Inference of population structure and patterns of gene flow in canine heartworm (Dirofilaria immitis)

Journal of Parasitology

Volumn 97, Issue 4, 2011, Pages 602-609

  Belanger, Diana H ^a   Perkins, Susan L ^a   Rockwell, Robert F ^a  

^a DIVISION OF INVERTEBRATE ZOOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA;

ABUNDANCE; ALLELE; CANID; DISEASE VECTOR; DRUG RESISTANCE; GENE FLOW; GENETIC ANALYSIS; GENETIC MARKER; GENETIC VARIATION; HABITAT CORRIDOR; HETEROZYGOSITY; MOVEMENT; NEMATODE; POPULATION STRUCTURE;

ARTICLE; DIROFILARIA IMMITIS; GENE CLUSTER; GENE FLOW; GENETIC ANALYSIS; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHY; HABITAT; HETEROZYGOSITY; NONHUMAN; NORTH AMERICA; POPULATION GENETICS; POPULATION STRUCTURE; UNITED STATES;

ALLELES; ANIMALS; BAYES THEOREM; DIROFILARIA IMMITIS; DNA, HELMINTH; DOGS; DRUG RESISTANCE; FEMALE; GENE FLOW; GENE FREQUENCY; GENETICS, POPULATION; GENOTYPE; LINKAGE DISEQUILIBRIUM; MALE; MICROSATELLITE REPEATS; POLYMORPHISM, GENETIC; UNITED STATES;

MEXICO [NORTH AMERICA]; UNITED STATES;

DIROFILARIA IMMITIS; NEMATODA;

EID: 80051732261     PISSN: 00223395     EISSN: 19372345     Source Type: Journal    
DOI: 10.1645/GE-2679.1     Document Type: Article

References (61)

1. ANDERSON, J. D., S. WILLIAMS-BLANGERO, AND T. J. C. ANDERSON. 2003. Spurious genotypes in female nematodes resulting from contamination with male DNA. Journal of Parasitology 89: 1232-1234. (Pubitemid 38049814)
2. ANDERSON, R. C. 2000. Nematode parasites of vertebrates: Their development and transmission, 2nd ed. CABI Publishing, New York, New York, 650 p.
3. BARKER, C. M., B. G. BOLLING, W. C. BLACK, C. G. MOORE, AND L. EISEN. 2009. Mosquitoes and West Nile virus along a river corridor from prairie to montane habitats in eastern Colorado. Journal of Vector Ecology 34: 276-293.
4. BLOUIN, M. S., J. LUI, AND R. E. BARRY. 1999. Life cycle variation and the genetic structure in nematode populations. Heredity 83: 253-259. (Pubitemid 29498794)
5. -, C. A. YOWELL, C. H. COURTNEY, AND J. B. DAME. 1995. Host movement and the genetic structure of populations of parasitic nematodes. Genetics 141: 1007-1014.
6. BOUTIN-GANACHE, I., M. RAPOSO, M. RAYMOND, AND C. F. DESCHEPPER. 2001. M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. Biotechniques 31: 25-28.
7. BURNHAM, K. P., AND D. R. ANDERSON. 2002. Model selection and multimodel inference: A practical information-theoretic approach, 2nd ed. Springer-Verlag, New York, New York, 496 p.
8. CASTELO, A. T., W. MARTINS, AND G. R. GAO. 2002. TROLL-Tandem repeat occurrence locator. Bioinformatics 18: 634-636.
9. CHURCHER, T. S., A. E. SCHWAB, R. K. PRICHARD, AND M. G. BASANEZ. 2008. An analysis of genetic diversity and inbreeding in Wuchereria bancrofti: Implications for the spread and detection of drug resistance. PLoS Neglected Tropical Diseases 2: e211.
10. CONNER, J. K., AND D. L. HARTL. 2004. A primer of ecological genetics. Sinauer Associates, Sunderland, Massachusetts, 304 p.
11. CORANDER, J., P. MARTTINEN, J. SIREN, AND J. TANG. 2008. Enhanced Bayesian modeling in BAPS software for learning genetics structures of populations. Bioinformatics 9: 539-552.
12. -, J. SIREN, AND E. ARJAS. 2008. Bayesian spatial modeling of genetic population structure. Computational Statistics 23: 111-129.
13. -, P. WALDMANN, AND M. J. SILLANPAA. 2003. Bayesian analysis of genetic differentiation between populations. Genetics 163: 367-374. (Pubitemid 36222679)
14. CORNELL, S. J., V. S. ISHAM, G. SMITH, AND B. T. GRENFELL. 2003. Spatial parasite transmission, drug resistance, and the spread of rare genes. Proceedings of the National Academy of Sciences USA 100: 7401-7405. (Pubitemid 36706449)
15. CRISCIONE, C. D., J. D. ANDERSON, D. SUDIMACK, W. PENG, B. JHA, S. WILLIAMS-BLANGERO, AND T. J. C. ANDERSON. 2007. Disentangling hybridization and host colonization in parasitic roundworms of humans and pigs. Proceedings Biological Sciences 274: 2669-2677. (Pubitemid 47557035)
16. DRUDGE, J. H., S. E. LELAND, AND Z. N, WYANT. 1957. Strain variation in the response of sheep nematodes to the action of phenothiazine. II. Studies on pure infections of Haemonchus contortus. American Journal of Veterinary Resources 18: 317-325.
17. EVANNO, G., R. REGNAUT, AND J. GOUDET. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Molecular Ecology 14: 2611-2620. (Pubitemid 40886055)
18. FALUSH, D., M. STEPHENS, AND J. K. PRITCHARD. 2003. Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 164: 1567-1587. (Pubitemid 37102217)
19. -, AND -. 2007. Inference of population structure using multilocus genotype data: Dominant markers and null alleles. Molecular Ecology Notes 7: 574-578.
20. GARRETSON, P. D., E. E. HAMMOND, T. M. CRAIG, AND P. J. HOLMAN. 2009. Anthelminthic resistant Haemonchus contortus in a giraffe (Giraffa camelopardalis) in Florida. Journal of Zoo and Wildlife Medicine 40: 131-139.
21. GILLEARD, J. S., AND R. N. BEECH. 2007. Population genetics of anthelminthic resistance in parasitic nematodes. Parasitology 134: 1133-1147. (Pubitemid 47026659)
22. GRILLO, V., F. JACKSON, J. CABARET, AND J. S. GILLEARD. 2007. Population genetic analysis of the ovine parasitic nematode Teladorsagiacircumcinta and evidence for cryptic species. International Journal for Parasitology 37: 435-447. (Pubitemid 46231225)
23. HAMILTON, M. B., E. L. PINCUS, A. DIFIORE, AND R. C. FLEISCHER. 1999. Microsatellite-enhanced genomic library construction streptavidinbiotin bench version SNX linker. Biotechniques 27: 500-507.
24. HAWDON, J. M., T. LI, B. ZHAN, AND M. S. BLOUIN. 2001. Genetic structure of populations of the human hookworm, Necator americanus, in China. Molecular Ecology 10: 1433-1437. (Pubitemid 32526118)
25. HEDRICK, P. W. 2005. A standardized genetic differentiation measure. Evolution 59: 1633-1638. (Pubitemid 41266769)
26. HOLM, L., V. LOESCHCKE, AND C. BENDIXEN. 2001. Elucidation of the molecular basis of a null allele in a rainbow trout microsatellite. Marine Biotechnology 3: 555-560. (Pubitemid 34115372)
27. JOHNSON, P. C. D., L. M. I. WEBSTER, A. ADAM, R. BUCKLAND, D. A. DAWSON, AND L. F. KELLER. 2006. Abundant variation in microsatellites of the parasitic nematode Trichostrongylus tenuis and linkage to a tandem repeat. Molecular and Biochemical Parasitology 148: 210-218. (Pubitemid 43946517)
28. KAPLAN, R. M. 2004. Drug resistance in nematodes of veterinary importance: A status report. Trends in Parasitology 20: 477-481. (Pubitemid 39195057)
29. LATCH, E. K., G. DHARMARAJAN, J. C. GLAUBITZ, AND O. E. RHODES. 2006. Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation. Conservation Genetics 7: 295-302. (Pubitemid 43873283)
30. LEATHWICK, D. M., W. E. POMROY, AND A. C. HEATH. 2001. Anthelmintic resistance in New Zealand. New Zealand Veterinary Journal 49: 227-235. (Pubitemid 33396012)
31. LEE, S., H. KIM, S. CHONG, T. A. KLEIN, AND W. LEE. 2007. Molecular survey of Dirofilaria immitis and Dirofilaria repens by direct PCR for wild caught mosquitoes in the Republic of Korea. Veterinary Parasitology 148: 149-155. (Pubitemid 47161111)
32. MCKELLAR, Q. A., AND F. JACKSON. 2004. Veterinary anthelminthics: Old and new. Trends in Parasitology 20: 456-461.
33. MEIRMANS, P. G. 2006. Using the AMOVA framework to estimate a standardized genetic differentiation measure. Evolution 60: 2399-2402. (Pubitemid 44925478)
34. -, AND P. H. VAN TIENDEREN. 2004. GENOTYPE and GENODIVE: Two programs for the analysis of genetic diversity of asexual organisms. Molecular Ecology Notes 4: 792-794. (Pubitemid 39569241)
35. MORTENSEN, L. L., L. H. WILLIAMSON, T. H. TERRILL, R. A. KIRCHER, M. LARSEN, AND R. M. KAPLAN. 2003. Evaluation of prevalence and clinical implications of anthelmintic resistance in gastrointestinal nematodes in goats. Journal of the American Veterinary Medical Association 223: 495-500. (Pubitemid 36988720)
36. PEAKALL, R., AND P. E. SMOUSE. 2006. GENALEX 6: Genetic analysis in Excel. Molecular Ecology Notes 6: 288-295.
37. PENCE, D. B., M. E. TEWES, AND L. L. LAACK. 2003. Helminths of the ocelot from southern Texas. Journal of Wildlife Diseases 39: 683-689. (Pubitemid 38847481)
38. PRICHARD, R. K. 2005. Is anthelminthic resistance a concern for heartworm control? What can we learn from the human filariasis programš Veterinary Parasitology 133: 243-253. (Pubitemid 41405857)
39. PRITCHARD, J. K., M. STEVENS, AND P. DONNELLY. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959. (Pubitemid 30397141)
40. REDMAN, E., E. PACKARD, V. GRILLO, J. SMITH, F. JACKSON, AND J. S. GILLEARD. 2008. Microsatellite analysis reveals marked genetic differentiation between Haemonchus contortus laboratory isolates and provides a rapid system of genetic fingerprinting. International Journal for Parasitology 38: 111-122. (Pubitemid 350262791)
41. RICE, W. R. 1989. Analyzing table of statistical tests. Evolution 43: 223-249.
42. RILEY, S. P. D., J. F. FOLEY, AND B. CHOMEL. 2004. Exposure to feline and canine pathogens in bobcats and grey foxes in urban and rural zones of a national park in California. Journal of Wildlife Diseases 40: 11-22. (Pubitemid 39026750)
43. ROUSSET, F. 2008. GENEPOP '007: A complete reimplementation of the GENEPOP software for Windows and Linux. Molecular Ecology Resources 8: 103-106. (Pubitemid 350231212)
44. ROY, M. S., E. GEFFEN, D. SMITH, E. A. OSTRANDER, AND R. K. WAYNE. 1994. Patterns of differentiation and hybridization in North American wolflike canids, revealed by analysis of microsatellite loci. Molecular Biology and Evolution 11: 553-570. (Pubitemid 24198533)
45. SACKS, B. N., S. K. BROWN, AND H. B. ERNEST. 2004. Population structure of California coyotes corresponds to habitat specific breaks and illuminates species history. Molecular Ecology 13: 1265-1275. (Pubitemid 38504429)
46. -, AND E. P. CASWELL-CHEN. 2003. Reconstructing the spread of Dirofilaria immitis in California coyotes. Journal of Parasitology 89: 319-323. (Pubitemid 36523221)
47. -, B. B. CHOMEL, AND R. W. KASTEN. 2004. Modeling the distribution and abundance of non-native parasite, canine heartworm, in California coyotes. Oikos 105: 415-425. (Pubitemid 38492525)
48. -, D. L. WOODWARD, AND A. E. COLWELL. 2003. A long-term study of non-native-heartworm transmission among coyotes in a Mediterranean ecosystem. Okikos 102: 478-490. (Pubitemid 36996690)
49. SCHWAB, A. E., T. S. CHURCHER, A. J. SCHWAB, M. G. BASANEZ, AND R. K. PRICHARD. 2006. Population genetics of concurrent selection with albendazole and ivermectin or diethylcarbamide on the possible spread of albendazole resistance in Wuchereria bancrofti. Parasitology 133: 589-601. (Pubitemid 44624102)
50. SCHWARTZ, M. K., AND K. S. MCKELVEY. 2009. Why sampling scheme matters: The effect of sampling scheme on landscape genetic results. Conservation Genetics 10: 441-452.
51. SCHWENKENBECKER, J. M., T. WIRTH, L. F. SCHNUR, C. L. JAFFE, H. SCHALLIG, A. AL-JAWABREH, O. HAMARSHEH, K. AZMI, F. PRATLONG, AND G. SCHONIAN. 2006. Microsatellite analysis reveals genetic structure of Leishmania tropica. International Journal for Parasitology 36: 237-246. (Pubitemid 43208990)
52. TANG, J., W. P. HANAGE, C. FRASER, AND J. CORANDER. 2009. Identifying currents in the gene pool for bacterial populations using an integrative approach. PLoS Computational Biology 5: e1000455.
53. THANGADURAI, R., S. L. HOTI, N. PRADEEP KUMAR, AND P. K. DAS. 2006. Phylogeography of human lymphatic filarial parasite Wuchereria bancrofti in India. Acta Tropica 98: 297-304. (Pubitemid 44066289)
54. TRAVERSA, D., G. VON SAMSON-HIMMELSTJERNA, J. DEMELER, P. MILILLO, S. SCHURMANN, H. BARNES, D. OTRANTO, S. PERRUCCI, A. F. DI REGALBANO, P. BERALDO ET AL. 2009. Antihelminthic resistance in cyathostomin populations from horse yards in Italy, United Kingdom, and Germany. Parasites and Vectors 2: S2.
55. VAN OOSTERHOUT, C., W. F. HUTCHINSON, D. P.M.WILLS, AND P. SHIPLEY. 2004. MICRO-CHECKER: Software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4: 535-538. (Pubitemid 39147523)
56. VENKATSAN, M., AND J. L. RASGON. 2010. Population genetic data suggest a role for mosquito-mediated dispersal of West Nile virus across the western United States. Molecular Ecology 19: 1573-1584.
57. VEZZANI, D., AND A. E. CARBAJO. 2006. Spatial and temporal transmission risk of Dirofilaria immitis in Argentina. International Journal for Parasitology 36: 1463-1472. (Pubitemid 44781333)
58. WAPLES, R. S., AND O. GAGGIOTTI. 2006. What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity. Molecular Ecology 15: 1419-1439.
59. WEBSTER, L. M. I., P. C. D. JOHNSON, A. ADAM, B. K. MABLE, AND L. F. KELLER. 2007. Macrogeographic population structure in a parasitic nematode with avian hosts. Veterinary Parasitology 144: 93-103. (Pubitemid 46186672)
60. WEIR, B. S., AND C. C. COCKERHAM. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370. (Pubitemid 16277759)
61. WILSON, G. A., AND B. RANNALA. 2003. Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163: 1177-1191. (Pubitemid 36417957)