메뉴 건너뛰기




Volumn 18, Issue 9, 2011, Pages 1231-1241

Restricted DCJ model: Rearrangement problems with chromosome reincorporation

Author keywords

chromosome reincorporation; DCJ; genome rearrangements; halving; median; NP completeness; sorting

Indexed keywords

ALGORITHM; BIOLOGICAL MODEL; CHROMOSOME; COMPUTER SIMULATION; CONFERENCE PAPER; GENE REARRANGEMENT; GENETICS; GENOME; MOLECULAR EVOLUTION; MUTATION; PLOIDY;

EID: 80052639343     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2011.0116     Document Type: Conference Paper
Times cited : (11)

References (15)
  • 2
    • 70349838725 scopus 로고    scopus 로고
    • Computation of perfect DCJ rearrangement scenarios with linear and circular chromosomes
    • Bérard, S., Chateau, A., Chauve, C., et al. 2009. Computation of perfect DCJ rearrangement scenarios with linear and circular chromosomes. J. Comput. Biol. 16, 1287-1309.
    • (2009) J. Comput. Biol. , vol.16 , pp. 1287-1309
    • Bérard, S.1    Chateau, A.2    Chauve, C.3
  • 4
    • 3843132934 scopus 로고    scopus 로고
    • The reversal median problem
    • Caprara, A. 2003. The reversal median problem. INFORMS J. Comp. 15, 93.
    • (2003) INFORMS J. Comp. , vol.15 , pp. 93
    • Caprara, A.1
  • 5
    • 0030285740 scopus 로고    scopus 로고
    • Sorting permutations by block-interchanges
    • DOI 10.1016/S0020-0190(96)00155-X, PII S002001909600155X
    • Christie, D.A. 1996. Sorting permutations by block-interchanges. Inf. Process. Lett. 60, 165-169. (Pubitemid 126383390)
    • (1996) Information Processing Letters , vol.60 , Issue.4 , pp. 165-169
    • Christie, D.A.1
  • 6
    • 0025419380 scopus 로고
    • Data structure useful for finding Hamiltonian cycles
    • DOI 10.1016/0304-3975(90)90053-K
    • Chrobak, M., Szymacha, T., and Krawczyk, A. 1990. A data structure useful for finding hamiltonian cycles. Theor. Comput. Sci. 71, 419-424. (Pubitemid 20686127)
    • (1990) Theoretical Computer Science , vol.71 , Issue.3 , pp. 419-424
    • Chrobak, M.1    Szymacha, T.2    Krawczyk, A.3
  • 7
    • 0037623969 scopus 로고    scopus 로고
    • The reconstruction of doubled genomes
    • El-Mabrouk, N., and Sankoff, D. 2003. The reconstruction of doubled genomes. SIAM J. Comput. 32, 754-792.
    • (2003) SIAM J. Comput. , vol.32 , pp. 754-792
    • El-Mabrouk, N.1    Sankoff, D.2
  • 8
    • 34548256218 scopus 로고    scopus 로고
    • Faster algorithms for sorting by transpositions and sorting by block interchanges
    • Feng, J., and Zhu, D. 2007. Faster algorithms for sorting by transpositions and sorting by block interchanges. ACM Trans. Algorithms 3.
    • (2007) ACM Trans. Algorithms , pp. 3
    • Feng, J.1    Zhu, D.2
  • 9
    • 15344349566 scopus 로고    scopus 로고
    • Sorting signed permutations by reversals, revisited
    • DOI 10.1016/j.jcss.2004.12.002, PII S0022000004001503, Bioinformatics
    • Kaplan, H., and Verbin, E. 2005. Sorting signed permutations by reversals, revisited. J. Comput. Syst. Sci. 70, 321-341 (Pubitemid 40391413)
    • (2005) Journal of Computer and System Sciences , vol.70 , Issue.3 , pp. 321-341
    • Kaplan, H.1    Verbin, E.2
  • 10
    • 78649944195 scopus 로고    scopus 로고
    • The problem of chromosome reincorporation in DCJ sorting and halving
    • Kováč, J., Braga, M.D.V., and Stoye, J. 2010. The problem of chromosome reincorporation in DCJ sorting and halving. Lect. Notes Comput. Sci. 6398, 13-24.
    • (2010) Lect. Notes Comput. Sci. , vol.6398 , pp. 13-24
    • Kováč, J.1
  • 11
    • 48249112137 scopus 로고    scopus 로고
    • Genome halving under DCJ revisited
    • Mixtacki, J. 2008. Genome halving under DCJ revisited. Lect. Notes Comput. Sci. 5092, 276-286.
    • (2008) Lect. Notes Comput. Sci. , vol.5092 , pp. 276-286
    • Mixtacki, J.1
  • 12
    • 77950836402 scopus 로고    scopus 로고
    • Sorting signed permutations by inversions in O(n log n) time
    • Swenson, K.M., Rajan, V., Lin, Y., et al. 2010. Sorting signed permutations by inversions in O(n log n) time. J. Comput. Biol. 17, 489-501.
    • (2010) J. Comput. Biol. , vol.17 , pp. 489-501
    • Swenson, K.M.1    Rajan, V.2    Lin, Y.3
  • 13
    • 65849156401 scopus 로고    scopus 로고
    • Multichromosomal median and halving problems under different genomic distances
    • Tannier, E., Zheng, C., and Sankoff, D. 2009. Multichromosomal median and halving problems under different genomic distances. BMC Bioinform. 10, 120.
    • (2009) BMC Bioinform. , vol.10 , pp. 120
    • Tannier, E.1    Zheng, C.2    Sankoff, D.3
  • 14
  • 15
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion and block interchange
    • DOI 10.1093/bioinformatics/bti535
    • Yancopoulos, S., Attie, O., and Friedberg, R. 2005. Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics 21, 3340-3346. (Pubitemid 41222437)
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3340-3346
    • Yancopoulos, S.1    Attie, O.2    Friedberg, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.