresolution random elds and its application to image segmentation. IEEE Trans Pattern Anal Mach Intel 2003, 25:42-56.
-
(2003)
IEEE Trans Pattern Anal Mach Intel
, vol.25
, pp. 42-56
-
-
Wilson, R.1
Li, C.T.2
-
25
-
-
33846216313
-
Volumetric texture segmentation by discriminant feature selection and multiresolution classication
-
Reyes-Aldasoro C, Bhalerao A. Volumetric texture segmentation by discriminant feature selection and multiresolution classication. IEEE Trans Med Imag 2007, 26:1-14.
-
(2007)
IEEE Trans Med Imag
, vol.26
, pp. 1-14
-
-
Reyes-Aldasoro, C.1
Bhalerao, A.2
-
26
-
-
74049153287
-
Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study
-
Purser A, Bergmann M, Lund̈alv T, Ontrup J, Nattkemper TW. Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study. Mar Ecol Prog Ser 2009, 397:241-251.
-
(2009)
Mar Ecol Prog Ser
, vol.397
, pp. 241-251
-
-
Purser, A.1
Bergmann, M.2
Lund̈alv, T.3
Ontrup, J.4
Nattkemper, T.W.5
-
27
-
-
36048961865
-
A method for linking computed image features to histological semantics in neuropathology
-
Lessmann B, Nattkemper T, Hans V, Degenhard A. A method for linking computed image features to histological semantics in neuropathology. J Biomed Inform-Special Issue: Intell Data Anal 2007, 40:631-641.
-
(2007)
J Biomed Inform-Special Issue: Intell Data Anal
, vol.40
, pp. 631-641
-
-
Lessmann, B.1
Nattkemper, T.2
Hans, V.3
Degenhard, A.4
-
28
-
-
33749141903
-
Spectral mapping tools from the earth sciences applied to spectral microscopy data
-
Harris AT. Spectral mapping tools from the earth sciences applied to spectral microscopy data. Cytometry A 2006, 69:872-879.
-
(2006)
Cytometry A
, vol.69
, pp. 872-879
-
-
Harris, A.T.1
-
29
-
-
34548821283
-
Utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery
-
doi:10.1186/1471-2121-8-S1-S8
-
Boucheron L, Bi Z, Harvey N, Manjunath BS, Rimm D. Utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery. BMC Cell Biol 2007, 8:S8. doi:10.1186/1471-2121-8-S1-S8.
-
(2007)
BMC Cell Biol
, vol.8
-
-
Boucheron, L.1
Bi, Z.2
Harvey, N.3
Manjunath, B.S.4
Rimm, D.5
-
30
-
-
33745951677
-
Spectral imaging perspective on cytomics
-
Levenson RM. Spectral imaging perspective on cytomics. Cytometry A 2006, 69:592-600.
-
(2006)
Cytometry A
, vol.69
, pp. 592-600
-
-
Levenson, R.M.1
-
31
-
-
33750067969
-
A method based on multispectral imaging technique for white blood cell segmentation
-
Guo N, Zeng L, Wu Q. A method based on multispectral imaging technique for white blood cell segmentation. Comput Biol Med 2006, 27:70-76.
-
(2006)
Comput Biol Med
, vol.27
, pp. 70-76
-
-
Guo, N.1
Zeng, L.2
Wu, Q.3
-
32
-
-
44849102214
-
Quantitative multicolor compositional imaging resolves molecular domains in cell-matrix adhesions
-
Zamir E, Geiger B, Kam Z. Quantitative multicolor compositional imaging resolves molecular domains in cell-matrix adhesions. PLoS ONE 2008, 3:e1901.
-
(2008)
PLoS ONE
, vol.3
-
-
Zamir, E.1
Geiger, B.2
Kam, Z.3
-
34
-
-
0000325341
-
On lines and planes of closest fit to a system of point in space
-
Pearson K. On lines and planes of closest fit to a system of point in space. Philos Mag 1901, 2:559-572.
-
(1901)
Philos Mag
, vol.2
, pp. 559-572
-
-
Pearson, K.1
-
35
-
-
58149421595
-
Analysis of a complex of statistical variables into principal components
-
Hotelling H. Analysis of a complex of statistical variables into principal components. J Educ Psychol 1933, 24:417-441.
-
(1933)
J Educ Psychol
, vol.24
, pp. 417-441
-
-
Hotelling, H.1
-
36
-
-
0003097075
-
Ü ber Lineare Methoden in der Wahrscheinlichkeitsrechnungna
-
Karhunen K. Ü ber Lineare Methoden in der Wahrscheinlichkeitsrechnungna. Ann Acad Scientiarum Fennicae 1946, 1:102-344.
-
(1946)
Ann Acad Scientiarum Fennicae
, vol.1
, pp. 102-344
-
-
Karhunen, K.1
-
37
-
-
0028416938
-
Independent component analysis-a new concept?
-
Comon P. Independent component analysis-a new concept? Signal Processing 1994, 36:287-314.
-
(1994)
Signal Processing
, vol.36
, pp. 287-314
-
-
Comon, P.1
-
38
-
-
77954386186
-
Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue
-
PMID: 19969439
-
Herold J, Herold L, Abouna S, Pelengaris S, Epstein D, Khan M, Nattkemper TW. Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue. Comput Med Imaging and Graph 2010, 34(6): 446-452 PMID: 19969439.
-
(2010)
Comput Med Imaging and Graph
, vol.34
, Issue.6
, pp. 446-452
-
-
Herold, J.1
Herold, L.2
Abouna, S.3
Pelengaris, S.4
Epstein, D.5
Khan, M.6
Nattkemper, T.W.7
-
44
-
-
0025568642
-
Parallel coordinates: a tool for visualizing multi-dimensional geometry
-
Los Alamitos, CA: IEEE Computer Society Press
-
Inselberg A, Dimsdale B. Parallel coordinates: a tool for visualizing multi-dimensional geometry. Proceedings of the 1st conference on Visualization 1990. Los Alamitos, CA: IEEE Computer Society Press, 1990, 361-378.
-
(1990)
Proceedings of the 1st conference on Visualization 1990
, pp. 361-378
-
-
Inselberg, A.1
Dimsdale, B.2
-
45
-
-
0023346285
-
ClevelandWS. Brushing scatterplots
-
doi:10.2307/1269768
-
Becker RA, ClevelandWS. Brushing scatterplots. Technometrics 1987, 29:127-142. doi:10.2307/1269768.
-
(1987)
Technometrics
, vol.29
, pp. 127-142
-
-
Becker, R.A.1
-
47
-
-
84949331034
-
The use of faces to represent points in kdimensional space graphically
-
Chernoff H. The use of faces to represent points in kdimensional space graphically. J Am Stat Assoc 1973, 68:361-368.
-
(1973)
J Am Stat Assoc
, vol.68
, pp. 361-368
-
-
Chernoff, H.1
-
48
-
-
84985110854
-
Color icons: merging color and texture perception for integrated visualization of multiple parameters
-
Levkovitz H. Color icons: merging color and texture perception for integrated visualization of multiple parameters. Proc Visualization 1991, 164-170.
-
(1991)
Proc Visualization
, pp. 164-170
-
-
Levkovitz, H.1
-
51
-
-
1542271672
-
Look and listen: sonification and visualization of multiparameter micrographs
-
IEEE EMBS, Cancun, Mexico
-
Nattkemper T, Hermann T, Schubert W, Ritter H. Look and listen: sonification and visualization of multiparameter micrographs. Proceedings of 25th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE EMBS, Cancun, Mexico, 2003.
-
(2003)
Proceedings of 25th Annual International Conference of the IEEE Engineering in Medicine and Biology Society
-
-
Nattkemper, T.1
Hermann, T.2
Schubert, W.3
Ritter, H.4
-
53
-
-
33244489131
-
The Bhattacharyya space for feature selection and its application to texture segmentation
-
Reyes-Aldasoro CC, Bhalerao A. The Bhattacharyya space for feature selection and its application to texture segmentation. Pattern Recognit 2006, 39:812-26.
-
(2006)
Pattern Recognit
, vol.39
, pp. 812-826
-
-
Reyes-Aldasoro, C.C.1
Bhalerao, A.2
-
54
-
-
0003385152
-
Oriented texture slivers: a technique for local value estimation of multiple scalar fileds
-
Weigle C, Emigh WG, Liu G, Taylor RM, Enns JT, Healey, CG. Oriented texture slivers: a technique for local value estimation of multiple scalar fileds. Proc Graph Interface 2000, 163-170.
-
(2000)
Proc Graph Interface
, pp. 163-170
-
-
Weigle, C.1
Emigh, W.G.2
Liu, G.3
Taylor, R.M.4
Enns, J.T.5
Healey, C.G.6
-
55
-
-
0029725135
-
The eyes have it: a task by data type taxonomy for information visualizations
-
Schneiderman B. The eyes have it: a task by data type taxonomy for information visualizations. IEEE Symp Vis Languages 1996, 336-343.
-
(1996)
IEEE Symp Vis Languages
, pp. 336-343
-
-
Schneiderman, B.1
-
57
-
-
38349081296
-
Visualization of high-dimensional biomedical image data
-
Serocka P. Visualization of high-dimensional biomedical image data. PCM 2007, 475-482.
-
(2007)
PCM
, pp. 475-482
-
-
Serocka, P.1
-
58
-
-
84887006810
-
A nonlinear mapping for data structure analysis
-
doi:
-
Sammon JW. A nonlinear mapping for data structure analysis. IEEE Trans Comput 1969, 18:401-409. doi:http://dx.doi.org/10.1109/T-C.1969.222678.
-
(1969)
IEEE Trans Comput
, vol.18
, pp. 401-409
-
-
Sammon, J.W.1
-
59
-
-
0020068152
-
Self-organized formation of topologically correct feature maps
-
Kohonen T. Self-organized formation of topologically correct feature maps. Biol Cybern 1982, 43:59-69.
-
(1982)
Biol Cybern
, vol.43
, pp. 59-69
-
-
Kohonen, T.1
-
60
-
-
84996166753
-
Image fusion based on topographic mappings using the hyperbolic space
-
doi:
-
Saalbach A, Ontrup J, Ritter H, Nattkemper TW. Image fusion based on topographic mappings using the hyperbolic space. Inf Visualization 2005, 4:266-275. doi:http://dx.doi.org/10.1057/palgrave.ivs.9500106.
-
(2005)
Inf Visualization
, vol.4
, pp. 266-275
-
-
Saalbach, A.1
Ontrup, J.2
Ritter, H.3
Nattkemper, T.W.4
-
61
-
-
0036779314
-
Conceptual and mathematical relationships among methods for spatial analysis
-
Dale MRT, Dixon P, Fortin MJ, Legendre P, EMyers D, et al. Citron-Pousty S. Conceptual and mathematical relationships among methods for spatial analysis. Ecography 2002, 25:558-577.
-
(2002)
Ecography
, vol.25
, pp. 558-577
-
-
Dale, M.R.T.1
Dixon, P.2
Fortin, M.J.3
Legendre, P.4
Emyers, D.5
Citron-Pousty, S.6
-
62
-
-
0036779386
-
Illustrations and guidelines for selecting statistical methods for quantifying spatial pattern in ecological data
-
Perry JN, Liebhold AM, Rosenberg MS, Dungan J, Miriti M, Jakomulska A. Illustrations and guidelines for selecting statistical methods for quantifying spatial pattern in ecological data. Ecography 2002, 25:5.
-
(2002)
Ecography
, vol.25
, pp. 5
-
-
Perry, J.N.1
Liebhold, A.M.2
Rosenberg, M.S.3
Dungan, J.4
Miriti, M.5
Jakomulska, A.6
-
63
-
-
2342460366
-
Wavelet analysis for detecting anisotropy in point patterns
-
Rosenberg MS. Wavelet analysis for detecting anisotropy in point patterns. J Vegetation Sci 2004, 15:2.
-
(2004)
J Vegetation Sci
, vol.15
, pp. 2
-
-
Rosenberg, M.S.1
-
64
-
-
67650841571
-
Statistical analysis of labelling patterns of mammary carcinoma cell nuclei on histological sections
-
Mattfeldt T, Eckel S, Fleischer F, Schmidt V. Statistical analysis of labelling patterns of mammary carcinoma cell nuclei on histological sections. J Microsc 2009, 235:106-118.
-
(2009)
J Microsc
, vol.235
, pp. 106-118
-
-
Mattfeldt, T.1
Eckel, S.2
Fleischer, F.3
Schmidt, V.4
-
65
-
-
36749015896
-
Analysis of spatial point patterns in microscopic and macroscopic biological image data
-
New York: Springer
-
Fleischer F, Beil M, Kazda M, Schmidt V. Analysis of spatial point patterns in microscopic and macroscopic biological image data. Case Studies in Spatial Point Process Modeling, New York: Springer; 2006, 235-260.
-
(2006)
Case Studies in Spatial Point Process Modeling
, pp. 235-260
-
-
Fleischer, F.1
Beil, M.2
Kazda, M.3
Schmidt, V.4
-
66
-
-
0000313850
-
The second-order analysis of stationary point processes
-
Ripley B. The second-order analysis of stationary point processes. J Appl Probability 1976, 13:255-266.
-
(1976)
J Appl Probability
, vol.13
, pp. 255-266
-
-
Ripley, B.1
-
68
-
-
0033370936
-
Finding the missing link between landscape structure and population dynamics: a spatially explicit perspective
-
Wiegand T, Moloney K, Naves J, Knauer F. Finding the missing link between landscape structure and population dynamics: a spatially explicit perspective. Am Nat 1999, 154:605-627.
-
(1999)
Am Nat
, vol.154
, pp. 605-627
-
-
Wiegand, T.1
Moloney, K.2
Naves, J.3
Knauer, F.4
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