-
1
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders,S. and Huber,W. (2010) Differential expression analysis for sequence count data. Genome Biol., 11, R106.
-
(2010)
Genome Biol.
, vol.11
-
-
Anders, S.1
Huber, W.2
-
2
-
-
77955308515
-
Scaling up workflow-based applications
-
Callaghan,S. et al. (2010) Scaling up workflow-based applications. J. Comput. Syst. Sci., 76, 428-446.
-
(2010)
J. Comput. Syst. Sci.
, vol.76
, pp. 428-446
-
-
Callaghan, S.1
-
3
-
-
70349886587
-
PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds
-
Chen,Y. et al. (2009) PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds. Bioinformatics, 25, 2514-2521.
-
(2009)
Bioinformatics
, vol.25
, pp. 2514-2521
-
-
Chen, Y.1
-
4
-
-
29644434815
-
Pegasus: a framework for mapping complex scientific workflows onto distributed systems
-
Deelman,E. et al. (2005) Pegasus: a framework for mapping complex scientific workflows onto distributed systems. Sci. Program. J., 13, 219-237.
-
(2005)
Sci. Program. J.
, vol.13
, pp. 219-237
-
-
Deelman, E.1
-
5
-
-
84892262261
-
Pegasus: mapping large-scale workflows to distributed resources
-
Part III, Springer, London
-
Deelman,E. et al. (2007) Pegasus: mapping large-scale workflows to distributed resources. In Workflows for e-Science, Part III, Springer, London, pp. 376-394.
-
(2007)
Workflows for e-Science
, pp. 376-394
-
-
Deelman, E.1
-
6
-
-
79952314593
-
A pipeline for RNA-seq data processing and quality assessment
-
Goncalves,A. et al. (2011) A pipeline for RNA-seq data processing and quality assessment. Bioinformatics, 27, 867-869.
-
(2011)
Bioinformatics
, vol.27
, pp. 867-869
-
-
Goncalves, A.1
-
7
-
-
78651426148
-
RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries
-
Habegger,L. et al. (2011) RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries. Bioinformatics, 27, 281-283.
-
(2011)
Bioinformatics
, vol.27
, pp. 281-283
-
-
Habegger, L.1
-
8
-
-
64549119707
-
Statistical inferences for isoform expression in RNASeq
-
Jiang,H. and Wong,W.H. (2009) Statistical inferences for isoform expression in RNASeq. Bioinformatics, 25, 1026-1032.
-
(2009)
Bioinformatics
, vol.25
, pp. 1026-1032
-
-
Jiang, H.1
Wong, W.H.2
-
9
-
-
78650814174
-
Data sharing options for scientific workflows on Amazon EC2
-
IEEE Computer Society Washington, DC, USA
-
Juve,G. et al. (2010) Data sharing options for scientific workflows on Amazon EC2. In Proceedings of the 2010 ACM/IEEE International Conference for HighPerformance Computing, Networking, Storage and Analysis, IEEE Computer Society Washington, DC, USA.
-
(2010)
Proceedings of the 2010 ACM/IEEE International Conference for HighPerformance Computing, Networking, Storage and Analysis
-
-
Juve, G.1
-
10
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead,B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
-
11
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li,H. and Durbin,R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
12
-
-
50649089207
-
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni,J. et al. (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays, Genome Res., 18, 1509-1517.
-
(2008)
Genome Res.
, vol.18
, pp. 1509-1517
-
-
Marioni, J.1
-
13
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi,A. et al. (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Method, 5, 621-628.
-
(2008)
Nature Method
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
-
14
-
-
75249099173
-
inGAP: an integrated next-generation genome analysis pipeline
-
Qi,J. et al. (2010) inGAP: an integrated next-generation genome analysis pipeline. Bioinformatics, 26, 127-129.
-
(2010)
Bioinformatics
, vol.26
, pp. 127-129
-
-
Qi, J.1
-
15
-
-
85052549687
-
A two-parameter generalized Poisson model to improve the analysis of RNA-seq data
-
Srivastava,S. and Chen,L. (2010) A two-parameter generalized Poisson model to improve the analysis of RNA-seq data. Nucleic Acids Res., 38, e170.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Srivastava, S.1
Chen, L.2
|