메뉴 건너뛰기




Volumn 1380, Issue , 1998, Pages 374-390

Spelling approximate repeated or common motifs using a suffix tree

Author keywords

[No Author keywords available]

Indexed keywords

HAMMING DISTANCE;

EID: 80053455778     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/bfb0054337     Document Type: Conference Paper
Times cited : (137)

References (25)
  • 1
    • 84976680267 scopus 로고
    • A new approach to text searching
    • R. Baeza-Yates and G. H. Gonnet. A new approach to text searching. Commun. ACM, 35:74-82, 1992.
    • (1992) Commun. ACM , vol.35 , pp. 74-82
    • Baeza-Yates, R.1    Gonnet, G.H.2
  • 2
    • 0028964865 scopus 로고
    • Generalized suffix trees for biological sequence data: Applications and implementations
    • IEEE Computer Society Press
    • P. Bieganski, J. Riedl, J. V. Carlis, and E.M. Retzel. Generalized suffix trees for biological sequence data: applications and implementations. In Proc. of the 27th Haruai Int. Conf. on Systems Sci., pages 35-44. IEEE Computer Society Press, 1994.
    • (1994) Proc. Of the 27Th Haruai Int. Conf. On Systems Sci , pp. 35-44
    • Bieganski, P.1    Riedl, J.2    Carlis, J.V.3    Retzel, E.M.4
  • 4
  • 5
    • 0001444363 scopus 로고
    • An optimal algorithm for computing the repetitions in a word
    • M. Crochemore. An optimal algorithm for computing the repetitions in a word. Inf. Proc. Letters, 12:244-250, 1981.
    • (1981) Inf. Proc.Letters , vol.12 , pp. 244-250
    • Crochemore, M.1
  • 7
    • 0022358896 scopus 로고
    • Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli
    • D. J. Galas, M. Eggert, and M. S. Waterman. Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli. J. Mol. Biol, 186:117-128, 1985.
    • (1985) J. Mol. Biol , vol.186 , pp. 117-128
    • Galas, D.J.1    Eggert, M.2    Waterman, M.S.3
  • 9
    • 85006627991 scopus 로고
    • Color set size problem with applications to string matching
    • In A. Apostolico, M. Crochemore, Z. Galil, and U. Manber, editors, Springer-Verlag
    • L. C. K. Hui. Color set size problem with applications to string matching. In A. Apostolico, M. Crochemore, Z. Galil, and U. Manber, editors, Combinatorial Pattern Matching, volume 644 of Lecture Notes in Computer Science, pages 230-243. Springer-Verlag, 1992.
    • (1992) Combinatorial Pattern Matching, Volume 644 of Lecture Notes in Computer Science , pp. 230-243
    • Hui, L.1
  • 10
    • 0025320805 scopus 로고
    • An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences
    • C. E. Lawrence and A. A. Reilly. An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences. Proteins: struct., fund., and genetics, 7:41-51, 1990.
    • (1990) Proteins: Struct., Fund., and Genetics , vol.7 , pp. 41-51
    • Lawrence, C.E.1    Reilly, A.A.2
  • 11
    • 77957219723 scopus 로고
    • A fast word search algorithm for the representation of sequence similarity in genomic DNA
    • C. Lefevre and J.-E. Ikeda. A fast word search algorithm for the representation of sequence similarity in genomic DNA. Nucleic Acids Res., 22:404-411, 1994.
    • (1994) Nucleic Acids Res , vol.22 , pp. 404-411
    • Lefevre, C.1    Ikeda, J.-E.2
  • 12
    • 0016942292 scopus 로고
    • A space-economical suffix tree construction algorithm
    • E. M. McCreight. A space-economical suffix tree construction algorithm. J. ACM, 23:262-272, 1976.
    • (1976) J. ACM , vol.23 , pp. 262-272
    • McCreight, E.M.1
  • 13
    • 0028516571 scopus 로고
    • A sublinear algorithm for approximate keyword searching
    • E. W. Myers. A sublinear algorithm for approximate keyword searching. Algorith-mica, 12:345-374, 1994.
    • (1994) Algorith-Mica , vol.12 , pp. 345-374
    • Myers, E.W.1
  • 15
    • 0001936534 scopus 로고
    • Searching for repeated words in a text allowing for mismatches and gaps
    • In R. Baeza-Yates and U. Manber, editors, Viflas del Mar, Chili, University of Chili
    • M.-F. Sagot, V. Escalier, A. Viari, and H. Soldano. Searching for repeated words in a text allowing for mismatches and gaps. In R. Baeza-Yates and U. Manber, editors, Second South American Workshop on String Processing, pages 87-100, Viflas del Mar, Chili, 1995. University of Chili.
    • (1995) Second South American Workshop on String Processing , pp. 87-100
    • Sagot, M.-F.1    Escalier, V.2    Viari, A.3    Soldano, H.4
  • 17
    • 84957713103 scopus 로고    scopus 로고
    • A double combinatorial approach to discovering patterns in biological sequences
    • In D. Hirschberg and G. Myers, editors, Springer-Verlag
    • M.-F. Sagot and A. Viari. A double combinatorial approach to discovering patterns in biological sequences. In D. Hirschberg and G. Myers, editors, Combinatorial Pattern Matching, volume 1075 of Lecture Notes in Computer Science, pages 186-208. Springer-Verlag, 1996.
    • (1996) Combinatorial Pattern Matching, Volume 1075 of Lecture Notes in Computer Science , pp. 186-208
    • Sagot, M.-F.1    Viari, A.2
  • 18
    • 0031163959 scopus 로고    scopus 로고
    • Multiple comparison: A peptide matching approach
    • presented at Combinatorial Pattern Matching 1995
    • M.-F. Sagot, A. Viari, and H. Soldano. Multiple comparison: a peptide matching approach. Theoret. Comput. Sci., 180:115-137, 1997. presented at Combinatorial Pattern Matching 1995.
    • (1997) Theoret. Comput. Sci , vol.180 , pp. 115-137
    • Sagot, M.-F.1    Viari, A.2    Soldano, H.3
  • 20
    • 85026758927 scopus 로고
    • Approximate string matching over suffix trees
    • In Z. Galil A. Apos-tolico, M. Crochemore and U. Manber, editors, Springer-Verlag
    • E. Ukkonen. Approximate string matching over suffix trees. In Z. Galil A. Apos-tolico, M. Crochemore and U. Manber, editors, Combinatorial Pattern Matching, volume 684 of Lecture Notes in Computer Science, pages 228-242. Springer-Verlag, 1993.
    • (1993) Combinatorial Pattern Matching, Volume 684 of Lecture Notes in Computer Science , pp. 228-242
    • Ukkonen, E.1
  • 21
    • 0023057161 scopus 로고
    • Multiple sequence alignments by consensus
    • M. S. Waterman. Multiple sequence alignments by consensus. Nucleic Acids Res., 14:9095-9102, 1986.
    • (1986) Nucleic Acids Res , vol.14 , pp. 9095-9102
    • Waterman, M.S.1
  • 22
    • 0041748378 scopus 로고
    • Consensus patterns in sequences
    • In M. S. Waterman, editor, CRC Press
    • M. S. Waterman. Consensus patterns in sequences. In M. S. Waterman, editor, Mathematical Methods for DNA Sequences, pages 93-116. CRC Press, 1989.
    • (1989) Mathematical Methods for DNA Sequences , pp. 93-116
    • Waterman, M.S.1
  • 23
    • 0021665479 scopus 로고
    • Pattern recognition in several sequences: Consensus and alignment
    • M. S. Waterman, R. Arratia, and D. J. Galas. Pattern recognition in several sequences: consensus and alignment. Bull. Math. Biol., 46:515-527, 1984.
    • (1984) Bull. Math. Biol , vol.46 , pp. 515-527
    • Waterman, M.S.1    Arratia, R.2    Galas, D.J.3
  • 25
    • 84976654685 scopus 로고
    • Fast text searching allowing errors
    • S. Wu and U. Manber. Fast text searching allowing errors. Commun. ACM, 35:83-91, 1992.
    • (1992) Commun. ACM , vol.35 , pp. 83-91
    • Wu, S.1    Manber, U.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.