-
2
-
-
0034243892
-
Mechanism of the block to hybridization and selfing between the sympatric ascidians Ciona intestinalis and Ciona savignyi
-
Byrd J., Lambert C. C., Mechanism of the block to hybridization and selfing between the sympatric ascidians Ciona intestinalis and Ciona savignyi Molecular Reproduction and Development 2000 56 4 541
-
(2000)
Molecular Reproduction and Development
, vol.56
, Issue.4
, pp. 541
-
-
Byrd, J.1
Lambert, C.C.2
-
3
-
-
10944248926
-
Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance
-
DOI 10.1101/gr.2964504
-
Johnson D. S., Davidson B., Brown C. D., Smith W. C., Sidow A., Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance Genome Research 2004 14 12 2448 2456 (Pubitemid 40012228)
-
(2004)
Genome Research
, vol.14
, Issue.12
, pp. 2448-2456
-
-
Johnson, D.S.1
Davidson, B.2
Brown, C.D.3
Smith, W.C.4
Sidow, A.5
-
4
-
-
34547152781
-
Cryptic speciation in a model invertebrate chordate
-
DOI 10.1073/pnas.0610158104
-
Caputi L., Andreakis N., Mastrototaro F., Cirino P., Vassillo M., Sordino P., Cryptic speciation in a model invertebrate chordate Proceedings of the National Academy of Sciences of the United States of America 2007 104 22 9364 9369 (Pubitemid 47185785)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.22
, pp. 9364-9369
-
-
Caputi, L.1
Andreakis, N.2
Mastrototaro, F.3
Cirino, P.4
Vassillo, M.5
Sordino, P.6
-
5
-
-
27744569273
-
Genomic approaches reveal unexpected genetic divergence within Ciona intestinalis
-
DOI 10.1007/s00239-005-0009-3
-
Suzuki M. M., Nishikawa T., Bird A., Genomic approaches reveal unexpected genetic divergence within Ciona intestinalis Journal of Molecular Evolution 2005 61 5 627 635 (Pubitemid 41598609)
-
(2005)
Journal of Molecular Evolution
, vol.61
, Issue.5
, pp. 627-635
-
-
Suzuki, M.M.1
Nishikawa, T.2
Bird, A.3
-
6
-
-
34248385692
-
Extreme genomic variation in a natural population
-
DOI 10.1073/pnas.0700890104
-
Small K. S., Brudno M., Hill M. M., Sidow A., Extreme genomic variation in a natural population Proceedings of the National Academy of Sciences of the United States of America 2007 104 13 5698 5703 (Pubitemid 47175743)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.13
, pp. 5698-5703
-
-
Small, K.S.1
Brudno, M.2
Hill, M.M.3
Sidow, A.4
-
7
-
-
23744446773
-
Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
-
DOI 10.1101/gr.3722605
-
Vinson J. P., Jaffe D. B., ONeill K., Assembly of polymorphic genomes: algorithms and application to Ciona savignyi Genome Research 2005 15 8 1127 1135 (Pubitemid 41126868)
-
(2005)
Genome Research
, vol.15
, Issue.8
, pp. 1127-1135
-
-
Vinson, J.P.1
Jaffe, D.B.2
O'Neill, K.3
Karlsson, E.K.4
Stange-Thomann, N.5
Anderson, S.6
Mesirov, J.P.7
Satoh, N.8
Satou, Y.9
Nusbaum, C.10
Birren, B.11
Galagan, J.E.12
Lander, E.S.13
-
8
-
-
33751193268
-
Huntingtin gene evolution in Chordata and its peculiar features in the ascidian Ciona genus
-
Gissi C., Pesole G., Cattaneo E., Tartari M., Huntingtin gene evolution in Chordata and its peculiar features in the ascidian Ciona genus BMC Genomics 2006 7 13 288 304
-
(2006)
BMC Genomics
, vol.7
, Issue.13
, pp. 288-304
-
-
Gissi, C.1
Pesole, G.2
Cattaneo, E.3
Tartari, M.4
-
9
-
-
2242464840
-
The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins
-
DOI 10.1126/science.1080049
-
Dehal P., Satou Y., Campbell R. K., The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins Science 2002 298 5601 2157 2167 (Pubitemid 35471235)
-
(2002)
Science
, vol.298
, Issue.5601
, pp. 2157-2167
-
-
Dehal, P.1
Satou, Y.2
Campbell, R.K.3
Chapman, J.4
Degnan, B.5
De Tomaso, A.6
Davidson, B.7
Di Gregorio, A.8
Gelpke, M.9
Goodstein, D.M.10
Harafuji, N.11
Hastings, K.E.M.12
Ho, I.13
Hotta, K.14
Huang, W.15
Kawashima, T.16
Lemaire, P.17
Martinez, D.18
Meinertzhagen, I.A.19
Necula, S.20
Nonaka, M.21
Putnam, N.22
Rash, S.23
Saiga, H.24
Satake, M.25
Terry, A.26
Yamada, L.27
Wang, H.-G.28
Awazu, S.29
Azumi, K.30
Boore, J.31
Branno, M.32
Chin-bow, S.33
DeSantis, R.34
Doyle, S.35
Francino, P.36
Keys, D.N.37
Haga, S.38
Hayashi, H.39
Hino, K.40
Imai, K.S.41
Inaba, K.42
Kano, S.43
Kobayashi, K.44
Kobayashi, M.45
Lee, B.-I.46
Makabe, K.W.47
Manohar, C.48
Matassi, G.49
Medina, M.50
Mochizuki, Y.51
Mount, S.52
Morishita, T.53
Miura, S.54
Nakayama, A.55
Nishizaka, S.56
Nomoto, H.57
Ohta, F.58
Oishi, K.59
Rigoutsos, I.60
Sano, M.61
Sasaki, A.62
Sasakura, Y.63
Shoguchi, E.64
Shin-i, T.65
Spagnuolo, A.66
Stainier, D.67
Suzuki, M.M.68
Tassy, O.69
Takatori, N.70
Tokuoka, M.71
Yagi, K.72
Yoshizaki, F.73
Wada, S.74
Zhang, C.75
Hyatt, P.D.76
Larimer, F.77
Detter, C.78
Doggett, N.79
Glavina, T.80
Hawkins, T.81
Richardson, P.82
Lucas, S.83
Kohara, Y.84
Levine, M.85
Satoh, N.86
Rokhsar, D.S.87
more..
-
10
-
-
33750995860
-
The genome of the sea urchin Strongylocentrotus purpuratus
-
DOI 10.1126/science.1133609
-
Sodergren E., Weinstock G. M., Davidson E. H., The genome of the sea urchin Strongylocentrotus purpuratus Science 2006 314 5801 941 952 (Pubitemid 44749930)
-
(2006)
Science
, vol.314
, Issue.5801
, pp. 941-952
-
-
Sodergren, E.1
Weinstock, G.M.2
Davidson, E.H.3
Cameron, R.A.4
Gibbs, R.A.5
Angerer, R.C.6
Angerer, L.M.7
Arnone, M.I.8
Burgess, D.R.9
Burke, R.D.10
Coffman, J.A.11
Dean, M.12
Elphick, M.R.13
Ettensohn, C.A.14
Foltz, K.R.15
Hamdoun, A.16
Hynes, R.O.17
Klein, W.H.18
Marzluff, W.19
McClay, D.R.20
Morris, R.L.21
Mushegian, A.22
Rast, J.P.23
Smith, L.C.24
Thorndyke, M.C.25
Vacquier, V.D.26
Wessel, G.M.27
Wray, G.28
Zhang, L.29
Elsik, C.G.30
Ermolaeva, O.31
Hlavina, W.32
Hofmann, G.33
Kitts, P.34
Landrum, M.J.35
Mackey, A.J.36
Maglott, D.37
Panopoulou, G.38
Poustka, A.J.39
Pruitt, K.40
Sapojnikov, V.41
Song, X.42
Souvorov, A.43
Solovyev, V.44
Wei, Z.45
Whittaker, C.A.46
Worley, K.47
Durbin, K.J.48
Shen, Y.49
Fedrigo, O.50
Garfield, D.51
Haygood, R.52
Primus, A.53
Satija, R.54
Severson, T.55
Gonzalez-Garay, M.L.56
Jackson, A.R.57
Milosavljevic, A.58
Tong, M.59
Killian, C.E.60
Livingston, B.T.61
Wilt, F.H.62
Adams, N.63
Belle, R.64
Carbonneau, S.65
Cheung, R.66
Cormier, P.67
Cosson, B.68
Croce, J.69
Fernandez-Guerra, A.70
Geneviere, A.-M.71
Goel, M.72
more..
-
11
-
-
45749086679
-
The amphioxus genome and the evolution of the chordate karyotype
-
DOI 10.1038/nature06967, PII NATURE06967
-
Putnam N. H., Butts T., Ferrier D. E. K., The amphioxus genome and the evolution of the chordate karyotype Nature 2008 453 7198 1064 1071 (Pubitemid 351888243)
-
(2008)
Nature
, vol.453
, Issue.7198
, pp. 1064-1071
-
-
Putnam, N.H.1
Butts, T.2
Ferrier, D.E.K.3
Furlong, R.F.4
Hellsten, U.5
Kawashima, T.6
Robinson-Rechavi, M.7
Shoguchi, E.8
Terry, A.9
Yu Jr., K.10
Benito-Gutierrez, E.11
Dubchak, I.12
Garcia-Fernandez, J.13
Gibson-Brown, J.J.14
Grigoriev, I.V.15
Horton, A.C.16
De Jong, P.J.17
Jurka, J.18
Kapitonov, V.V.19
Kohara, Y.20
Kuroki, Y.21
Lindquist, E.22
Lucas, S.23
Osoegawa, K.24
Pennacchio, L.A.25
Salamov, A.A.26
Satou, Y.27
Sauka-Spengler, T.28
Schmutz, J.29
Shin-I, T.30
Toyoda, A.31
Bronner-Fraser, M.32
Fujiyama, A.33
Holland, L.Z.34
Holland, P.W.H.35
Satoh, N.36
Rokhsar, D.S.37
more..
-
12
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul S. F., Madden T. L., Schffer A. A., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Research 1997 25 17 3389 3402 (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
13
-
-
33845883023
-
Paleontological evidence to date the tree of life
-
DOI 10.1093/molbev/msl150
-
Benton M. J., Donoghue P. C. J., Paleontological evidence to date the tree of life Molecular Biology and Evolution 2007 24 1 26 53 (Pubitemid 46026279)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.1
, pp. 26-53
-
-
Benton, M.J.1
Donoghue, P.C.J.2
-
14
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
DOI 10.1093/bioinformatics/btm404
-
Larkin M. A., Blackshields G., Brown N. P., Clustal W and Clustal X version 2.0 Bioinformatics 2007 23 21 2947 2948 (Pubitemid 350162903)
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
Mcgettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
16
-
-
0027453388
-
Simple methods for testing the molecular evolutionary clock hypothesis
-
Tajima F., Simple methods for testing the molecular evolutionary clock hypothesis Genetics 1993 135 2 599 607 (Pubitemid 23307610)
-
(1993)
Genetics
, vol.135
, Issue.2
, pp. 599-607
-
-
Tajima, F.1
-
17
-
-
0015927177
-
Generation time and genomic evolution in primates
-
Sarich V. M., Wilson A. C., Generation time and genomic evolution in primates Science 1973 179 4078 1144 1147
-
(1973)
Science
, vol.179
, Issue.4078
, pp. 1144-1147
-
-
Sarich, V.M.1
Wilson, A.C.2
-
18
-
-
0019726330
-
Pseudogenes as a paradigm of neutral evolution
-
DOI 10.1038/292237a0
-
Li W. H., Gojobori T., Nei M., Pseudogenes as a paradigm of neutral evolution Nature 1981 292 5820 237 239 (Pubitemid 11001836)
-
(1981)
Nature
, vol.292
, Issue.5820
, pp. 237-239
-
-
Li, W.H.1
Gojobori, T.2
Nei, M.3
-
19
-
-
0038153935
-
The first tunicate from the early Cambrian of South China
-
DOI 10.1073/pnas.1431177100
-
Chen J.-Y., Huang D.-Y., Peng Q.-Q., Chi H.-M., Wang X.-Q., Feng M., The first tunicate from the early Cambrian of South China Proceedings of the National Academy of Sciences of the United States of America 2003 100 14 8314 8318 (Pubitemid 36842542)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.14
, pp. 8314-8318
-
-
Chen, J.-Y.1
Huang, D.-Y.2
Peng, Q.-Q.3
Chi, H.-M.4
Wang, X.-Q.5
Feng, M.6
-
20
-
-
33750585486
-
Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida
-
DOI 10.1038/nature05241, PII NATURE05241
-
Bourlat S. J., Juliusdottir T., Lowe C. J., Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida Nature 2006 444 7115 85 88 (Pubitemid 44684760)
-
(2006)
Nature
, vol.444
, Issue.7115
, pp. 85-88
-
-
Bourlat, S.J.1
Juliusdottir, T.2
Lowe, C.J.3
Freeman, R.4
Aronowicz, J.5
Kirschner, M.6
Lander, E.S.7
Thorndyke, M.8
Nakano, H.9
Kohn, A.B.10
Heyland, A.11
Moroz, L.L.12
Copley, R.R.13
Telford, M.J.14
-
21
-
-
67149095243
-
Additional molecular support for the new chordate phylogeny
-
Delsuc F., Tsagkogeorga G., Lartillot N., Philippe H., Additional molecular support for the new chordate phylogeny Genesis 2008 46 11 592 604
-
(2008)
Genesis
, vol.46
, Issue.11
, pp. 592-604
-
-
Delsuc, F.1
Tsagkogeorga, G.2
Lartillot, N.3
Philippe, H.4
-
22
-
-
33644536713
-
Tunicates and not cephalochordates are the closest living relatives of vertebrates
-
DOI 10.1038/nature04336, PII N04336
-
Delsuc F., Brinkmann H., Chourrout D., Philippe H., Tunicates and not cephalochordates are the closest living relatives of vertebrates Nature 2006 439 7079 965 968 (Pubitemid 43292413)
-
(2006)
Nature
, vol.439
, Issue.7079
, pp. 965-968
-
-
Delsuc, F.1
Brinkmann, H.2
Chourrout, D.3
Philippe, H.4
-
23
-
-
42149157760
-
Broad phylogenomic sampling improves resolution of the animal tree of life
-
DOI 10.1038/nature06614, PII NATURE06614
-
Dunn C. W., Hejnol A., Matus D. Q., Broad phylogenomic sampling improves resolution of the animal tree of life Nature 2008 452 7188 745 749 (Pubitemid 351522763)
-
(2008)
Nature
, vol.452
, Issue.7188
, pp. 745-749
-
-
Dunn, C.W.1
Hejnol, A.2
Matus, D.Q.3
Pang, K.4
Browne, W.E.5
Smith, S.A.6
Seaver, E.7
Rouse, G.W.8
Obst, M.9
Edgecombe, G.D.10
Sorensen, M.V.11
Haddock, S.H.D.12
Schmidt-Rhaesa, A.13
Okusu, A.14
Kristensen, R.M.15
Wheeler, W.C.16
Martindale, M.Q.17
Giribet, G.18
-
24
-
-
33749516796
-
Large-scale sequencing and the new animal phylogeny
-
DOI 10.1016/j.tree.2006.08.004, PII S0169534706002655
-
Philippe H., Telford M. J., Large-scale sequencing and the new animal phylogeny Trends in Ecology and Evolution 2006 21 11 614 620 (Pubitemid 44528811)
-
(2006)
Trends in Ecology and Evolution
, vol.21
, Issue.11
, pp. 614-620
-
-
Philippe, H.1
Telford, M.J.2
-
25
-
-
53549107487
-
Chordate phylogeny and evolution: As not so simple three-taxon problem
-
Stach T., Chordate phylogeny and evolution: as not so simple three-taxon problem Journal of Zoology 2008 276 2 117 141
-
(2008)
Journal of Zoology
, vol.276
, Issue.2
, pp. 117-141
-
-
Stach, T.1
-
26
-
-
33646563756
-
Primary genetic linkage maps of the ascidian, Ciona intestinalis
-
DOI 10.2108/zsj.23.31
-
Kano S., Satoh N., Sordino P., Primary genetic linkage maps of the ascidian, Ciona intestinalis Zoological Science 2006 23 1 31 39 (Pubitemid 43726652)
-
(2006)
Zoological Science
, vol.23
, Issue.1
, pp. 31-39
-
-
Kano, S.1
Satoh, N.2
Sordino, P.3
-
27
-
-
2342536996
-
Estimating metazoan divergence times with a molecular clock
-
DOI 10.1073/pnas.0401670101
-
Peterson K. J., Lyons J. B., Nowak K. S., Takacs C. M., Wargo M. J., McPeek M. A., Estimating metazoan divergence times with a molecular clock Proceedings of the National Academy of Sciences of the United States of America 2004 101 17 6536 6541 (Pubitemid 38586009)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.17
, pp. 6536-6541
-
-
Peterson, K.J.1
Lyons, J.B.2
Nowak, K.S.3
Takacs, C.M.4
Wargo, M.J.5
McPeek, M.A.6
-
28
-
-
0036097948
-
Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data
-
Winchell C. J., Sullivan J., Cameron C. B., Swalla B. J., Mallatt J., Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data Molecular Biology and Evolution 2002 19 5 762 776 (Pubitemid 34521307)
-
(2002)
Molecular Biology and Evolution
, vol.19
, Issue.5
, pp. 762-776
-
-
Winchell, C.J.1
Sullivan, J.2
Cameron, C.B.3
Swalla, B.J.4
Mallatt, J.5
-
29
-
-
45749086679
-
The amphioxus genome and the evolution of the chordate karyotype
-
DOI 10.1038/nature06967, PII NATURE06967
-
Putnam N. H., Butts T., Ferrier D. E. K., The amphioxus genome and the evolution of the chordate karyotype Nature 2008 453 7198 1064 1071 (Pubitemid 351888243)
-
(2008)
Nature
, vol.453
, Issue.7198
, pp. 1064-1071
-
-
Putnam, N.H.1
Butts, T.2
Ferrier, D.E.K.3
Furlong, R.F.4
Hellsten, U.5
Kawashima, T.6
Robinson-Rechavi, M.7
Shoguchi, E.8
Terry, A.9
Yu Jr., K.10
Benito-Gutierrez, E.11
Dubchak, I.12
Garcia-Fernandez, J.13
Gibson-Brown, J.J.14
Grigoriev, I.V.15
Horton, A.C.16
De Jong, P.J.17
Jurka, J.18
Kapitonov, V.V.19
Kohara, Y.20
Kuroki, Y.21
Lindquist, E.22
Lucas, S.23
Osoegawa, K.24
Pennacchio, L.A.25
Salamov, A.A.26
Satou, Y.27
Sauka-Spengler, T.28
Schmutz, J.29
Shin-I, T.30
Toyoda, A.31
Bronner-Fraser, M.32
Fujiyama, A.33
Holland, L.Z.34
Holland, P.W.H.35
Satoh, N.36
Rokhsar, D.S.37
more..
-
30
-
-
0027308854
-
Body size, metabolic rate, generation time, and the molecular clock
-
Martin A. P., Palumbi S. R., Body size, metabolic rate, generation time, and the molecular clock Proceedings of the National Academy of Sciences of the United States of America 1993 90 9 4087 4091 (Pubitemid 23134171)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.9
, pp. 4087-4091
-
-
Martin, A.P.1
Palumbi, S.R.2
-
31
-
-
0037373563
-
The modern molecular clock
-
DOI 10.1038/nrg1020
-
Bromham L., Penny D., The modern molecular clock Nature Reviews Genetics 2003 4 3 216 224 (Pubitemid 36277637)
-
(2003)
Nature Reviews Genetics
, vol.4
, Issue.3
, pp. 216-224
-
-
Bromham, L.1
Penny, D.2
-
32
-
-
34548011452
-
Relationships between bone growth rate, body mass and resting metabolic rate in growing amniotes: A phylogenetic approach
-
DOI 10.1111/j.1095-8312.2007.00881.x
-
Montes L., Le Roy N., Perret M., De Buffrenil V., Castanet J., Cubo J., Relationships between bone growth rate, body mass and resting metabolic rate in growing amniotes: a phylogenetic approach Biological Journal of the Linnean Society 2007 92 1 63 76 (Pubitemid 47283746)
-
(2007)
Biological Journal of the Linnean Society
, vol.92
, Issue.1
, pp. 63-76
-
-
Montes, L.1
Le Roy, N.2
Perret, M.3
De Buffrenil, V.4
Castanet, J.5
Cubo, J.6
-
33
-
-
34547753508
-
Rates of genome evolution and branching order from whole genome analysis
-
DOI 10.1093/molbev/msm094
-
Huttley G. A., Wakefield M. J., Easteal S., Rates of genome evolution and branching order from whole genome analysis Molecular Biology and Evolution 2007 24 8 1722 1730 (Pubitemid 47236694)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1722-1730
-
-
Huttley, G.A.1
Wakefield, M.J.2
Easteal, S.3
-
34
-
-
0037177560
-
Evolutionary rate in the protein interaction network
-
DOI 10.1126/science.1068696
-
Fraser H. B., Hirsh A. E., Steinmetz L. M., Scharfe C., Feldman M. W., Evolutionary rate in the protein interaction network Science 2002 296 5568 750 752 (Pubitemid 34442006)
-
(2002)
Science
, vol.296
, Issue.5568
, pp. 750-752
-
-
Fraser, H.B.1
Hirsh, A.E.2
Steinmetz, L.M.3
Scharfe, C.4
Feldman, M.W.5
-
35
-
-
80052663125
-
-
Ohno S., 1970 New York, NY, USA Springer
-
Ohno S., 1970 New York, NY, USA Springer
-
-
-
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