Proteome of human perilymph

Journal of Proteome Research

Volumn 10, Issue 9, 2011, Pages 3845-3851

  Lysaght, Andrew C ^a,b   Kao, Shyan Yuan ^b   Paulo, Joao A ^c,d   Merchant, Saumil N ^a,b,e   Steen, Hanno ^c   Stankovic, Konstantina M ^a,b,e  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b MASSACHUSETTS EYE AND EAR INFIRMARY   (United States)

^c BOSTON CHILDREN S HOSPITAL   (United States)

^d BRIGHAM AND WOMEN S HOSPITAL   (United States)

^e HARVARD MEDICAL SCHOOL   (United States)

Author keywords

human; mass spectrometry; perilymph; proteomics; vestibular schwannoma

Indexed keywords

PROTEIN; PROTEOME;

ACOUSTIC NEURINOMA; ARTICLE; CEREBROSPINAL FLUID; HUMAN; HUMAN VERSUS ANIMAL COMPARISON; IDIOPATHIC DISEASE; IMPLANTATION; LIQUID CHROMATOGRAPHY; MOUSE; NONHUMAN; PERCEPTION DEAFNESS; PERILYMPH; PLASMA; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEOMICS; TANDEM MASS SPECTROMETRY;

BIOLOGICAL MARKERS; CEREBROSPINAL FLUID; CHROMATOGRAPHY, LIQUID; COCHLEAR IMPLANTATION; COHORT STUDIES; HUMANS; NEUROMA, ACOUSTIC; PEPTIDE FRAGMENTS; PERILYMPH; PLASMA; PROTEOME; PROTEOMICS; TANDEM MASS SPECTROMETRY;

MURINAE;

EID: 80052509747     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr200346q     Document Type: Article

References (36)

1. Halpin, C.; Rauch, S. D. Clinical implications of a damaged cochlea: pure tone thresholds vs information-carrying capacity Otolaryngol. Head Neck Surg. 2009, 140, 473-476
2. Ahmmed, A.; Brockbank, C.; Adshead, J. Cochlear microphonics in sensorineural hearing loss: lesson from newborn hearing screening Int. J. Pediatr. Otorhinolaryngol. 2008, 72, 1281-1285
3. Wei, D.; Yamoah, E. N. Regeneration of the mammalian inner ear sensory epithelium Curr. Opin. Otolaryngol. Head Neck Surg. 2009, 17, 373-380
4. Silverstein, H. A rapid protein test for acoustic neurinoma Arch. Otolaryngol 1972, 95, 202-204
5. Silverstein, H. Labyrinthine tap as a diagnostic test for acoustic neurinoma Otolaryngol. Clin. North Am. 1973, 6, 229-244
6. Arrer, E.; Oberascher, G.; Gibitz, H. J. A map of cochlear perilymph protein based on high-resolution two-dimensional electrophoresis Eur. Arch. Otorhinolaryngol. 1990, 247, 271-273 (Pubitemid 20232747)
7. Paugh, D. R.; Telian, S. A.; Disher, M. J. Identification of perilymph proteins by two-dimensional gel electrophoresis Otolaryngol. Head Neck Surg. 1991, 104, 517-525
8. Thalmann, I.; Comegys, T. H.; Liu, S. Z.; Ito, Z.; Thalmann, R. Protein profiles of perilymph and endolymph of the guinea pig Hear. Res. 1992, 63, 37-42
9. Thalmann, I. Protein profile of human perilymph: in search of markers for the diagnosis of perilymph fistula and other inner ear disease Otolaryngol. Head Neck Surg. 1994, 111, 273-280 (Pubitemid 24299940)
10. Nadol, J. B., Jr.; Diamond, P. F.; Thornton, A. R. Correlation of hearing loss and radiologic dimensions of vestibular schwannomas (acoustic Neuromas) Am. J. Otol. 1996, 17, 312-316 (Pubitemid 26171776)
11. Stankovic, K. M. Genetic determinants of hearing loss associated with vestibular schwannomas Otol. Neurotol. 2009, 30, 661-667
12. Neubauer, G.; Mann, M. Mapping of phosphorylation sites of gel-isolated proteins by nanoelectrospray tandem mass spectrometry: potentials and limitations Anal. Chem. 1999, 71, 235-242 (Pubitemid 29029531)
13. Steen, H.; Kuster, B.; Fernandez, M.; Pandey, A.; Mann, M. Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode Anal. Chem. 2001, 73, 1440-1448 (Pubitemid 32896198)
14. Kersey, P. J. The International Protein Index: an integrated database for proteomics experiments Proteomics 2004, 4, 1985-1988 (Pubitemid 38880363)
15. Shilov, I. V. The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra Mol. Cell. Proteomics 2007, 6, 1638-1655 (Pubitemid 47506173)
16. Choi, H.; Fermin, D.; Nesvizhskii, A. I. Significance analysis of spectral count data in label-free shotgun proteomics Mol. Cell. Proteomics 2008, 7, 2373-2385
17. Zhang, J. Proteomics of human cerebrospinal fluid-the good, the bad, and the ugly Proteomics-Clin. Appl. 2007, 1, 805-819
18. Zhang, Y. MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes Nucleic Acids Res. 2007, 35, D771-779
19. Zougman, A. Integrated analysis of the cerebrospinal fluid peptidome and proteome J. Proteome Res. 2008, 7, 386-399 (Pubitemid 351171153)
20. Anderson, N. L.; Anderson, N. G. The human plasma proteome: history, character, and diagnostic prospects Mol. Cell. Proteomics 2002, 1, 845-867
21. Anderson, N. L. The human plasma proteome: a nonredundant list developed by combination of four separate sources Mol. Cell. Proteomics 2004, 3, 311-326
22. Swan, E. E. Proteomics analysis of perilymph and cerebrospinal fluid in mouse Laryngoscope 2009, 119, 953-958
23. Waterhouse, R. M.; Zdobnov, E. M.; Tegenfeldt, F.; Li, J.; Kriventseva, E. V. OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011 Nucleic Acids Res. 2011, 39, D283-288
24. Drescher, D. G. Purification of a carbonic anhydrase from the inner ear of the guinea pig Proc. Natl. Acad. Sci. U.S.A. 1977, 74, 892-896 (Pubitemid 8068709)
25. Eckermeier, L.; Pirsig, W.; Mueller, D. Histopathology of 30 non-operated acoustic schwannomas Arch. Otorhinolaryngol. 1979, 222, 1-9 (Pubitemid 9219730)
26. Fisher, L. M.; Doherty, J. K.; Lev, M. H.; Slattery, W. H. Concordance of bilateral vestibular schwannoma growth and hearing changes in neurofibromatosis 2: neurofibromatosis 2 natural history consortium Otol. Neurotol. 2009, 30, 835-841
27. Suga, F.; Lindsay, J. R. Inner ear degeneration in acoustic neurinoma Ann. Otol. Rhinol. Laryngol. 1976, 85, 343-358
28. Mori, J. Nicotinamide adenine dinucleotide phosphate-dependent cytosolic T(3) binding protein as a regulator for T(3)-mediated transactivation Endocrinology 2002, 143, 1538-1544 (Pubitemid 34274385)
29. Usami, S. The localization of proteins encoded by CRYM, KIAA1199, UBA52, COL9A3, and COL9A1, genes highly expressed in the cochlea Neuroscience 2008, 154, 22-28
30. Abe, S. Identification of CRYM as a candidate responsible for nonsyndromic deafness, through cDNA microarray analysis of human cochlear and vestibular tissues Am. J. Hum. Genet. 2003, 72, 73-82 (Pubitemid 36056843)
31. Oshima, A. CRYM mutations cause deafness through thyroid hormone binding properties in the fibrocytes of the cochlea J. Med. Genet. 2006, 43, e25
32. Farquhar, M. G.; Saito, A.; Kerjaschki, D.; Orlando, R. A. The Heymann nephritis antigenic complex: megalin (gp330) and RAP J. Am. Soc. Nephrol. 1995, 6, 35-47
33. Kerjaschki, D.; Farquhar, M. G. Immunocytochemical localization of the Heymann nephritis antigen (GP330) in glomerular epithelial cells of normal Lewis rats J. Exp. Med. 1983, 157, 667-686 (Pubitemid 13145068)
34. Chatelet, F.; Brianti, E.; Ronco, P.; Roland, J.; Verroust, P. Ultrastructural localization by monoclonal antibodies of brush border antigens expressed by glomeruli. II. Extrarenal distribution Am. J. Pathol. 1986, 122, 512-519 (Pubitemid 16017672)
35. Raychowdhury, R.; Niles, J. L.; McCluskey, R. T.; Smith, J. A. Autoimmune target in Heymann nephritis is a glycoprotein with homology to the LDL receptor Science 1989, 244, 1163-1165 (Pubitemid 19170485)
36. Kantarci, S. Mutations in LRP2, which encodes the multiligand receptor megalin, cause Donnai-Barrow and facio-oculo-acoustico-renal syndromes Nat. Genet. 2007, 39, 957-959 (Pubitemid 47185171)