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Volumn 13, Issue , 2008, Pages 456-465

Suffix tree characterization of maximal motifs in biological sequences

Author keywords

Biological sequences; Maximal motifs; Suffix trees

Indexed keywords

APPROXIMATION ALGORITHMS; BIRDS; FORESTRY; TREES (MATHEMATICS);

EID: 80052710996     PISSN: 18650929     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-3-540-70600-7_35     Document Type: Article
Times cited : (4)

References (12)
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  • 4
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    • Kolpakov, R.M., Kucherov, G.: Finding approximate repetitions under hamming distance. In: ESA, pp. 170-181 (2001)
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    • Kurtz, S., Ohlebusch, E., Schleiermacher, C., Stoye, J., Giegerich, R.: Computation and visualization of degenerate repeats in complete genomes. In: ISMB, pp. 228-238 (2000)
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    • Kurtz, S.1    Ohlebusch, E.2    Schleiermacher, C.3    Stoye, J.4    Giegerich, R.5
  • 6
    • 0033677426 scopus 로고    scopus 로고
    • Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory consensus identification
    • Marsan, L., Sagot, M.-F.: Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory consensus identification. J. Comp. Bio. 7, 345-360 (2001)
    • (2001) J. Comp. Bio , vol.7 , pp. 345-360
    • Marsan, L.1    Sagot, M.-F.2
  • 7
    • 0016942292 scopus 로고
    • A space-economical suffix tree construction algorithm
    • McCreight, E.: A space-economical suffix tree construction algorithm. J. ACM 23(2), 262-272 (1976)
    • (1976) J. ACM , vol.23 , Issue.2 , pp. 262-272
    • McCreight, E.1
  • 8
    • 3242884167 scopus 로고    scopus 로고
    • Weeder web: Discovery of transcription factor binding sites in a set of sequences from co-regulated genes
    • Pavesi, G., Mereghetti, P., Mauri, G., Pesole, G.: Weeder web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes. Nucleic Acids Research 32, 199-203 (2004)
    • (2004) Nucleic Acids Research , vol.32 , pp. 199-203
    • Pavesi, G.1    Mereghetti, P.2    Mauri, G.3    Pesole, G.4
  • 9
    • 80053455778 scopus 로고    scopus 로고
    • Spelling approximate repeated or common motifs using a suffix tree
    • Sagot, M.-F.: Spelling approximate repeated or common motifs using a suffix tree. In: LATIN, pp. 374-390 (1998)
    • (1998) LATIN , pp. 374-390
    • Sagot, M.-F.1
  • 10
    • 0001704377 scopus 로고
    • On-line construction of suffix trees
    • Ukkonen, E.:On-line construction of suffix trees. Algorithmica 14(3), 249-260 (1995)
    • (1995) Algorithmica , vol.14 , Issue.3 , pp. 249-260
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  • 11
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    • Structural analysis of gapped motifs of a string
    • Ukkonen, E.: Structural analysis of gapped motifs of a string. In: MFCS, pp. 681-690 (2007)
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  • 12
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    • Inferring regulatory elements from a whole genome an application to the analysis of the genome of helicobacter pylori sigma 80 family of promoter signals
    • Vanet, A., Marsan, L., Labigne, A., Sagot, M.-F.: Inferring regulatory elements from a whole genome. an application to the analysis of the genome of helicobacter pylori sigma 80 family of promoter signals. J. of Mol. Biol. 297, 335-353 (2000)
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.