Escherichia coli nucleoside diphosphate kinase mutants depend on translesion DNA synthesis to prevent mutagenesis

Journal of Bacteriology

Volumn 193, Issue 17, 2011, Pages 4531-4533

  Nordman, Jared ^a,b   Wright, Andrew ^a  

^a TUFTS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b WHITEHEAD INSTITUTE FOR BIOMEDICAL RESEARCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOSIDE DIPHOSPHATE KINASE;

ARTICLE; DNA SYNTHESIS; ESCHERICHIA COLI; MUTAGENESIS; PRIORITY JOURNAL;

BETA-GALACTOSIDASE; DNA DAMAGE; DNA REPLICATION; DNA, BACTERIAL; DNA-DIRECTED DNA POLYMERASE; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; MUTAGENESIS; MUTATION; NUCLEOSIDE-DIPHOSPHATE KINASE; PLASMIDS; URACIL;

ESCHERICHIA COLI;

EID: 80052324610     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.05393-11     Document Type: Article

References (28)

1. Broughton, B. C., et al. 2002. Molecular analysis of mutations in DNA polymerase eta in xeroderma pigmentosum-variant patients. Proc. Natl. Acad. Sci. U. S. A. 99:815-820.
2. Cox, M. M., et al. 2000. The importance of repairing stalled replication forks. Nature 404:37-41.
3. Elledge, S. J., and G. C. Walker. 1983. Proteins required for UV light and chemical mutagenesis. Identification of the products of the umuC locus of Escherichia coli. J. Mol. Biol. 164:175-192.
4. Elledge, S. J., and G. C. Walker. 1983. The muc genes of pKM101 are induced by DNA damage. J. Bacteriol. 155:1306-1315.
5. Friedberg, E. C., G. C. Walker, and W. Siede. 2006. DNA repair and mutagenesis, 2nd ed. ASM Press, Washington, DC.
6. Glassner, B. J., L. M. Posnick, and L. D. Samson. 1998. The influence of DNA glycosylases on spontaneous mutation. Mutat. Res. 400:33-44.
7. Godoy, V. G., et al. 2007. UmuD and RecA directly modulate the mutagenic potential of the Y family DNA polymerase DinB. Mol. Cell 28:1058-1070.
8. Godoy, V. G., D. F. Jarosz, F. L. Walker, L. A. Simmons, and G. C. Walker. 2006. Y-family DNA polymerases respond to DNA damage-independent inhibition of replication fork progression. EMBO J. 25:868-879.
9. Goswami, S. C., J. H. Yoon, B. M. Abramczyk, G. P. Pfeifer, and E. H. Postel. 2006. Molecular and functional interactions between Escherichia coli nucleoside-diphosphate kinase and the uracil-DNA glycosylase Ung. J. Biol. Chem. 281:32131-32139.
10. Jarosz, D. F., V. G. Godoy, J. C. Delaney, J. M. Essigmann, and G. C. Walker. 2006. A single amino acid governs enhanced activity of DinB DNA polymerases on damaged templates. Nature 439:225-228.
11. Jiang, Q., K. Karata, R. Woodgate, M. M. Cox, and M. F. Goodman. 2009. The active form of DNA polymerase V is UmuD′(2)C-RecA-ATP. Nature 460:359-363.
12. Kenyon, C. J., and G. C. Walker. 1980. DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 77:2819-2823.
13. Kim, S. R., K. Matsui, M. Yamada, P. Gruz, and T. Nohmi. 2001. Roles of chromosomal and episomal dinB genes encoding DNA pol IV in targeted and untargeted mutagenesis in Escherichia coli. Mol. Genet. Genomics 266: 207-215.
14. Kornberg, A., and T. A. Baker. 1992. DNA replication, 2nd ed. W. H. Freeman, New York, NY.
15. Lascu, I., and P. Gonin. 2000. The catalytic mechanism of nucleoside diphosphate kinases. J. Bioenerg. Biomembr. 32:237-246.
16. Lu, Q., X. Zhang, N. Almaula, C. K. Mathews, and M. Inouye. 1995. The gene for nucleoside diphosphate kinase functions as a mutator gene in Escherichia coli. J. Mol. Biol. 254:337-341.
17. Maher, V. M., L. M. Ouellette, R. D. Curren, and J. J. McCormick. 1976. Frequency of UV light-induced mutations is higher in xeroderma pigmentosum variant cells than in normal human cells. Nature 261:593-595.
18. Markham, B. E., J. W. Little, and D. W. Mount. 1981. Nucleotide sequence of the lexA gene of Escherichia coli K-12. Nucleic Acids Res. 9:4149-4161.
19. Neuhard, J. K., and R. A. Kelln. 1996. Biosynthesis and conversions of pyrimidines, p. 580-599. In F. C. Neidhardt et al. (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. 1. ASM Press, Washington, DC.
20. Nordman, J., and A. Wright. 2008. The relationship between dNTP pool levels and mutagenesis in an Escherichia coli NDP kinase mutant. Proc. Natl. Acad. Sci. U. S. A. 105:10197-10202.
21. Ohmori, H., et al. 2001. The Y-family of DNA polymerases. Mol. Cell 8:7-8.
22. Shen, R., L. J. Wheeler, and C. K. Mathews. 2006. Molecular interactions involving Escherichia coli nucleoside diphosphate kinase. J. Bioenerg. Biomembr. 38:255-259.
23. Shinagawa, H., H. Iwasaki, T. Kato, and A. Nakata. 1988. RecA proteindependent cleavage of UmuD protein and SOS mutagenesis. Proc. Natl. Acad. Sci. U. S. A. 85:1806-1810.
24. Strauss, B. S. 1991. The "A rule" of mutagen specificity: a consequence of DNA polymerase bypass of non-instructional lesions? Bioessays 13:79-84.
25. Tang, M., et al. 1998. Biochemical basis of SOS-induced mutagenesis in Escherichia coli: reconstitution of in vitro lesion bypass dependent on the UmuD′2C mutagenic complex and RecA protein. Proc. Natl. Acad. Sci. U. S. A. 95:9755-9760.
26. Tang, M., et al. 2000. Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis. Nature 404:1014-1018.
27. Tang, M., et al. 1999. UmuD′(2)C is an error-prone DNA polymerase, Escherichia coli pol V. Proc. Natl. Acad. Sci. U. S. A. 96:8919-8924.
28. Woodgate, R., and D. G. Ennis. 1991. Levels of chromosomally encoded Umu proteins and requirements for in vivo UmuD cleavage. Mol. Gen. Genet. 229:10-16.