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Volumn 6398 LNBI, Issue , 2010, Pages 13-24

The problem of chromosome reincorporation in DCJ sorting and halving

Author keywords

[No Author keywords available]

Indexed keywords

LINEAR-TIME ALGORITHMS; QUADRATIC ALGORITHMS; DOUBLE CUT AND JOINS;

EID: 78649944195     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-16181-0_2     Document Type: Conference Paper
Times cited : (4)

References (15)
  • 1
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion and block interchange
    • DOI 10.1093/bioinformatics/bti535
    • Yancopoulos, S., Attie, O., Friedberg, R.: Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics 21, 3340-3346 (2005) (Pubitemid 41222437)
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3340-3346
    • Yancopoulos, S.1    Attie, O.2    Friedberg, R.3
  • 2
    • 33750264868 scopus 로고    scopus 로고
    • A unifying view of genome rearrangements
    • Bücher, P., Moret, B.M.E. (eds.) WABI 2006. Springer, Heidelberg
    • Bergeron, A., Mixtacki, J., Stoye, J.: A unifying view of genome rearrangements. In: Bücher, P., Moret, B.M.E. (eds.) WABI 2006. LNCS (LNBI), vol. 4175, pp. 163-173. Springer, Heidelberg (2006)
    • (2006) LNCS (LNBI) , vol.4175 , pp. 163-173
    • Bergeron, A.1    Mixtacki, J.2    Stoye, J.3
  • 3
    • 0030285740 scopus 로고    scopus 로고
    • Sorting permutations by block-interchanges
    • Christie, D.A.: Sorting permutations by block-interchanges. Inf. Process. Lett. 60, 165-169 (1996)
    • (1996) Inf. Process. Lett. , vol.60 , pp. 165-169
    • Christie, D.A.1
  • 4
    • 34548256218 scopus 로고    scopus 로고
    • Faster algorithms for sorting by transpositions and sorting by block interchanges
    • Feng, J., Zhu, D.: Faster algorithms for sorting by transpositions and sorting by block interchanges. ACM Transactions on Algorithms 3 (2007)
    • (2007) ACM Transactions on Algorithms , vol.3
    • Feng, J.1    Zhu, D.2
  • 5
    • 77950836402 scopus 로고    scopus 로고
    • Sorting signed permutations by inversions in O(n log n) time
    • Swenson, K.M., Rajan, V., Lin, Y., Moret, B.M.E.: Sorting signed permutations by inversions in O(n log n) time. JCB 17, 489-501 (2010)
    • (2010) JCB , vol.17 , pp. 489-501
    • Swenson, K.M.1    Rajan, V.2    Lin, Y.3    Moret, B.M.E.4
  • 6
    • 65449136686 scopus 로고    scopus 로고
    • Genome halving with double cut and join
    • Warren, R., Sankoff, D.: Genome halving with double cut and join. JBCB 7, 357-371 (2009)
    • (2009) JBCB , vol.7 , pp. 357-371
    • Warren, R.1    Sankoff, D.2
  • 7
    • 48249112137 scopus 로고    scopus 로고
    • Genome halving under DCJ
    • revisited. Hu, X., Wang, J. (eds.) COCOON 2008. Springer, Heidelberg
    • Mixtacki, J.: Genome halving under DCJ revisited. In: Hu, X., Wang, J. (eds.) COCOON 2008. LNCS, vol. 5092, pp. 276-286. Springer, Heidelberg (2008)
    • (2008) LNCS , vol.5092 , pp. 276-286
    • Mixtacki, J.1
  • 8
    • 65849156401 scopus 로고    scopus 로고
    • Multichromosomal median and halving problems under different genomic distances
    • Tannier, E., Zheng, C., Sankoff, D.: Multichromosomal median and halving problems under different genomic distances. BMC Bioinformatics 10 (2009)
    • (2009) BMC Bioinformatics , vol.10
    • Tannier, E.1    Zheng, C.2    Sankoff, D.3
  • 9
    • 0037623969 scopus 로고    scopus 로고
    • The reconstruction of doubled genomes
    • El-Mabrouk, N., Sankoff, D.: The reconstruction of doubled genomes. SIAM J. Comput. 32, 754-792 (2003)
    • (2003) SIAM J. Comput. , vol.32 , pp. 754-792
    • El-Mabrouk, N.1    Sankoff, D.2
  • 10
    • 15344349566 scopus 로고    scopus 로고
    • Sorting signed permutations by reversals
    • revisited.
    • Kaplan, H., Verbin, E.: Sorting signed permutations by reversals, revisited. J. Comput. Syst. Sci. 70(3), 321-341 (2005)
    • (2005) J. Comput. Syst. Sci. , vol.70 , Issue.3 , pp. 321-341
    • Kaplan, H.1    Verbin, E.2
  • 11
    • 49249131069 scopus 로고    scopus 로고
    • Improving the efficiency of sorting by reversals
    • Arabnia, H.R., Valafar, H. (eds.) CSREA Press
    • Han, Y.: Improving the efficiency of sorting by reversals. In: Arabnia, H.R., Valafar, H. (eds.) BIOCOMP, pp. 406-409. CSREA Press (2006)
    • (2006) BIOCOMP , pp. 406-409
    • Han, Y.1
  • 12
    • 0025419380 scopus 로고
    • A data structure useful for finding hamiltonian cycles
    • Chrobak, M., Szymacha, T., Krawczyk, A.: A data structure useful for finding hamiltonian cycles. Theor. Comput. Sci. 71, 419-424 (1990)
    • (1990) Theor. Comput. Sci. , vol.71 , pp. 419-424
    • Chrobak, M.1    Szymacha, T.2    Krawczyk, A.3
  • 14
    • 33746077730 scopus 로고    scopus 로고
    • 3/2√log(n)) algorithm for sorting by reciprocal translocations
    • Lewenstein, M., Valiente, G. (eds.) CPM 2006. Springer, Heidelberg
    • 3/2√log(n)) algorithm for sorting by reciprocal translocations. In: Lewenstein, M., Valiente, G. (eds.) CPM 2006. LNCS, vol. 4009, pp. 258-269. Springer, Heidelberg (2006)
    • (2006) LNCS , vol.4009 , pp. 258-269
    • Ozery-Flato, M.1    Shamir, R.2
  • 15
    • 70349838725 scopus 로고    scopus 로고
    • Computation of perfect dcj rearrangement scenarios with linear and circular chromosomes
    • PMID: 19803733
    • Bérard, S., Chateau, A., Chauve, C., Paul, C., Tannier, E.: Computation of perfect dcj rearrangement scenarios with linear and circular chromosomes. JCB 16, 1287-1309 (2009), PMID: 19803733
    • (2009) JCB , vol.16 , pp. 1287-1309
    • Bérard, S.1    Chateau, A.2    Chauve, C.3    Paul, C.4    Tannier, E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.