A 2-D gel reference map of the basic human heart proteome

Proteomics

Volumn 11, Issue 17, 2011, Pages 3582-3586

  Polden, Julie ^a   Mcmanus, Ciara A ^a   Dos Remedios, Cris ^b   Dunn, Michael J ^a  

^a UNIVERSITY COLLEGE DUBLIN   (Ireland)

^b UNIVERSITY OF SYDNEY   (Australia)

Author keywords

2 DE; Basic proteome; Biomedicine; Heart; Left ventricle; Paper bridge loading

Indexed keywords

BASIC PROTEIN; PROTEOME;

ALKALINITY; ARTICLE; DATA ANALYSIS SOFTWARE; HEART; HUMAN; HUMAN TISSUE; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; REFERENCE DATABASE; SPECTROMETRY; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HUMANS; HYDROGEN-ION CONCENTRATION; MYOCARDIUM; PROTEOME;

EID: 80051817548     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201000182     Document Type: Article

References (22)

1. Lloyd-Jones, D., Adams, R., Carnethon, M., De Simone, G. et al., Heart disease and stroke statistics--2009 update: a report from the American Heart Association statistics committee and stroke statistics subcommittee. Circulation 2009, 119, e21-181.
2. Huss, J. M., Kelly, D. P., Mitochondrial energy metabolism in heart failure: a question of balance. J. Clin. Invest. 2005, 115, 547-555.
3. Braunwald, E., Biomarkers in heart failure. New Engl. J. Med. 2008, 358, 2148-2159.
4. Hamdani, N., Kooij, V., Van Dijk, S., Merkus, D. et al., Sarcomeric dysfunction in heart failure. Cardiovasc. Res. 2008, 77, 649-658.
5. Matt, P., Carrel, T., White, M., Lefkovits, I. et al., Proteomics in cardiovascular surgery. J. Thoracic. Cardiovasc. Surg. 2007, 133, 210-214.
6. Jaffe, A., New standard for the diagnosis of acute myocardial infarction. Cardiol. Rev. 2001, 9, 318-322.
7. McGregor, E., Dunn, M., Proteomics of heart disease. Human Mol. Genet. 2003, 12, R135.
8. Gramolini, A., Kislinger, T., Alikhani-Koopaei, R., Fong, V. et al., Comparative proteomics profiling of a phospholamban mutant mouse model of dilated cardiomyopathy reveals progressive intracellular stress responses. Mol. Cell. Proteomics 2008, 7, 519-533.
9. Hein, S., Kostin, S., Heling, A., Maeno, Y. et al., The role of the cytoskeleton in heart failure. Cardiovasc. Res. 2000, 45, 273.
10. Anderson, N., Anderson, N., The human plasma proteome: history, character, and diagnostic prospects. Mol. Cell. Proteomics 2002, 1, 845-867.
11. Corthals, G. L., Wasinger, V. C., Hochstrasser, D. F., Sanchez, J. C., The dynamic range of protein expression: a challenge for proteomic research. Electrophoresis 2000, 21, 1104-1115.
12. Pennington, K., McGregor, E., Beasley, C. L., Everall, I. et al., Optimization of the first dimension for separation by two-dimensional gel electrophoresis of basic proteins from human brain tissue. Proteomics 2004, 4, 27-30.
13. Bae, S. H., Harris, A. G., Hains, P. G., Chen, H. et al., Strategies for the enrichment and identification of basic proteins in proteome projects. Proteomics 2003, 3, 569-579.
14. Kane, L., Yung, C., Agnetti, G., Neverova, I. et al., Optimization of paper bridge loading for 2-DE analysis in the basic pH region: application to the mitochondrial subproteome. Proteomics 2006, 6, 5683-5687.
15. Sabounchi-Schütt, F., Åström, J., Olsson, I., Eklund, A. et al., An Immobiline DryStrip application method enabling high-capacity two-dimensional gel electrophoresis. Electrophoresis 2000, 21, 3649-3656.
16. Westbrook, J. A., Yan, J. X., Wait, R., Welson, S. Y. et al., Zooming-in on the proteome: very narrow-range immobilised pH gradients reveal more protein species and isoforms. Electrophoresis 2001, 22, 2865-2871.
17. Westbrook, J., Wheeler, J., Wait, R., Welson, S. et al., The human heart proteome: two-dimensional maps using narrow-range immobilised pH gradients. Electrophoresis 2006, 27, 1547-1555.
18. Evans, G., Wheele, C., Corbett, J., Dunn, M., Construction of HSC-2DPAGE: a two-dimensional gel electrophoresis database of heart proteins. Electrophoresis 1997, 18, 471-479.
19. Yan, J. X., Wait, R., Berkelman, T., Harry, R. A. et al., A modified silver staining protocol for visualization of proteins compatible with matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry. Electrophoresis 2000, 21, 3666-3672.
20. Martens, L., Hermjakob, H., Jones, P., Adamski, M. et al., PRIDE: the proteomics identifications database. Proteomics 2005, 5, 3537-3545.
21. Barsnes, H., Vizcaíno, J., Eidhammer, I., Martens, L., PRIDE Converter: making proteomics data-sharing easy. Nat. Biotechnol. 2009, 27, 598-599.
22. Mostaguir, K., Hoogland, C., Binz, P.-A., Appel, R. D., The Make 2D-DB II package: conversion of federated two-dimensional gel electrophoresis databases into a relational format and interconnection of distributed databases. Proteomics 2003, 3, 1441-1444.