Genome sequence of a porcine extraintestinal pathogenic Escherichia coli strain

Journal of Bacteriology

Volumn 193, Issue 18, 2011, Pages 5038-

  Tan, Chen ^a   Xu, Zhuofei ^a   Zheng, Huajun ^b   Liu, Wugang ^a   Tang, Xibiao ^a   Shou, Jin ^a   Wu, Bin ^a   Wang, Shengyue ^b   Zhao, Guo Ping ^b   Chen, Huanchun ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b CHINESE NATIONAL HUMAN GENOME CENTER AT SHANGHAI   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIAL VIRULENCE; COMMENSAL ESCHERICHIA COLI; GENE SEQUENCE; NONHUMAN; NOTE; PATHOGENIC ESCHERICHIA COLI; PRIORITY JOURNAL; SWINE;

ANIMALS; DNA, BACTERIAL; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; GENOME, BACTERIAL; MENINGITIS, BACTERIAL; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA; SWINE; SWINE DISEASES;

ANIMALIA; ESCHERICHIA COLI; SUIDAE; SUS;

EID: 80052517376     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.05551-11     Document Type: Note

References (9)

1. Blattner, F. R., et al. 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-1462.
2. Johnson, R., and L. Stell. 2000. Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise. J. Infect. Dis. 181:261-272.
3. Johnson, R., A. Kuskowski, T. O'Bryan, and N. Maslow. 2002. Epidemiological correlates of virulence genotype and phylogenetic background among Escherichia coli blood isolates from adults with diverse-source bacteremia. J. Infect. Dis. 185:1439-1447.
4. Orskov, F., and I. Orskov. 1992. Escherichia coli serotyping and disease in man and animals. Can. J. Microbiol. 38:699-704.
5. Smith, L., M. Fratamico, and W. Gunther. 2007. Extraintestinal pathogenic Escherichia coli. Foodborne Pathogens Dis. 4:134-163.
6. Tang, X., et al. 2011. Antimicrobial resistances of extraintestinal pathogenic Escherichia coli isolates from swine in China. Microb. Pathog. 50:207-212.
7. Tatusov, R. L., M. Y. Galperin, D. A. Natale, and E. V. Koonin. 2000. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28:33-36.
8. Welch, R. A., et al. 2002. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 99:17020-17024.
9. Zerbino, D. R., and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.