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Volumn 27, Issue 18, 2011, Pages 2598-2600

RseqFlow: Workflows for RNA-Seq data analysis

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

EID: 80052714674     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr441     Document Type: Article
Times cited : (22)

References (15)
  • 1
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders,S. and Huber,W. (2010) Differential expression analysis for sequence count data. Genome Biol., 11, R106.
    • (2010) Genome Biol. , vol.11
    • Anders, S.1    Huber, W.2
  • 2
    • 77955308515 scopus 로고    scopus 로고
    • Scaling up workflow-based applications
    • Callaghan,S. et al. (2010) Scaling up workflow-based applications. J. Comput. Syst. Sci., 76, 428-446.
    • (2010) J. Comput. Syst. Sci. , vol.76 , pp. 428-446
    • Callaghan, S.1
  • 3
    • 70349886587 scopus 로고    scopus 로고
    • PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds
    • Chen,Y. et al. (2009) PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds. Bioinformatics, 25, 2514-2521.
    • (2009) Bioinformatics , vol.25 , pp. 2514-2521
    • Chen, Y.1
  • 4
    • 29644434815 scopus 로고    scopus 로고
    • Pegasus: a framework for mapping complex scientific workflows onto distributed systems
    • Deelman,E. et al. (2005) Pegasus: a framework for mapping complex scientific workflows onto distributed systems. Sci. Program. J., 13, 219-237.
    • (2005) Sci. Program. J. , vol.13 , pp. 219-237
    • Deelman, E.1
  • 5
    • 84892262261 scopus 로고    scopus 로고
    • Pegasus: mapping large-scale workflows to distributed resources
    • Part III, Springer, London
    • Deelman,E. et al. (2007) Pegasus: mapping large-scale workflows to distributed resources. In Workflows for e-Science, Part III, Springer, London, pp. 376-394.
    • (2007) Workflows for e-Science , pp. 376-394
    • Deelman, E.1
  • 6
    • 79952314593 scopus 로고    scopus 로고
    • A pipeline for RNA-seq data processing and quality assessment
    • Goncalves,A. et al. (2011) A pipeline for RNA-seq data processing and quality assessment. Bioinformatics, 27, 867-869.
    • (2011) Bioinformatics , vol.27 , pp. 867-869
    • Goncalves, A.1
  • 7
    • 78651426148 scopus 로고    scopus 로고
    • RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries
    • Habegger,L. et al. (2011) RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries. Bioinformatics, 27, 281-283.
    • (2011) Bioinformatics , vol.27 , pp. 281-283
    • Habegger, L.1
  • 8
    • 64549119707 scopus 로고    scopus 로고
    • Statistical inferences for isoform expression in RNASeq
    • Jiang,H. and Wong,W.H. (2009) Statistical inferences for isoform expression in RNASeq. Bioinformatics, 25, 1026-1032.
    • (2009) Bioinformatics , vol.25 , pp. 1026-1032
    • Jiang, H.1    Wong, W.H.2
  • 10
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead,B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1
  • 11
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li,H. and Durbin,R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 12
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni,J. et al. (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays, Genome Res., 18, 1509-1517.
    • (2008) Genome Res. , vol.18 , pp. 1509-1517
    • Marioni, J.1
  • 13
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • Mortazavi,A. et al. (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Method, 5, 621-628.
    • (2008) Nature Method , vol.5 , pp. 621-628
    • Mortazavi, A.1
  • 14
    • 75249099173 scopus 로고    scopus 로고
    • inGAP: an integrated next-generation genome analysis pipeline
    • Qi,J. et al. (2010) inGAP: an integrated next-generation genome analysis pipeline. Bioinformatics, 26, 127-129.
    • (2010) Bioinformatics , vol.26 , pp. 127-129
    • Qi, J.1
  • 15
    • 85052549687 scopus 로고    scopus 로고
    • A two-parameter generalized Poisson model to improve the analysis of RNA-seq data
    • Srivastava,S. and Chen,L. (2010) A two-parameter generalized Poisson model to improve the analysis of RNA-seq data. Nucleic Acids Res., 38, e170.
    • (2010) Nucleic Acids Res. , vol.38
    • Srivastava, S.1    Chen, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.