메뉴 건너뛰기




Volumn 106, Issue 1, 2011, Pages 19-27

Automaton models of computational genetic regulatory networks with combinatorial gene-protein interactions

Author keywords

Automata; Basic interactions; Combinatorial interactions; Composite interactions; Formal languages; Gene networks; Inducible events

Indexed keywords

CHEMICAL COMPOSITION; COMPUTER SIMULATION; GENETIC ANALYSIS; HERB; MORPHOGENESIS; NUMERICAL MODEL; PROTEIN;

EID: 80052396752     PISSN: 03032647     EISSN: 18728324     Source Type: Journal    
DOI: 10.1016/j.biosystems.2011.06.006     Document Type: Article
Times cited : (7)

References (30)
  • 2
    • 0022769976 scopus 로고    scopus 로고
    • Graph-based algorithms for boolean function manipulation
    • Bryant R.E. Graph-based algorithms for boolean function manipulation. IEEE Transactions on Computers 1996, 12(8):677-691.
    • (1996) IEEE Transactions on Computers , vol.12 , Issue.8 , pp. 677-691
    • Bryant, R.E.1
  • 4
    • 0347284260 scopus 로고    scopus 로고
    • A computational model of a class of gene networks with positive and negative controls
    • Chen P.C.Y. A computational model of a class of gene networks with positive and negative controls. BioSystems 2004, 73:13-24.
    • (2004) BioSystems , vol.73 , pp. 13-24
    • Chen, P.C.Y.1
  • 6
    • 33845357108 scopus 로고    scopus 로고
    • A discrete-event approach to transcription control with dynamic event-controllability
    • November (9)
    • Chen P.C.Y. A discrete-event approach to transcription control with dynamic event-controllability. Journal of Computational Biology 2006, 13(November (9)):1532-1545.
    • (2006) Journal of Computational Biology , vol.13 , pp. 1532-1545
    • Chen, P.C.Y.1
  • 7
    • 85194538535 scopus 로고    scopus 로고
    • Chen, P.C.Y., Weng, Y.L. http://guppy.mpe.nus.edu.sg/peter_chen/papers/ChenWeng_Data.html.
    • Chen, P.C.Y.1    Weng, Y.L.2
  • 9
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and simulation of genetic regulatory systems: a literature review
    • De Jong H. Modeling and simulation of genetic regulatory systems: a literature review. Journal of Computational Biology 2002, 9(1):67-103.
    • (2002) Journal of Computational Biology , vol.9 , Issue.1 , pp. 67-103
    • De Jong, H.1
  • 10
    • 0013823048 scopus 로고
    • Oscillatory behaviour in enzymatic control process
    • Goodwin B. Oscillatory behaviour in enzymatic control process. Advances in Enzyme Regulation 1965, 3:425-438.
    • (1965) Advances in Enzyme Regulation , vol.3 , pp. 425-438
    • Goodwin, B.1
  • 12
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • Jacob F., Monod J. Genetic regulatory mechanisms in the synthesis of proteins. Journal of Molecular Biology 1960, 3:318-356.
    • (1960) Journal of Molecular Biology , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 13
    • 34248649758 scopus 로고    scopus 로고
    • Understanding genetic regulatory networks
    • Kauffman S. Understanding genetic regulatory networks. International Journal of Astrobiology 2003, 2(2):131-139.
    • (2003) International Journal of Astrobiology , vol.2 , Issue.2 , pp. 131-139
    • Kauffman, S.1
  • 16
    • 0034175821 scopus 로고    scopus 로고
    • Towards a circuit engineering discipline
    • McAdams H.H., Arkin A. Towards a circuit engineering discipline. Current Biology 2000, 10(8):R318-R320.
    • (2000) Current Biology , vol.10 , Issue.8
    • McAdams, H.H.1    Arkin, A.2
  • 17
    • 0029028963 scopus 로고
    • Circuit simulation of genetic networks
    • McAdams H.H., Shapiro L. Circuit simulation of genetic networks. Science 1995, 269:650-656.
    • (1995) Science , vol.269 , pp. 650-656
    • McAdams, H.H.1    Shapiro, L.2
  • 18
    • 0032879544 scopus 로고    scopus 로고
    • Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis
    • Mendoza L., Thieffry D., Alvarez-Buylla E.R. Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis. Bioinformatics 1999, 15(7/8):593-606.
    • (1999) Bioinformatics , vol.15 , Issue.7-8 , pp. 593-606
    • Mendoza, L.1    Thieffry, D.2    Alvarez-Buylla, E.R.3
  • 20
    • 0034759057 scopus 로고    scopus 로고
    • Re-engineering adenovirus regulatory pathways to enhance oncolytic specificity and efficacy
    • Ramachandra M., Rahman A., Zou A., et al. Re-engineering adenovirus regulatory pathways to enhance oncolytic specificity and efficacy. Nature Biotechnology 2001, 19:1035-1041.
    • (2001) Nature Biotechnology , vol.19 , pp. 1035-1041
    • Ramachandra, M.1    Rahman, A.2    Zou, A.3
  • 22
    • 0033782304 scopus 로고    scopus 로고
    • Modeling transcriptional control in gene networks: methods, recent results, and future directions
    • Smolen P., Baxter D.A., Byrne J.H. Modeling transcriptional control in gene networks: methods, recent results, and future directions. Bulletin of Mathematical Biology 2000, 62:247-292.
    • (2000) Bulletin of Mathematical Biology , vol.62 , pp. 247-292
    • Smolen, P.1    Baxter, D.A.2    Byrne, J.H.3
  • 23
    • 16544392954 scopus 로고    scopus 로고
    • Human genome: end of the beginning
    • O
    • Stein L.D. Human genome: end of the beginning. Nature October 2004, 431:915-916.
    • (2004) Nature , vol.431 , pp. 915-916
    • Stein, L.D.1
  • 24
    • 0029267492 scopus 로고
    • Dynamical behavior of biological regulatory networks-II. Immunity control in bacteriophage lambda
    • Thieffry D., Thomas R. Dynamical behavior of biological regulatory networks-II. Immunity control in bacteriophage lambda. Bulletin of Mathematical Biology 1995, 57(2):277-297.
    • (1995) Bulletin of Mathematical Biology , vol.57 , Issue.2 , pp. 277-297
    • Thieffry, D.1    Thomas, R.2
  • 26
    • 0007712725 scopus 로고    scopus 로고
    • Multistationarity, the basis of cell differentiation and memory. I. Structural conditions of multistationarity and other nontrivial behavior
    • M
    • Thomas R., Kauffman M. Multistationarity, the basis of cell differentiation and memory. I. Structural conditions of multistationarity and other nontrivial behavior. Chaos March 2001, 11(1):170-179.
    • (2001) Chaos , vol.11 , Issue.1 , pp. 170-179
    • Thomas, R.1    Kauffman, M.2
  • 27
    • 0035582202 scopus 로고    scopus 로고
    • Multistationarity, the basis of cell differentiation and memory. II. Logical analysis of regulatory networks in terms of feedback circuits
    • M
    • Thomas R., Kauffman M. Multistationarity, the basis of cell differentiation and memory. II. Logical analysis of regulatory networks in terms of feedback circuits. Chaos March 2001, 11(1):180-195.
    • (2001) Chaos , vol.11 , Issue.1 , pp. 180-195
    • Thomas, R.1    Kauffman, M.2
  • 28
    • 0029267491 scopus 로고
    • Dynamical behavior of biological regulatory networks-I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state
    • Thomas R., Thieffry D., Kauffman M. Dynamical behavior of biological regulatory networks-I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state. Bulletin of Mathematical Biology 1995, 57(2):247-276.
    • (1995) Bulletin of Mathematical Biology , vol.57 , Issue.2 , pp. 247-276
    • Thomas, R.1    Thieffry, D.2    Kauffman, M.3
  • 29
    • 85194577747 scopus 로고    scopus 로고
    • Department of Electrical and Computer Engineering, University of Toronto, Canada, (last accessed: June 1, 2011)
    • Wonham, W.M., 2011. Department of Electrical and Computer Engineering, University of Toronto, Canada, (last accessed: June 1, 2011). http://www.control.utoronto.ca/people/profs/wonham/wonham.html.
    • (2011)
    • Wonham, W.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.