In vitro selection and characterization of DNA aptamers recognizing chloramphenicol

Journal of Biotechnology

Volumn 155, Issue 4, 2011, Pages 361-369

  Mehta, Jaytry ^a,b   Van Dorst, Bieke ^a,b   Rouah Martin, Elsa ^a,b   Herrebout, Wouter ^a   Scippo, Marie Louise ^c   Blust, Ronny ^a   Robbens, Johan ^a,b  

^a UNIVERSITY OF ANTWERP   (Belgium)

^b INSTITUTE FOR AGRICULTURAL AND FISHERIES RESEARCH ILVO   (Belgium)

^c UNIVERSITY OF LIÈGE   (Belgium)

Author keywords

Antibiotics; Chloramphenicol; Detection; DNA aptamers; Molecular recognition

Indexed keywords

APTAMERS; BINDING AFFINITIES; CHLORAMPHENICOL; DISSOCIATION CONSTANT; DNA APTAMERS; HIGH SELECTIVITY; IN-VITRO; MICROMOLAR RANGE; RECOGNITION ELEMENT; SENSITIVE METHOD; SEQUENCE HOMOLOGY; SIDE EFFECT; STRUCTURAL SIMILARITY;

ANTIBIOTICS; BINDING ENERGY; BIOSENSORS; CAMS; DISSOCIATION; DNA; MOLECULAR BIOLOGY; MOLECULAR RECOGNITION; RNA;

DNA SEQUENCES;

APTAMER; CHLORAMPHENICOL; DNA; NUCLEOTIDE;

ARTICLE; BINDING AFFINITY; BIOSENSOR; COVALENT BOND; DISSOCIATION CONSTANT; DNA BINDING; DNA SEQUENCE; IN VITRO SELECTION; MOLECULAR RECOGNITION; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; SEQUENCE HOMOLOGY;

APTAMERS, NUCLEOTIDE; BASE SEQUENCE; BIOSENSING TECHNIQUES; CHLORAMPHENICOL; DNA; HUMANS; KINETICS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION;

ANIMALIA;

EID: 80052394585     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2011.06.043     Document Type: Article

References (34)

1. Bagalkot V., Farokhzad O.C., Langer R., Jon S. Aptamer-dox conjugates as novel platform for targeted drug delivery and imaging. Nanomedicine 2007, 3:352.
2. Boxall A.B.A. Veterinary medicines and the environment. Comparative and Veterinary Pharmacology 2010, 291-314. Springer, Berlin/Heidelberg. F. Cunningham, J. Elliott, P. Lees (Eds.).
3. Burge S., Parkinson G.N., Hazel P., Todd A.K., Neidle S. Quadruplex DNA: sequence, topology and structure. Nucleic Acids Res. 2006, 34:5402-5415.
4. Burke D.H., Hoffman D.C., Brown A., Hansen M., Pardi A., Gold L. Rna aptamers to the peptidyl transferase inhibitor chloramphenicol. Chem. Biol. 1997, 4:833-843.
5. Burton C.W., DeVault G.A., Clement J.C., Williams D.M. Aplastic anemia associated with parenteral chloramphenicol: review of 10 cases, including the second case of possible increased risk with cimetidine. Rev. Infect. Dis. 1988, 10:1048-1051.
6. Cerchia L., de Franciscis V. Targeting cancer cells with nucleic acid aptamers. Trends Biotechnol. 2010, 28:517-525.
7. Davis J.T., Spada G.P. Supramolecular architectures generated by self-assembly of guanosine derivatives. Chem. Soc. Rev. 2007, 36:296-313.
8. Ellington A.D., Szostak J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 1990, 346:818-822.
9. Fang L., Lü Z., Wei H., Wang E. A electrochemiluminescence aptasensor for detection of thrombin incorporating the capture aptamer labeled with gold nanoparticles immobilized onto the thio-silanized ito electrode. Anal. Chim. Acta 2008, 628:80-86.
10. Fodey T., Murilla G., Cannavan A., Elliott C. Characterisation of antibodies to chloramphenicol, produced in different species by enzyme-linked immunosorbent assay and biosensor technologies. Anal. Chim. Acta 2007, 592:51-57.
11. Gantverg A., Shishani I., Hoffman M. Determination of chloramphenicol in animal tissues and urine: Liquid chromatography-tandem mass spectrometry versus gas chromatography-mass spectrometry. Anal. Chim. Acta 2003, 483:125-135.
12. Girardi C., Odore R. Pharmacological treatments and risks for the food chain. Vet. Res. Commun. 2008, 32:11-18.
13. Guschlbauer W., Chantot J.F., Thiele D. 4-Stranded nucleic-acid structures 25 years later - from guanosine gels to telomer DNA. J. Biomol. Struct. Dyn. 1990, 8:491-511.
14. Harvey I., Garneau P., Pelletier J. Inhibition of translation by RNA-small molecule interactions. RNA 2002, 8:452-463.
15. Jardetzky O. Studies on the mechanism of action of chloramphenicol. J. Biol. Chem. 1963, 238:2498-2508.
16. Joeng C.B., Niazi J.H., Lee S.J., Gu M.B. Ssdna aptamers that recognize diclofenac and 2-anilinophenylacetic acid. Bioorg. Med. Chem. 2009, 17:5380-5387.
17. Mann D., Reinemann C., Stoltenburg R., Strehlitz B. In vitro selection of DNA aptamers binding ethanolamine. Biochem. Biophys. Res. Commun. 2005, 338:1928-1934.
18. Mendonsa S.D., Bowser M.T. In vitro selection of high-affinity DNA ligands for human ige using capillary electrophoresis. Anal. Chem. 2004, 76:5387-5392.
19. Mondal S., Hu J.L. Structural characterization and mass transfer properties of dense segmented polyurethane membrane: Influence of hard segment and soft segment crystal melting temperature. Polym. Eng. Sci. 2008, 48:233-239.
20. Mulhall A., Delouvois J., Hurley R. Chloramphenicol toxicity in neonates - its incidence and prevention. Br. Med. J. 1983, 287:1424-1427.
21. Niazi J.H., Lee S.J., Gu M.B. Single-stranded DNA aptamers specific for antibiotics tetracyclines. Bioorg. Med. Chem. 2008, 16:7245-7253.
22. Niazi J.H., Lee S.J., Kim Y.S., Gu M.B. Ssdna aptamers that selectively bind oxytetracycline. Bioorg. Med. Chem. 2008, 16:1254-1261.
23. Prescott J.F. Antimicrobial use in food and companion animals. Anim. Health Res. Rev. 2008, 9:127-133.
24. Rodriguez M.C., Kawde A.N., Wang J. Aptamer biosensor for label-free impedance spectroscopy detection of proteins based on recognition-induced switching of the surface charge. Chem. Commun. 2005, 4267-4269.
25. Salas T.R., Petruseva I., Lavrik O., Bourdoncle A., Mergny J.L., Favre A., Saintome C. Human replication protein a unfolds telomeric g-quadruplexes. Nucleic Acids Res. 2006, 34:4857-4865.
26. Smith A.G., Dovey G.J., Cartwright R.A. Topical chloramphenicol and the risk of acute leukaemia in adults. Pharmacoepidemiol. Drug Saf. 2000, 9:215-219.
27. Smith F.F.W.J. Quadruplex structure of oxytricha telomeric DNA oligonucleotides. Nature 1992, 356:164-168.
28. Song S.P., Wang L.H., Li J., Zhao J.L., Fan C.H. Aptamer-based biosensors. Trends Anal. Chem. 2008, 27:108-117.
29. Stoltenburg R., Reinemann C., Strehlitz B. Flumag-selex as an advantageous method for DNA aptamer selection. Anal. Bioanal. Chem. 2005, 383:83-91.
30. Tuerk C., Gold L. Systematic evolution of ligands by exponential enrichment - RNA ligands to bacteriophage-t4 DNA-polymerase. Science 1990, 249:505-510.
31. Van Dorst B., Mehta J., Bekaert K., Rouah-Martin E., De Coen W., Dubruel P., Blust R., Robbens J. Recent advances in recognition elements of food and environmental biosensors: a review. Biosens. Bioelectron. 2010, 26:1178-1194.
32. Winckler C., Grafe A. Use of veterinary drugs in intensive animal production. J. Soils Sediments 2001, 1:66-70.
33. Wochner A., Menger M., Orgel D., Cech B., Rimmele M., Erdmann V.A., Glökler J. A DNA aptamer with high affinity and specificity for therapeutic anthracyclines. Anal. Biochem. 2008, 373:34-42.
34. Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003, 31:3406-3415.