Detection of chromosome segments of zebu and taurine origin and their effect on beef production and growth

Journal of Animal Science

Volumn 89, Issue 7, 2011, Pages 2050-2060

  Bolormaa, S ^a,b   Hayes, B J ^b   Hawken, R J ^a,c   Zhang, Y ^a,d   Reverter, A ^a,c   Goddard, M E ^a,b,e  

^a Cooperative Research Centre for Beef Genetic Technologies ^*  (Australia)

^b DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

^c CSIRO   (Australia)

^d Animal Genetics and Breeding Unit (AGBU)   (Australia)

^e UNIVERSITY OF MELBOURNE   (Australia)

Author keywords

Chromosome segment; Genome wide association study; Haplotype; Single nucleotide polymorphism; Taurine; Zebu

Indexed keywords

ALLELE; ANIMAL; ANIMAL DISEASE; ARTICLE; BODY COMPOSITION; CATTLE; CHROMOSOME MAP; GENETICS; GENOME; GROWTH, DEVELOPMENT AND AGING; HAPLOTYPE; METHODOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM; WEIGHT GAIN;

ALLELES; ANIMALS; BODY COMPOSITION; CATTLE; CHROMOSOME MAPPING; GENOME; HAPLOTYPES; POLYMORPHISM, SINGLE NUCLEOTIDE; WEIGHT GAIN;

ANIMALIA; BOS; BOS INDICUS; BOS TAURUS;

EID: 80052554905     PISSN: 00218812     EISSN: 15253163     Source Type: Journal    
DOI: 10.2527/jas.2010-3363     Document Type: Article

References (19)

1. Barendse, W., B. E. Harrison, R. J. Bunch, and M. B. Thomas. 2008. Variation at the Calpain 3 gene is associated with meat tenderness in zebu and composite breeds of cattle. BMC Genet. 9:41.
2. Barendse, W., B. E. Harrison, R. J. Hawken, D. M. Ferguson, J. M. Thompson, M. B. Thomas, and R. J. Bunch. 2007. Epistasis between calpain 1 and its inhibitor calpastatin within breeds of cattle. Genetics 176:2601-2610.
3. Barwick, S. A., M. L. Wolcott, D. J. Johnston, H. M. Burrow, and M. T. Sullivan. 2009. Genetics of heifer performance in 'wet' and 'dry' seasons and their relationships with steer performance in two tropical beef genotypes. Anim. Prod. Sci. 49:367-382.
4. Beja-Pereira, A., D. Caramelli, C. Lalueza-Fox, C. Vernesi, N. Ferrand, A. Casoli, F. Goyache, L. J. Royo, S. Conti, and M. Lari, AMartini, L., A. Ouragh, A. Magid, A. Atash, P. Zsolnai, C. Boscato, K. Triantaphylidis, L. Ploumi, F. Sineo, P. Mallegni, G. Taberlet, L. Erhardt, J. Sampietro, G. Bertranpetit, G. Barbujani, Luikart, and G. Bertorelle. 2006. The origin of European cattle: Evidence from modern and ancient DNA. Proc. Natl. Acad. Sci. USA 103:8113-8118.
5. Bolormaa, S., B. Hayes, K. Savin, R. Hawken, W. Barendse, P. F. Arthur, R. M. Herd, and M. Goddard. 2011. Genome-wide association studies for feedlot and growth traits in cattle. J. Anim. Sci. 89:1684-1697. doi:10.2527/jas.2010-3079.
6. Bradley, D. G., R. Loftus, P. Cunningham, and D. MacHugh. 1998. Genetics and domestic cattle origins. Evol. Anthropol. 6:79-86.
7. Bradley, D., D. MacHugh, P. Gunningham, and R. Loftus. 1996. Mitochondrial diversity and the origins of African and European cattle. Proc. Natl. Acad. Sci. USA 93:5131-5135.
8. Daetwyler, H. D., J. M. Hickey, J. M. Henshall, S. Dominik, B. Gredler, J. H. J. van der Werf, and B. J. Hayes. 2010. Accuracy of estimated genomic breeding values for wool and meat traits in a multi-breed sheep population. Anim. Prod. Sci. 50:1004-1010.
9. Davis, G. P., S. S. Moore, R. D. Drinkwater, W. R. Shorthose, I. D. Loxton, W. Barendse, and D. J. S. Hetzel. 2008. QTL for meat tenderness in the M. longissimus lumborum of cattle. Anim. Genet. 39:40-45.
10. Gilmour, A. R., B. J. Gogel, B. R. Gullis, S. J. Welham, and R. Thompson. 2002. ASReml User Guide Release 1.0. VSN International Ltd., Hemel Hempstead, UK.
11. Hayes, B. J., and M. E. Goddard. 2008. Technical note: Prediction of breeding values using marker-derived relationship matrices. J. Anim. Sci. 86:2089-2092.
12. Hayes, B. J., P. M. Visscher, and M. E. Goddard. 2009. Increased accuracy of artificial selection by using the realized relationship matrix. Genet. Res. (Camb.) 91:47-60.
13. Johnston, D. J., A. Reverter, H. M. Burrow, V. H. Oddy, and D. L. Robinson. 2003. Genetic and phenotypic characterisation of animal, carcass, and meat quality traits from temperate and tropically adapted beef breeds. 1. Animal measures. Aust. J. Agric. Res. 54:107-118.
14. MacHugh, D. E., M. D. Shriver, R. T. Loftus, P. Cunningham, and D. G. Bradley. 1997. Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus). Genetics 146:1071-1086.
15. R Development Core Team. 2005. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org.
16. Robinson, D. L., and V. H. Oddy. 2004. Genetic parameters for feed efficiency, fatness, muscle area and feeding behaviour of feedlot finished beef cattle. Livest. Prod. Sci. 90:255-270. doi:10.1016/j. livprodsci.2004.06.011.
17. Scheet, P., and M. Stephens. 2006. A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet. 78:629-644.
18. Storey, J. D. 2002. A direct approach to false discovery rates. J. R. Stat. Soc., B 64:479-498.
19. White, S. N., E. Casas, T. L. Wheeler, S. D. Shackelford, M. Koohmaraie, D. G. Riley Jr., C. C. Chase, D. D. Johnson, J. W. Keele, and T. P. L. Smith. 2005. A new single nucleotide polymorphism in CAPN1 extends the current tenderness marker test to include cattle of Bos indicus, Bos taurus, and crossbred descent. J. Anim. Sci. 83:2001-2008.