Trophic links between the acetogen Clostridium glycolicum kha and the fermentative anaerobe Bacteroides xylanolyticus KHb, isolated from Hawaiian forest soil

Applied and Environmental Microbiology

Volumn 77, Issue 17, 2011, Pages 6281-6285

  Hunger, Sindy ^a   Gößner, Anita S ^a   Drake, Harold L ^a  

^a UNIVERSITY OF BAYREUTH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

16S RRNA; BACTEROIDES; FOREST SOILS; GENE ANALYSIS;

CLOSTRIDIUM; ETHANOL; GENES; RNA; SUGARS;

SOILS;

ACETIC ACID DERIVATIVE; ALCOHOL; BACTERIAL DNA; BACTERIAL PROTEIN; HYDROGEN; RIBOSOME DNA; RNA 16S;

BACTERIUM; FERMENTATION; FOREST SOIL; GENETIC ANALYSIS; MICROBIAL ACTIVITY; POLYSACCHARIDE; SOIL MICROORGANISM;

ARTICLE; BACTEROIDES; CARBOHYDRATE METABOLISM; CHEMISTRY; CLASSIFICATION; CLOSTRIDIUM; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; TREE; UNITED STATES;

ACETIC ACIDS; BACTERIAL PROTEINS; BACTEROIDES; CARBOHYDRATE METABOLISM; CLOSTRIDIUM; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; ETHANOL; HAWAII; HYDROGEN; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; TREES;

HAWAIIAN ISLANDS;

BACTEROIDES; CLOSTRIDIUM GLYCOLICUM;

EID: 80052774851     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.05519-11     Document Type: Article

References (35)

1. Balk, M., T. van Gelder, S. A. Weelink, and A. J. M. Stams. 2008. (Per) chlorate reduction by the thermophilic bacterium Moorella perchloratireducens sp. nov., isolated from underground gas storage. Appl. Environ. Microbiol. 74:403-409.
2. Boga, H., and A. Brune. 2003. Hydrogen-dependent oxygen reduction by homoacetogenic bacteria isolated from termite guts. Appl. Environ. Microbiol. 69:779-786.
3. Boga, H. I., W. Ludwig, and A. Brune. 2003. Sporomusa aerivorans sp. nov., an oxygen-reducing homoacetogenic bacterium from a soil-feeding termite. Int. J. Syst. Evol. Microbiol. 53:1397-1404.
4. Chamkha, M., M. Labat, B. K. C. Patel, and J.-L. Garcia. 2001. Isolation of a cinnamic acid-metabolizing Clostridium glycolicum strain from oil mill wastewaters and emendation of the species description. Int. J. Syst. Evol. Microbiol. 51:2049-2054.
5. 2- and CO-dependent chemolithotrophic potentials of the acetogens Clostridium thermoaceticum and Acetogenium kivui. J. Bacteriol. 172:4464-4471.
6. Degelmann, D. M., S. Kolb, M. Dumont, J. C. Murrell, and H. L. Drake. 2009. Enterobacteriaceae facilitate the anaerobic degradation of glucose by a forest soil. FEMS Microbiol. Ecol. 68:312-319.
7. Drake, H. L., A. S. Gößner, and S. L. Daniel. 2008. Old acetogens, new light, p. 100-128. In J. Wiegel, R. J. Maier, and M. W. W. Adams (ed.), Incredible anaerobes: from physiology to genomics to fuels, vol. 1125. New York Academy of Science, New York, NY.
8. Drake, H. L., K. Küsel, and C. Matthies. 2006. Acetogenic prokaryotes, p. 354-420. In M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt (ed.), The prokaryotes, 3rd ed., vol. 2. Springer, New York, NY.
9. Fox, T. R., and N. B. Comerford. 1990. Low-molecular-weight organic acids in selected forest soils of the southeastern U. S. A. Soil Sci. Soc. Am. J. 54:1139-1144.
10. Gaston, L. W., and E. R. Stadtman. 1963. Fermentation of ethylene glycol by Clostridium glycolicum, sp. n. J. Bacteriol. 85:356-362.
11. Gößner, A. S., et al. 1999. Thermicanus aegyptius gen. nov., sp. nov., isolated from oxic soil, a fermentative microaerophile that grows commensally with the thermophilic acetogen Moorella thermoacetica. Appl. Environ. Microbiol. 65:5124-5133.
12. Gößner, A. S., et al. 2006. Trophic interactions of the aerotolerant anaerobe Clostridium intestinale and the acetogen Sporomusa rhizae sp. nov. isolated from roots of the black needlerush Juncus roemerianus. Microbiology 152:1209-1219.
13. Gregory, E. M., and D. D. Fanning. 1983. Effect of heme on Bacteroides distasonis catalase and aerotolerance. J. Bacteriol. 156:1012-1018.
14. Hunger, S., et al. 2011. Competing formate- and carbon dioxide-utilizing prokaryotes in an anoxic methane-emitting fen soil. Appl. Environ. Microbiol. 77:3773-3785.
15. Karnholz, A., K. Küsel, A. S. Gößner, A. Schramm, and H. L. Drake. 2002. Tolerance and metabolic response of acetogenic bacteria toward oxygen. Appl. Environ. Microbiol. 68:1005-1009.
16. Kuhner, C. H., et al. 1997. Sporomusa silvacetica sp. nov., an acetogenic bacterium isolated from aggregated forest soil. Int. J. Syst. Bacteriol. 47:352-358.
17. Küsel, K., and H. L. Drake. 1995. Effect of environmental parameters on the formation and turnover of acetate in forest soils. Appl. Environ. Microbiol. 61:3667-3675.
18. Küsel, K., et al. 2001. Physiological ecology of Clostridium glycolicum RD-1, an aerotolerant acetogen isolated from sea grass roots. Appl. Environ. Microbiol. 67:4734-4741.
19. Küsel, K., et al. 2002. Microbial reduction of Fe(III) and turnover of acetate in Hawaiian soils. FEMS Microbiol. Ecol. 40:73-81.
20. Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley and Sons Ltd., Chichester, United Kingdom.
21. Leaphart, A. B., and C. R. Lovell. 2001. Recovery and analysis of formyltetrahydrofolate synthetase gene sequences from natural populations of acetogenic bacteria. Appl. Environ. Microbiol. 67:1392-1395.
22. Liou, J. S.-C., D. L. Balkwill, G. R. Drake, and R. S. Tanner. 2005. Clostridium carboxidivorans sp. nov., a solvent-producing clostridium isolated from an agricultural settling lagoon, and reclassification of the acetogen Clostridium scatologenes strain SL1 as Clostridium drakei sp. nov. Int. J. Syst. Evol. Microbiol. 55:2085-2091.
23. Pan, N., and J. A. Imlay. 2001. How does oxygen inhibit central metabolism in the obligate anaerobe Bacteroides thetaiotaomicron? Mol. Microbiol. 39:1562-1571.
24. Peters, V., and R. Conrad. 1995. Methanogenic and other strictly anaerobic bacteria in desert soil and other oxic soils. Appl. Environ. Microbiol. 61:1673-1676.
25. Phillips, J. R., E. C. Clausen, and J. L. Gaddy. 1994. Synthesis gas as substrate for the biological production of fuels and chemicals. Appl. Biochem. Biotechnol. 46:145-157.
26. Reith, K., H. L. Drake, and K. Küsel. 2002. Anaerobic activities of bacteria and fungi in moderately acidic conifer and deciduous leaf litter. FEMS Microbiol. Ecol. 41:27-35.
27. Saxena, J., and R. S. Tanner. 2011. Effect of trace metals on ethanol production from synthesis gas by the ethanologenic acetogen, Clostridium rag- sdalei. J. Ind. Microbiol. Biotechnol. 38:513-521.
28. Scholten-Koerselman, I., F. Houwaard, P. Janssen, and A. J. B. Zehnder. 1986. Bacteroides xylanolyticus sp. nov., a xylanolytic bacterium from methane producing cattle manure. Antonie Van Leeuwenhoek 52:543-554.
29. Silaghi-Dumitrescu, R., et al. 2003. A flavodiiron protein and high molecular weight rubredoxin from Moorella thermoacetica with nitric oxide reductase activity. Biochemistry 42:2806-2815.
30. Smith, C. J., E. R. Rocha, and B. J. Paster. 2006. The medically important Bacteroides spp. in health and disease, p. 381-427. In M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt (ed.), The prokaryotes, 3rd ed., vol. 7. Springer, New York, NY.
31. Tally, F. P., P. R. Steward, V. L. Sutter, and J. E. Rosenblatt. 1975. Oxygen tolerance of fresh clinical anaerobic bacteria. J. Clin. Microbiol. 1:161-164.
32. Tang, Y. P., M. M. Dallas, and M. H. Malamy. 1999. Characterization of the BatI (Bacteroides aerotolerance) operon in Bacteroides fragilis: isolation of a B. fragilis mutant with reduced aerotolerance and impaired growth in in vivo model systems. Mol. Microbiol. 32:139-149.
33. Tani, M., T. Higashi, and S. Nagatsuka. 1993. Dynamics of low-molecularweight aliphatic carboxylic acids (LACAs) in forest soils. I. Amount and composition of LACAs in different types of forest soils in Japan. Soil Sci. Plant Nutr. 39:485-495.
34. Tanner, R. S., L. M. Miller, and D. Yang. 1993. Clostridium ljungdahlii sp. nov., and acetogenic species in clostridial rRNA homology group I. Int. J. Syst. Bacteriol. 43:232-236.
35. Wagner, C., A. Grießhammer, and H. L. Drake. 1996. Acetogenic capacities and the anaerobic turnover of carbon in a Kansas prairie soil. Appl. Environ. Microbiol. 62:494-500.