Infrared spectroscopic imaging of renal tumor tissue

Journal of Biomedical Optics

Volumn 16, Issue 9, 2011, Pages

  Šablinskas, Valdas ^a   Urboniene, Vidita ^a   Ceponkus, Justinas ^a   Laurinavicius, Arvydas ^a   Dasevicius, Darius ^a   Jankevičius, Feliksas ^a   Hendrixson, Vaiva ^a   Koch, Edmund ^b   Steiner, Gerald ^b  

^a VILNIUS UNIVERSITY   (Lithuania)

^b DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

infrared spectroscopic imaging; renal tumor; supervised classification

Indexed keywords

BIOCHEMICAL COMPOSITION; FOURIER TRANSFORM INFRARED; FT-IR SPECTROSCOPIC IMAGING; FUZZY K-MEANS; INFRARED SPECTROSCOPIC IMAGING; LINEAR DISCRIMINANT ANALYSIS; NORMAL TISSUE; RENAL TUMORS; SPECTRAL CLASSIFICATION; SPECTROSCOPIC IMAGING; SUPERVISED CLASSIFICATION; TISSUE TYPES;

CLUSTER ANALYSIS; DISCRIMINANT ANALYSIS; FOURIER TRANSFORMS;

TUMORS;

ALGORITHM; ARTICLE; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; COMPUTER ASSISTED DIAGNOSIS; CYTOCHEMISTRY; DISCRIMINANT ANALYSIS; FUZZY LOGIC; HUMAN; IMAGE PROCESSING; INFRARED SPECTROSCOPY; KIDNEY TUMOR; METHODOLOGY; PRINCIPAL COMPONENT ANALYSIS;

ALGORITHMS; CLUSTER ANALYSIS; DISCRIMINANT ANALYSIS; FUZZY LOGIC; HISTOCYTOCHEMISTRY; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; IMAGE PROCESSING, COMPUTER-ASSISTED; KIDNEY NEOPLASMS; PRINCIPAL COMPONENT ANALYSIS; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 80052543514     PISSN: 10833668     EISSN: 15602281     Source Type: Journal    
DOI: 10.1117/1.3622292     Document Type: Article

References (27)

1. C. Paglino, I. Imarisio, and B. Rovereto, Epidemiology, molecular epidemiology, and risk factors for renal cell carcinoma., Oncology Reviews 1, 120-127 (2007). 10.1007/s12156-007-0013-5
2. http://www.krebs-kompass.org/cms/content/view/886/311/.
3. P. Hallscheidt, A. Haferkamp, R. Lopez-Benitez, and M. Palmowsk, Differential diagnosis of renal tumors., Der Radiologe 48, 293-302 (2008). 10.1007/s00117-008-1632-y
4. C. Krafft, G. Steiner, C. Beleites, and R. Salzer, Disease recognition by infrared and Raman spectroscopy., J. Biophotonics 2, 13-28 (2009). 10.1002/jbio.200810024
5. G. Steiner, S. Kchler, A. Hermann, E. Koch, R. Salzer, G. Schackert, and M. Kirsch, Rapid and label-free classification of human glioma cells by infrared spectroscopic imaging., Cytometry 73A, 1158-1164 (2008). 10.1002/cyto.a.20639
6. R. Kong, R. K. Reddy, and R. Bhargava, Characterization of tumor progression in engineered tissue using infrared spectroscopic imaging., Analyst 135, 1569-1578 (2010). 10.1039/C0AN00112K
7. C. Krafft, L. Shapoval, S. B. Sobottka, K. Geiger, G. Schackert, and R. Salzer, Identification of primary tumors of brain metastases by SIMCA classification of IR spectroscopic images., Biochim. Biophys. Acta 1758, 883-891 (2006). 10.1016/j.bbamem.2006.05.001 (Pubitemid 44223431)
8. A. Benard, C. Desmedt, V. Durbecq, G. Rouas, D. Larsimont, C. Sotiriou, and E. Goormaghtigh, Discrimination between healthy and tumor tissues on formalin-fixed paraffin-embedded breast cancer samples using IR imaging., Spectroscopy 24, 67-72 (2010). 10.3233/SPE-2010-0406
9. E. Ly, O. Piot, R. Wolthuis, A. Durlach, P. Bernard, and M. Manfait, Combination of FTIR spectral imaging and chemometrics for tumour detection from paraffin-embedded biopsies., Analyst 133, 197-205 (2008). 10.1039/B715924B (Pubitemid 351172218)
10. A. Stelling, R. Salzer, M. Kirsch, S. B. Sobottka, K. Geiger, E. Koch, G. Schackert, and G. Steiner, Intra-operative optical diagnostics with vibrational spectroscopy., Analytical and Bioanalytical Chem. 400, 2745-2753 (2011). 10.1007/s00216-011-5022-3
11. K. Bensalah, J. Fleureau, D. Rolland, O. Lavastre, N. Rioux-Leclercq, F. Guille, J. J. Patard, and L. Senhadji, Raman Spectroscopy: A Novel Experimental Approach to Evaluating Renal Tumours., Eur. Urol. 58, 602-608 (2010). 10.1016/j.eururo.2010.06.002
12. S. Modershai, R. K. Sahu, and Z. Hammody, Possible common biomarkers from FTIR microspectroscopy of cervical cancer and melanoma., J. Microsc. 215, 86-91 (2004). 10.1111/j.0022-2720.2004.01356.x (Pubitemid 38845129)
13. K. Ali, Y. Lu, C. Christensen, T. May, C. Hyett, R. Griebel, D. Fourney, K. Meguro, L. Resch, and R. K. Sharma, Fourier transform infrared spectromicroscopy and hierarchical cluster analysis of human meningiomas., Int. J. Mol. Med. 21, 297-301 (2008). (Pubitemid 351330480)
14. A. Beljebbar, S. Dukic, N. Amharref, and M. Manfait, Screening of biochemicalhistological changes associated to C6 glioma tumor development by FTIRPCA imaging., Analyst 135, 1090-1097 (2010). 10.1039/B922184K
15. C. Krafft, L. Shapoval, S. B. Sobottka, G. Schackert, and R. Salzer, Identification of primary tumors of brain metastases by infrared spectroscopic imaging and linear discriminant analysis., Technol. Cancer Res. Treat. 5, 291-298 (2006). (Pubitemid 43946263)
16. M. Sattlecker, C. Bessant, J. Smith, and N. Stone, Investigation of support vector machines and Raman spectroscopy for lymph node diagnostics., Analyst 135, 895-901 (2010). 10.1039/B920229C
17. R. Tibshirani, G. Walther, and T. Hastie, Estimating the Number of Clusters in a Dataset via the Gap Statistic., J. Royal Statistical Soc. B63, 411-423 (2001). 10.1111/1467-9868.00293
18. G. Steiner, A. Shaw, L.-P. Choo-Smith, M. H. Abuid, G. Schackert, S. Sobottka, W. Steller, R. Salzer, and H. H. Mantsch, Distinguishing and grading human gliomas by IR spectroscopy., Biospectroscopy Biopolymers 72, 464-471 (2003). 10.1002/bip.10487 (Pubitemid 37413224)
19. G. I. Dovbeshko, V. I. Chegel, N. Y. Gridina, O. P. Repnytska, Y. M. Shirshov, V. P. Tryndiak, I. M. Todor, and G. I. Solyanik, Surface enhanced IR absorption of nucleic acids from tumor cells: FTIR reflectance study. Biopolymer 67, 470-486 (2002). 10.1002/bip.10165
20. G. I. Dovbeshko, N. Y. Gridina, E. B. Kruglova, and O. P. Pashchuk, FTIR spectroscopy studies of nucleic acid damage., Talanta 53, 233-246 (1977). 10.1016/S0039-9140(00)00462-8
21. M. Jackson and H. H. Mantsch, Pathology by infrared and Raman spectroscopy., in Handbook of Vibrational Spectroscopy, Wiley (2006). 10.1002/0470027320.s8101
22. V. Sablinskas, J. Ceponkus, M. Pucetaite, S. Strazdaite, V. Urboniene, F. Jankevicius, G. Steiner and E. Koch, Infrared spectroscopic imaging of kidney tumor tissue., Proc. SPIE 7 902, 790221 (2011). 10.1117/12.875258
23. R. Salzer, G. Steiner, H. H. Mantsch, J. Mansfield, and N. E. Lewis, Infrared and Raman imaging of biological and biomimetic samples., Fresenius' J. Anal. Chem. 366, 712-726 (2000). 10.1007/s002160051565
24. B. R. Wood, M A. Quinn, F. R. Burden, and D. McNaughton, An investigation into FT-IR spectroscopy as a bio-diagnostic tool for cervical cancer., Biospectroscopy 2, 143-153 (1996). 10.1002/(SICI)1520-6343(1996)2:3143::AID- BSPY13.0.CO;2-9 (Pubitemid 126790026)
25. Z. Wang, T. Jiang, J. Li, G. Proctor, J. L. McManaman, S. Lucia, S. Chua, and M. Levi, Regulation of renal lipid metabolism, lipid accumulation, and glomerulosclerosis in FVBdbdb mice with type 2 diabetes., Diabetes 54, 2328-2335 (2005). 10.2337/diabetes.54.8.2328 (Pubitemid 41134259)
26. H. A. Drabkin and R. M. Gemmill, Obesity, cholesterol and clear-cell renal cell carcinoma (RCC)., Adv. Cancer Res. 107, 39-56 (2010). 10.1016/S0065-230X(10)07002-8
27. X. Zhang, Y. Xu, Y. Zhang, L. Wang, C. Hou, X. Zhou, X. Ling, and Z. Xu, Intraoperative detection of thyroid carcinoma by fourier transform infrared spectrometry., J. Surg. Res. (2011) (in press). 10.1016/j.physletb.2003.10.071