Generation of an enriched pool of DNA aptamers for an HER2-overexpressing cell line selected by Cell SELEX

Biotechnology and Applied Biochemistry

Volumn 58, Issue 4, 2011, Pages 226-230

  Dastjerdi, Kazem ^a   Tabar, Gholamreza Hashemi ^a   Dehghani, Hesam ^a   Haghparast, Alireza ^a  

^a FERDOWSI UNIVERSITY OF MASHHAD   (Iran)

Author keywords

aptamer; breast cancer; Cell ELA; Cell SELEX; HER2

Indexed keywords

ADHERENT CELLS; APTAMERS; BREAST CANCER; BREAST CANCER CELLS; CELL LINES; DNA APTAMERS; DNA LIBRARY; ENZYME LINKED IMMUNOSORBENT ASSAY; HER2; HUMAN EPIDERMAL GROWTH FACTOR; LIVE CELL; MOLECULAR PROBES; OVER-EXPRESSION; PCR AMPLIFICATION; SELEX PROCEDURE; SINGLE-STRANDED DNA; SYSTEMATIC EVOLUTION OF LIGANDS BY EXPONENTIAL ENRICHMENTS;

CELL CULTURE; DISEASES; DNA; ENZYMES; LAKES; MONOCLONAL ANTIBODIES; POLYMERASE CHAIN REACTION;

CELLS;

APTAMER; DNA; EPIDERMAL GROWTH FACTOR RECEPTOR 2; SINGLE STRANDED DNA;

ARTICLE; BINDING ASSAY; CANCER CELL CULTURE; CELL ADHESION; CELL ASSAY; CELL ENZYME LINKED ASSAY; COMBINATORIAL CHEMISTRY; CONTROLLED STUDY; DNA LIBRARY; ENZYME LINKED IMMUNOSORBENT ASSAY; GENE EXPRESSION; GENE OVEREXPRESSION; HUMAN; HUMAN CELL; MOLECULAR RECOGNITION; OPTICAL DENSITY; POLYMERASE CHAIN REACTION; PROCESS OPTIMIZATION;

APTAMERS, NUCLEOTIDE; BREAST NEOPLASMS; CELL LINE, TUMOR; DNA PROBES; FEMALE; HUMANS; LIGANDS; RECEPTOR, ERBB-2; SELEX APTAMER TECHNIQUE;

EID: 80051734768     PISSN: 08854513     EISSN: 14708744     Source Type: Journal    
DOI: 10.1002/bab.36     Document Type: Article

References (36)

1. Coussens, L., Yang-Feng, T. L., Liao, Y. C., Chen, E., Gray, A., McGrath, J., Seeburg, P. H., Libermann, T. A., Schlessinger, J., and, Francke, U., (1985) Science (New York, NY). 230, 1132-1136.
2. Owens, M. A., Horten, B. C., and, Da Silva, M. M., (2004) Clin. Breast Cancer 5, 63-69.
3. Yaziji, H., Goldstein, L. C., Barry, T. S., Werling, R., Hwang, H., Ellis, G. K., Gralow, J. R., Livingston, R. B., and, Gown, A. M., (2004) JAMA 291, 1972-1977.
4. Vogel, C., Cobleigh, M. A., Tripathy, D., Gutheil, J. C., Harris, L. N., Fehrenbacher, L., Slamon, D. J., Murphy, M., Novotny, W. F, and, Burchmore, M., (2001) Eur. J. Cancer 37, 25-29.
5. Vogel, C. L., Cobleigh, M. A., Tripathy, D., Gutheil, J. C., Harris, L. N., Fehrenbacher, L., Slamon, D. J., Murphy, M., Novotny, W. F., and, Burchmore, M., (2001) Oncology 61, 37-42.
6. Vogel, C. L., Cobleigh, M. A., Tripathy, D., Gutheil, J. C., Harris, L. N., Fehrenbacher, L., Slamon, D. J., Murphy, M., Novotny, W. F., and, Burchmore, M., (2002) J. Clin. Oncol. 20, 719-726.
7. Ellington, A. D., and, Szostak, J. W., (1990) Nature 346, 818-822.
8. Wochner, A., Menger, M., Orgel, D., Cech, B., Rimmele, M., Erdmann, V. A., and, Glökler, J., (2008) Anal. Biochem. 37, 334-342.
9. Gupta, S., Thirstrup, D., Jarvis, T., Schneider, D., Wilcox, S., Carter, J., Zhang, C., Gelinas, A., Weiss, A., Janjic, N., Baird, G., (2011) Appl. Immunohistochem Mol. Morphol. 19, 273-278.
10. Tuerk, C., and, Gold, L., (1990) Science 249, 505-510.
11. Macaya, R. F., Schultze, P., Smith, F. W., Roe, J. A., and, Feigon, J., (1993) Proc. Natl. Acad. Sci. U S A 90, 3745-3749.
12. Yang, C. J., Jockusch, S., Vicens, M., Turro, N. J., and, Tan, W., (2005) Proc. Natl. Acad. Sci. U S A 102, 17278-172783.
13. Nutiu, R., and, Li, Y., (2005) Angew. Chem. Int. Ed. 44, 1061-1065.
14. Liu, J., and, Lu, Y., (2006) Angew. Chem. 118, 96-100.
15. Shangguan, D., Tang, Z., Mallikaratchy, P., Xiao, Z., and, Tan, W., (2007) Chem. Bio. Chem. 8, 603-606.
16. Stojanovic, M. N., and, Kolpashchikov, D. M., (2004) J. Am. Chem. Soc. 126, 9266-9270.
17. Huang, Y. C., Ge, B., Sen, D., and, Yu, H. Z., (2008) J. Am. Chem. Soc. 130, 8023-8029.
18. Pan, W., Craven, R. C., Qiu, Q., Wilson, C. B., Wills, J. W., Golovine, S., and, Wang, J. F., (1995) Proc. Natl. Acad. Sci. U S A 92, 11509-11513.
19. Shangguan, D., Li, Y., Tang, Z., Cao, Z. C., Chen, H. W., Mallikaratchy, P., Sefah, K., Yang, C. J., and, Tan, W., (2006) Proc. Natl. Acad. Sci. 103, 11838-11843.
20. Tang, Z., Shangguan, D., Wang, K., Shi, H., Sefah, K., Mallikratchy, P., Chen, H. W., Li, Y., and, Tan, W., (2007) Anal. Chem. 79, 4900-4907.
21. Chen, H. W., Medley, C. D., Sefah, K., Shangguan, D., Tang, Z., Meng, L., Smith, J. E., and, Tan, W., (2008) Chem. Med. Chem. 3, 991-1001.
22. Sefah, K., Tang, Z. W., Shangguan, D. H., Chen, H., Lopez-Colon, D., Li, Y., Parekh, P., Martin, J., Meng, L., and, Phillips, J. A., (2009) Leukemia 23, 235-244.
23. Shangguan, D., Meng, L., Cao, Z. C., Xiao, Z., Fang, X., Li, Y., Cardona, D., Witek, R. P., Liu, C., and, Tan, W., (2008) Anal. Chem. 80, 721-728.
24. Ahmed, N., Salsman, V. S., Yvon, E., Louis, C. U., Perlaky, L., Wels, W. S., Dishop, M. K., Kleinerman, E. E., Pule, M., and, Rooney, C. M., (2009) Mol. Ther. 17, 1779-1787.
25. Wang, C., Zhang, M., Yang, G., Zhang, D., Ding, H., Wang, H., Fan, M., Shen, B., and, Shao, N., (2003) J. Biotechnol. 102, 15-22.
26. Kang, H. S., Huh, Y. M., Kim, S., Lee, D. K., (2009) Bull. Korean Chem. Soc. 30, 1827-1832.
27. Cooper, T. A., (1999) Methods Mol. Biol.-clifton then Totowa. 118, 405-418.
28. Pagratis, N. C., (1996) Nucleic Acids Res. 24, 3645-3646.
29. Stoltenburg, R., Reinemann, C., and, Strehlitz, B., (2005) Anal. Bioanalytical Chem. 383, 83-91.
30. Williams, K. P., and, Bartel, D. P., (1995) Nucleic Acids Res. 23, 4220-4221.
31. Gyllensten, U. B., and, Erlich, H. A., (1988) Proc. Natl. Acad. Sci. U S A 85, 7652-7656.
32. Hultman, T., Stahl, S., Homes, E., and, Uhlén, M., (1989) Nucleic Acids Res. 17, 4937-4946.
33. Espelund, M., Stacy, R. A., and, Jakobsen, K. S., (1990) Nucleic Acids Res. 18, 6157-6158.
34. Paul, A., Avci-Adali, M., Ziemer, G., and, Wendel, H. P., (2009) Oligonucleotides 19, 243-254.
35. Avci-Adali, M., Paul, A., Wilhelm, N., Ziemer, G., and, Wendel, H. P., (2010) Molecules 15, 1-11.
36. Musheev, M. U., and, Krylov, S. N., (2006) Analyticachimicaacta 564, 91-96.