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Volumn 35, Issue 6, 2011, Pages 515-525

Detection of cis-acting regulatory SNPs using allelic expression data

Author keywords

Allelic expression imbalance; CDNA; Cis acting regulatory SNP; Genomic DNA; Likelihood ratio test; Linkage phase; Mixture model; Parametric bootstrap

Indexed keywords

ALLELIC EXPRESSION; ARTICLE; COMPUTER SIMULATION; GENE EXPRESSION; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENOTYPE; HAPLOTYPE; HETEROZYGOTE; HOMOZYGOTE; SINGLE NUCLEOTIDE POLYMORPHISM; STUDENT T TEST;

EID: 80051803605     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.20601     Document Type: Article
Times cited : (11)

References (35)
  • 1
    • 0001344607 scopus 로고
    • One the theory of random mating
    • Bennett JH. 1954. One the theory of random mating. Ann Eugenics 18:311-317.
    • (1954) Ann Eugenics , vol.18 , pp. 311-317
    • Bennett, J.H.1
  • 4
    • 0035638044 scopus 로고    scopus 로고
    • Large sample distribution of the likelihood ratio test for normal mixtures
    • Chen H, Chen J. 2001. Large sample distribution of the likelihood ratio test for normal mixtures. Can J Stat 29:201-216.
    • (2001) Can J Stat , vol.29 , pp. 201-216
    • Chen, H.1    Chen, J.2
  • 5
    • 70350335073 scopus 로고    scopus 로고
    • Shrinkage estimators for robust and efficient inference in haplotype-based case-control studies
    • Chen Y-H, Chatterjee N, Carroll R. 2009. Shrinkage estimators for robust and efficient inference in haplotype-based case-control studies. J Am Stat Assoc 104:220-233.
    • (2009) J Am Stat Assoc , vol.104 , pp. 220-233
    • Chen, Y.-H.1    Chatterjee, N.2    Carroll, R.3
  • 6
    • 68949211709 scopus 로고    scopus 로고
    • Genetics of human gene expression: mapping DNA variants that influence gene expression
    • Cheung VG, Spielman RS. 2009. Genetics of human gene expression: mapping DNA variants that influence gene expression. Nat Rev Genet 10:595-604.
    • (2009) Nat Rev Genet , vol.10 , pp. 595-604
    • Cheung, V.G.1    Spielman, R.S.2
  • 7
    • 27644482314 scopus 로고    scopus 로고
    • Mapping determinants of human gene expression by regional and genome-wide association
    • Cheung VG, Spielman RS, Ewens KG, Weber TM, Morley M, Burdick JT. 2005. Mapping determinants of human gene expression by regional and genome-wide association. Nature 437:1365-1369.
    • (2005) Nature , vol.437 , pp. 1365-1369
    • Cheung, V.G.1    Spielman, R.S.2    Ewens, K.G.3    Weber, T.M.4    Morley, M.5    Burdick, J.T.6
  • 10
    • 77952363272 scopus 로고    scopus 로고
    • Chromosome 9p21 SNPs associated with multiple disease phenotypes correlate with ANRIL expression
    • Cunnington MS, Santibánez Koref MF, Mayosi BM, Burn J, Keavney B. 2010. Chromosome 9p21 SNPs associated with multiple disease phenotypes correlate with ANRIL expression. PLoS Genet 6:e1000899.
    • (2010) PLoS Genet , vol.6
    • Cunnington, M.S.1    Santibánez Koref, M.F.2    Mayosi, B.M.3    Burn, J.4    Keavney, B.5
  • 12
    • 0033794938 scopus 로고    scopus 로고
    • Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data
    • Fallin D, Schork NJ. 2000. Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data. Am J Hum Genet 67:947-959.
    • (2000) Am J Hum Genet , vol.67 , pp. 947-959
    • Fallin, D.1    Schork, N.J.2
  • 13
    • 77952497530 scopus 로고    scopus 로고
    • Allelic expression imbalance at high-density lipoprotein cholesterol locus MMAB-MVK
    • Fogarty MP, Xiao R, Prokunina-Olsson L, Scott LJ, Mohlke KL. 2010. Allelic expression imbalance at high-density lipoprotein cholesterol locus MMAB-MVK. Hum Mol Genet 19:1921-1929.
    • (2010) Hum Mol Genet , vol.19 , pp. 1921-1929
    • Fogarty, M.P.1    Xiao, R.2    Prokunina-Olsson, L.3    Scott, L.J.4    Mohlke, K.L.5
  • 15
    • 47249142778 scopus 로고    scopus 로고
    • Revealing the architecture of gene regulation: the promise of eQTL studies
    • Gilad Y, Rifkin SA, Pritchard JK. 2008. Revealing the architecture of gene regulation: the promise of eQTL studies. Trends Genet 24:408-415.
    • (2008) Trends Genet , vol.24 , pp. 408-415
    • Gilad, Y.1    Rifkin, S.A.2    Pritchard, J.K.3
  • 16
    • 0000881495 scopus 로고
    • A failure of likelihood asymptotics for normal mixtures
    • In: LeCam L, Olshen RA, editors., Belmont, CA: Wadsworth
    • Hartigan JA. 1985. A failure of likelihood asymptotics for normal mixtures. In: LeCam L, Olshen RA, editors. Proceedings of the Berk Conference in Honor of J. Neyman and J. Kiefer, Volume 2. 807-810. Belmont, CA: Wadsworth.
    • (1985) Proceedings of the Berk Conference in Honor of J. Neyman and J. Kiefer , vol.2 , pp. 807-810
    • Hartigan, J.A.1
  • 17
    • 78649508578 scopus 로고    scopus 로고
    • MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes
    • Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR. 2010. MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet Epidemiol 34:816-834.
    • (2010) Genet Epidemiol , vol.34 , pp. 816-834
    • Li, Y.1    Willer, C.J.2    Ding, J.3    Scheet, P.4    Abecasis, G.R.5
  • 19
    • 0023570352 scopus 로고
    • On bootstrapping the likelihood ratio test statistic for the number of components in a normal mixture
    • McLachlan GJ. 1987. On bootstrapping the likelihood ratio test statistic for the number of components in a normal mixture. J Appl Statist 36:318-324.
    • (1987) J Appl Statist , vol.36 , pp. 318-324
    • McLachlan, G.J.1
  • 21
    • 84946647418 scopus 로고
    • Combining independent tests of significance
    • Mosteller F, Fisher RA. 1948. Combining independent tests of significance. Am Stat 2:30-31.
    • (1948) Am Stat , vol.2 , pp. 30-31
    • Mosteller, F.1    Fisher, R.A.2
  • 22
    • 49749089301 scopus 로고    scopus 로고
    • Exploiting gene-environment independence for analysis of case-control studies: a shrinkage approach to trade off between bias and efficiency
    • Mukherjee B, Chatterjee N. 2008. Exploiting gene-environment independence for analysis of case-control studies: a shrinkage approach to trade off between bias and efficiency. Biometrics 64:685-694.
    • (2008) Biometrics , vol.64 , pp. 685-694
    • Mukherjee, B.1    Chatterjee, N.2
  • 23
    • 0000238336 scopus 로고
    • A simplex method for function minimization
    • Nelder JA, Mead R. 1965. A simplex method for function minimization. Computer J 7:308-313.
    • (1965) Computer J , vol.7 , pp. 308-313
    • Nelder, J.A.1    Mead, R.2
  • 24
    • 8544252495 scopus 로고    scopus 로고
    • Effect of two- and three-locus linkage disequilibrium on the power to detect marker/phenotype associations
    • Nielson DM, Ehm MG, Zaykin DV, Weir BS. 2004. Effect of two- and three-locus linkage disequilibrium on the power to detect marker/phenotype associations. Genetics 168:1029-1040.
    • (2004) Genetics , vol.168 , pp. 1029-1040
    • Nielson, D.M.1    Ehm, M.G.2    Zaykin, D.V.3    Weir, B.S.4
  • 26
    • 77954763156 scopus 로고    scopus 로고
    • Genome-wide allele-specific analysis: insights into regulatory variation
    • Pastinen T. 2010. Genome-wide allele-specific analysis: insights into regulatory variation. Nat Rev Genet 11:533-538.
    • (2010) Nat Rev Genet , vol.11 , pp. 533-538
    • Pastinen, T.1
  • 30
    • 13844270527 scopus 로고    scopus 로고
    • Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation
    • Stephens M, Scheet P. 2005. Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. Am J Hum Genet 76:449-462.
    • (2005) Am J Hum Genet , vol.76 , pp. 449-462
    • Stephens, M.1    Scheet, P.2
  • 31
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M, Smith NJ, Donnelly P. 2001. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978-989.
    • (2001) Am J Hum Genet , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 33
    • 33748664196 scopus 로고    scopus 로고
    • An exprectation-maximization algorithm for the analysis of allelic expression imbalance
    • Teare MD, Heighway J, Santibánez Koref MF. 2006. An exprectation-maximization algorithm for the analysis of allelic expression imbalance. Am J Hum Genet 79:539-543.
    • (2006) Am J Hum Genet , vol.79 , pp. 539-543
    • Teare, M.D.1    Heighway, J.2    Santibánez Koref, M.F.3
  • 34
    • 0021714070 scopus 로고
    • Third order linkage disequilibrium
    • Thomson G, Baur MP. 1984. Third order linkage disequilibrium. Tissue Antigens 24:250-255.
    • (1984) Tissue Antigens , vol.24 , pp. 250-255
    • Thomson, G.1    Baur, M.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.