Genome-wide association mapping in Norwegian Red cattle identifies quantitative trait loci for fertility and milk production on BTA12

Animal Genetics

Volumn 42, Issue 5, 2011, Pages 466-474

  Olsen, H G ^a   Hayes, B J ^a,b   Kent, M P ^a   Nome, T ^a   Svendsen, M ^a   Larsgard, A G ^a   Lien, S ^a  

^a NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

^b DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

Author keywords

association study; cattle; non return rate; quantitative trait loci; reproduction

Indexed keywords

ANIMAL; ARTICLE; CATTLE; FEMALE; GENETIC ASSOCIATION; GENETICS; LACTATION; MALE; MILK; PHYSIOLOGY; PREGNANCY; QUANTITATIVE TRAIT LOCUS; REPRODUCTION;

ANIMALS; CATTLE; FEMALE; GENOME-WIDE ASSOCIATION STUDY; LACTATION; MALE; MILK; PREGNANCY; QUANTITATIVE TRAIT LOCI; REPRODUCTION;

BOS;

EID: 80052736688     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2011.02179.x     Document Type: Article

References (38)

1. Ball R.D., (2005) Experimental designs for reliable detection of linkage disequilibrium in unstructured random population association studies. Genetics 170, 859-73. (Pubitemid 40980686)
2. Baret P.V., Knott S.A., &, Visscher P.M., (1998) On the use of linear regression and maximum likelihood for QTL mapping in half-sib designs. Genetical Research 72, 149-58. (Pubitemid 28563162)
3. Barrett J.C., Fry B., Maller J., &, Daly M.J., (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21, 263-5. (Pubitemid 40202029)
4. Cohen-Zinder M., Seroussi E., Larkin D.M., et al. (2005) Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle. Genome Research 15, 936-44. (Pubitemid 40994213)
5. Dematawewa C.M., &, Berger P.J., (1998) Genetic and phenotypic parameters for 305-day yield, fertility, and survival in Holsteins. Journal of Dairy Science 81, 2700-9. (Pubitemid 128444939)
6. Francis S.M., Bergsied J., Isaac C.E., et al. (2009) A functional connection between pRB and transforming growth factor β in growth inhibition and mammary gland development. Molecular and Cellular Biology 29, 4455-66.
7. Gallie B.L., &, Phillips R.A., (1982) Multiple manifestations of the retinoblastoma gene. Birth Defects Original Article Series 18, 689-701. (Pubitemid 13185902)
8. Gilmour A.R., Cullis B.R., Welham S.J., &, Thompson R., (2001) ASREML Reference Manual. New South Wales Agriculture, NSW, Australia.
9. Green P., Falls K., &, Crooks S., (1990) Documentation for CRIMAP, Version 2.4. Washington University School of Medicine, St Louis, MO.
10. Grisart B., Farnir F., Karim L., et al. (2004) Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition. Proceedings of the National Academy of Sciences of the United States of America 101, 2398-403. (Pubitemid 38269323)
11. Hanahan D., &, Weinberg R.A., (2000) The hallmarks of cancer. Cell 100, 57-70. (Pubitemid 30046295)
12. Hayes B.J., Bowman P.J., Chamberlain A.J., &, Goddard M.E., (2009) Genomic selection in dairy cattle: progress and challenges. Journal of Dairy Science 92, 433-43.
13. Hernandez-Sanchez J., Grunchec J.-A., &, Knott S., (2009) A web application to perform linkage disequilibrium and linkage analyses on a computational grid. Bioinformatics 25, 1377-83.
14. Höglund J.K., Guldbrandtsen B., Su G., Thomsen B., &, Lund M.S., (2009) Genome scan detects quantitative trait loci affecting female fertility traits in Danish and Swedish Holstein cattle. Journal of Dairy Science 92, 2136-43.
15. Holmberg M., &, Andersson-Eklund L., (2006) Quantitative trait loci affecting fertility and calving traits in Swedish dairy cattle. Journal of Dairy Science 89, 3664-71. (Pubitemid 44306012)
16. Holmberg M., Sahana G., &, Andersson-Eklund L., (2007) Fine mapping of a quantitative trait locus on chromosome 9 affecting non-return rate in Swedish dairy cattle. Journal of Animal Breeding and Genetics 124, 257-63. (Pubitemid 47404343)
17. Khatkar M.S., Thompson P.C., Tammen I., &, Raadsma H.W., (2004) Quantitative trait loci mapping in dairy cattle, review and meta-analysis. Genetics Selection Evolution 36, 163-90. (Pubitemid 38272284)
18. Larsgard A.G., (2008) 59th Annual Meeting of the EAAP, Book of abstracts No 14, 77.
19. Liu Y., Qin X., Song X.Z., et al. (2009) Bos taurus genome assembly. BMC Genomics 10, 180.
20. Meuwissen T.H.E., &, Goddard M.E., (2001) Prediction of identity by descent probabilities from marker-haplotypes. Genetics Selection Evolution 33, 605-34. (Pubitemid 34072352)
21. Meuwissen T.H.E., &, Goddard M.E., (2007) Multipoint identity-by-descent prediction using dense markers to map quantitative trait loci and estimate effective population size. Genetics 176, 2551-60. (Pubitemid 47360682)
22. Meuwissen T.H.E., Hayes B.J., &, Goddard M.E., (2001) Prediction of total genetic value using genome wide dense marker maps. Genetics 157, 1819-29. (Pubitemid 32298846)
23. Meuwissen T.H.E., Karlsen A., Lien S., Olsaker I., &, Goddard M.E., (2002) Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping. Genetics 161, 373-9. (Pubitemid 34564064)
24. Mosig M.O., Lipkin E., Khutoreskaya G., Tchourzyna E., Soller M., &, Friedmann A., (2001) A whole genome scan for quantitative trait loci affecting milk protein percentage in Israeli-Holstein cattle by means of selective milk DNA pooling in a daughter design, using an adjusted false discovery rate criterion. Genetics 157, 1683-98. (Pubitemid 32298836)
25. Nilsen H., Olsen H.G., Hayes B.J., Sehested E., Svendsen M., Nome T., Meuwissen T., &, Lien S., (2009) Casein haplotypes and their association with milk production traits in Norwegian Red cattle. Genetics Selection Evolution 41, 24.
26. Olsen H.G., Nilsen H., Hayes B., Berg P.R., Svendsen M., Lien S., &, Meuwissen T., (2007) Genetic support for a quantitative trait nucleotide in the ABCG2 gene affecting milk composition of dairy cattle. BMC Genetics 8, 32.
27. Olsen H.G., Hayes B.J., Kent M.P., Nome T., Svendsen M., &, Lien S., (2010) A genome-wide association study for QTL affecting direct and maternal effects of stillbirth and dystocia in cattle. Animal Genetics 41, 273-80.
28. Pryce J.E., Veerkamp R.F., Thompson R., Hill W.G., &, Simm G., (1997) Genetic aspects of common health disorders and measures of fertility in Holstein Friesian cattle. Animal Science 65, 353-60.
29. Roxström A., Strandberg E., Berglund B., Emanuelson U., &, Philipsson J., (2001) Genetic and environmental correlations among female fertility traits and milk production in different parities of Swedish Red and White dairy cattle. Acta Agriculturae Scandinavica. Section A. 51, 7-14.
30. Schrooten C., Bovenhuis H., Coppieters W., &, Arendonk J.A.M., (2000) Whole genome scan to detect quantitative trait loci for conformation and functional traits in dairy cattle. Journal of Dairy Science 83, 795-806.
31. Schulman N.F., Viitala S.M., de Koning D.J., Virta J., Mäki-Tanila A., &, Vilkki J.H., (2004) Quantitative trait loci for health traits in Finnish Ayrshire cattle. Journal of Dairy Science 87, 443-9. (Pubitemid 44145415)
32. Schulman N.F., Sahana G., Lund M.S., Viitala S.M., &, Vilkki J.H., (2008) Quantitative trait loci for fertility traits in Finnish Ayrshire cattle. Genetics Selection Evolution 40, 195-214. (Pubitemid 351317199)
33. Sørensen A.C., Lawlor T., &, Ruiz F., (2007) A survey on fertility in the Holstein populations of the world. In: Proceedings of Fertility in Dairy Cows-Bridging the Gaps, 17 pp. Liverpool Hope University, Liverpool, UK.
34. Stephens M., Smith N., &, Donnelly P., (2001) A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics 68, 978-89. (Pubitemid 32289743)
35. The Bovine HapMap Consortium. (2009) Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science 324, 528-32.
36. Viitala S.M., Schulman N.F., de Koning D.J., Elo K., Kinos R., Virta A., Virta J., Mäki-Tanila A., &, Vilkki J.H., (2003) Quantitative trait loci affecting milk production traits in Finnish Ayrshire dairy cattle. Journal of Dairy Science 86, 1828-36. (Pubitemid 38995076)
37. Wu L., de Bruin A., Saavedra H.I., et al. (2003) Extra-embryonic function of Rb is essential for embryonic development and viability. Nature 421, 942-7. (Pubitemid 36288025)
38. Zhao H.H., Fernando R.L., &, Dekkers J.C.M., (2007) Power and precision of alternate methods for linkage disequilibrium mapping of quantitative trait loci. Genetics 175, 1975-86. (Pubitemid 46789978)