메뉴 건너뛰기




Volumn 84, Issue 2, 2011, Pages

Robustness of glycolysis in yeast to internal and external noise

Author keywords

[No Author keywords available]

Indexed keywords

EFFECTIVE PARAMETERS; ENERGY DEMANDS; EXPERIMENTAL STUDIES; EXTERNAL NOISE; FULL-SCALE MODELS; IMPERFECT MIXING; INTRACELLULAR NETWORKS; METABOLITE CONCENTRATIONS; NUMERICAL INTEGRATIONS; PARAMETER SPACES; RATE EQUATIONS; SIDE EFFECT;

EID: 80051649536     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.84.021913     Document Type: Article
Times cited : (19)

References (42)
  • 1
    • 0035917865 scopus 로고    scopus 로고
    • SCIEAS 0036-8075 10.1126/science.1058079
    • T. Pfeiffer, S. Schuster, and S. Bonhoeffer, Science SCIEAS 0036-8075 10.1126/science.1058079 292, 504 (2001).
    • (2001) Science , vol.292 , pp. 504
    • Pfeiffer, T.1    Schuster, S.2    Bonhoeffer, S.3
  • 2
    • 0036333748 scopus 로고    scopus 로고
    • SCIEAS 0942-9352 10.1524/zpch.2002.216.1.051
    • T. Pfeiffer and S. Bonhoeffer, Z. Phys. Chem. SCIEAS 0942-9352 10.1524/zpch.2002.216.1.051 216, 51 (2002).
    • (2002) Z. Phys. Chem. , vol.216 , pp. 51
    • Pfeiffer, T.1    Bonhoeffer, S.2
  • 3
    • 34447557916 scopus 로고    scopus 로고
    • Principles of optimal metabolic network operation
    • DOI 10.1038/msb4100169, PII MSB4100169
    • J. Nielsen, Mol. Syst. Biol. SCIEAS 1744-4292 10.1038/msb4100169 3, 126 (2007). (Pubitemid 47067425)
    • (2007) Molecular Systems Biology , vol.3 , pp. 126
    • Nielsen, J.1
  • 4
    • 43449132092 scopus 로고    scopus 로고
    • JTBIAP 0022-5193 10.1016/j.jtbi.2007.12.008
    • S. Schuster, T. Pfeiffer, and D. A. Fell, J. Theor. Biol. JTBIAP 0022-5193 10.1016/j.jtbi.2007.12.008 252, 497 (2008).
    • (2008) J. Theor. Biol. , vol.252 , pp. 497
    • Schuster, S.1    Pfeiffer, T.2    Fell, D.A.3
  • 5
    • 0032079021 scopus 로고    scopus 로고
    • Kinetic and thermodynamic principles determining the structural design of ATP-producing systems
    • DOI 10.1006/bulm.1997.0028
    • A. Stephani and R. Heinrich, B. Math. Biol. BMTBAP 0092-8240 10.1006/bulm.1997.0028 60, 505 (1998). (Pubitemid 28345495)
    • (1998) Bulletin of Mathematical Biology , vol.60 , Issue.3 , pp. 505-543
    • Stephani, A.1    Heinrich, R.2
  • 7
    • 0016258153 scopus 로고
    • FEBLAL 0014-5793 10.1016/0014-5793(74)80672-1
    • A. Goldbeter, FEBS Lett. FEBLAL 0014-5793 10.1016/0014-5793(74)80672-1 43, 327 (1974).
    • (1974) FEBS Lett. , vol.43 , pp. 327
    • Goldbeter, A.1
  • 8
    • 0014258550 scopus 로고
    • EJBCAI 0014-2956 10.1111/j.1432-1033.1968.tb00175.x
    • E. Sel'kov, Eur. J. Biochem. EJBCAI 0014-2956 10.1111/j.1432-1033.1968. tb00175.x 4, 79 (1967).
    • (1967) Eur. J. Biochem. , vol.4 , pp. 79
    • Sel'Kov, E.1
  • 9
    • 0030606327 scopus 로고    scopus 로고
    • Control analysis of glycolytic oscillations
    • DOI 10.1016/S0301-4622(96)02195-3, PII S0301462296021953
    • M. Bier, B. Teusink, B. N. Kholodenkoo, and H. V. Westerhoff, Biophys. Chem. BICIAZ 0301-4622 10.1016/S0301-4622(96)02195-3 62, 15 (1996). (Pubitemid 26396423)
    • (1996) Biophysical Chemistry , vol.62 , Issue.1-3 , pp. 15-24
    • Bier, M.1    Teusink, B.2    Kholodenko, B.N.3    Westerhoff, H.V.4
  • 10
    • 34250534899 scopus 로고
    • 0017-9957 10.1007/BF01611617
    • B. Hess and K. Brand, Helgoland Mar. Res. 0017-9957 10.1007/BF01611617 14, 129 (1966).
    • (1966) Helgoland Mar. Res. , vol.14 , pp. 129
    • Hess, B.1    Brand, K.2
  • 11
    • 0019424602 scopus 로고
    • SCIEAS 0036-8075 10.1126/science.6450447
    • P. H. Richter and J. Ross, Science SCIEAS 0036-8075 10.1126/science. 6450447 211, 715 (1981).
    • (1981) Science , vol.211 , pp. 715
    • Richter, P.H.1    Ross, J.2
  • 13
    • 0032485816 scopus 로고    scopus 로고
    • Sustained oscillations in glycolysis: An experimental and theoretical study of chaotic and complex periodic behavior and of quenching of simple oscillations
    • DOI 10.1016/S0301-4622(98)00122-7, PII S0301462298001227
    • K. Nielsen, P. G. Sørensen, F. Hynne, and H.-G. Busse, Biophys. Chem. BICIAZ 0301-4622 10.1016/S0301-4622(98)00122-7 72, 49 (1998). (Pubitemid 28267516)
    • (1998) Biophysical Chemistry , vol.72 , Issue.1-2 , pp. 49-62
    • Nielsen, K.1    Sorensen, P.G.2    Hynne, F.3    Busse, H.-G.4
  • 14
    • 0036038886 scopus 로고    scopus 로고
    • Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis
    • DOI 10.1046/j.1432-1033.2002.03055.x
    • L. Pritchard and D. B. Kell, Eur. J. Biochem. EJBCAI 0014-2956 10.1046/j.1432-1033.2002.03055.x 269, 3894 (2002). (Pubitemid 34994884)
    • (2002) European Journal of Biochemistry , vol.269 , Issue.16 , pp. 3894-3904
    • Pritchard, L.1    Kell, D.B.2
  • 15
    • 20444459104 scopus 로고    scopus 로고
    • On the mechanisms of glycolytic oscillations in yeast
    • DOI 10.1111/j.1742-4658.2005.04639.x
    • M. F. Madsen, S. Danø, and P. G. Sørensen, FEBS J. EJBCAI 1742-464X 10.1111/j.1742-4658.2005.04639.x 272, 2648 (2005). (Pubitemid 40825413)
    • (2005) FEBS Journal , vol.272 , Issue.11 , pp. 2648-2660
    • Madsen, M.F.1    Dano, S.2    Sorensen, P.G.3
  • 17
    • 64049103901 scopus 로고    scopus 로고
    • in edited by F. C. Boogerd, F. J. Bruggeman, J.-H. S. Hofmeyr, and H. V. Westerhoff (Elsevier, Amsterdam
    • O. Wolkenhauer and M. Ullah, in Towards a Philosophy of Systems Biology, edited by, F. C. Boogerd, F. J. Bruggeman, J.-H. S. Hofmeyr, and, H. V. Westerhoff, (Elsevier, Amsterdam, 2007), pp. 163-179.
    • (2007) Towards A Philosophy of Systems Biology , pp. 163-179
    • Wolkenhauer, O.1    Ullah, M.2
  • 19
    • 0030569895 scopus 로고    scopus 로고
    • In vivo investigations of glucose transport in Saccharomyces cerevisiae
    • DOI 10.1002/(SICI)1097-0290 (19960205)49:3<316::AID-BIT10 >3.0.CO;2-C
    • M. Rizzi, U. Theobald, E. Querfurth, T. Rohrhirsch, M. Baltes, and M. Reuss, Biotechnol. Bioeng. BIBIAU 0006-3592 10.1002/(SICI)1097-0290(19960205)49: 3<316::AID-BIT10>3.0.CO;2-C 49, 316 (1996). (Pubitemid 26032688)
    • (1996) Biotechnology and Bioengineering , vol.49 , Issue.3 , pp. 316-327
    • Rizzi, M.1    Theobald, U.2    Querfurth, E.3    Rohrhirsch, T.4    Baltes, M.5    Reuss, M.6
  • 20
    • 0035846723 scopus 로고    scopus 로고
    • Full-scale model of glycolysis in Saccharomyces cerevisiae
    • DOI 10.1016/S0301-4622(01)00229-0, PII S0301462201002290
    • F. Hynne, S. Danø, and P. G. Sørensen, Biophys. Chem. BICIAZ 0301-4622 10.1016/S0301-4622(01)00229-0 94, 121 (2001). (Pubitemid 34015989)
    • (2001) Biophysical Chemistry , vol.94 , Issue.1-2 , pp. 121-163
    • Hynne, F.1    Dano, S.2    Sorensen, P.G.3
  • 21
    • 33750040836 scopus 로고    scopus 로고
    • Reduction of a biochemical model with preservation of its basic dynamic properties
    • DOI 10.1111/j.1742-4658.2006.05485.x
    • S. Danø, M. F. Madsen, H. Schmidt, and G. Cedersund, FEBS J. BICIAZ 1742-464X 10.1111/j.1742-4658.2006.05485.x 273, 4862 (2006). (Pubitemid 44583511)
    • (2006) FEBS Journal , vol.273 , Issue.21 , pp. 4862-4877
    • Dano, S.1    Madsen, M.F.2    Schmidt, H.3    Cedersund, G.4
  • 22
    • 77955466363 scopus 로고    scopus 로고
    • 0167-2789 10.1016/j.physd.2010.06.004
    • P. D. Kourdis, R. Steuer, and D. A. Goussis, Physica D 0167-2789 10.1016/j.physd.2010.06.004 239, 1798 (2010).
    • (2010) Physica D , vol.239 , pp. 1798
    • Kourdis, P.D.1    Steuer, R.2    Goussis, D.A.3
  • 25
    • 33745711647 scopus 로고    scopus 로고
    • Estimations of intrinsic and extrinsic noise in models of nonlinear genetic networks
    • DOI 10.1063/1.2211787
    • M. Scott, B. Ingalls, and M. Kærn, Chaos CHAOEH 1054-1500 10.1063/1.2211787 16, 026107 (2006). (Pubitemid 44000350)
    • (2006) Chaos , vol.16 , Issue.2 , pp. 026107
    • Scott, M.1    Ingalls, B.2    Kaern, M.3
  • 28
    • 80051626902 scopus 로고    scopus 로고
    • GSL GNU Scientific Library
    • GSL GNU Scientific Library [http://www.gnu.org/software/gsl/].
  • 31
    • 0000029295 scopus 로고
    • JBSYE2 0218-3390 10.1142/S0218339094000131
    • S. Schuster and C. Hilgetag, J. Biol. Syst. JBSYE2 0218-3390 10.1142/S0218339094000131 2, 165 (1994).
    • (1994) J. Biol. Syst. , vol.2 , pp. 165
    • Schuster, S.1    Hilgetag, C.2
  • 32
    • 0033080396 scopus 로고    scopus 로고
    • Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering
    • DOI 10.1016/S0167-7799(98)01290-6, PII S0167779998012906
    • S. Schuster, T. Dandekar, and D. A. Fell, Trends Biotechnol. TRBIDM 0167-7799 10.1016/S0167-7799(98)01290-6 17, 53 (1999). (Pubitemid 29332898)
    • (1999) Trends in Biotechnology , vol.17 , Issue.2 , pp. 53-60
    • Schuster, S.1    Dandekar, T.2    Fell, D.A.3
  • 33
    • 0038281453 scopus 로고    scopus 로고
    • Observing and interpreting correlations in metabolomic networks
    • DOI 10.1093/bioinformatics/btg120
    • R. Steuer, J. Kurths, O. Fiehn, and W. Weckwerth, Bioinformatics BOINFP 1367-4803 10.1093/bioinformatics/btg120 19, 1019 (2003). (Pubitemid 36675824)
    • (2003) Bioinformatics , vol.19 , Issue.8 , pp. 1019-1026
    • Steuer, R.1    Kurths, J.2    Fiehn, O.3    Weckwerth, W.4
  • 35
    • 0003474751 scopus 로고
    • Cambridge University Press, Cambridge, UK
    • W. H. Press, Numerical Recipies in C (Cambridge University Press, Cambridge, UK, 1995).
    • (1995) Numerical Recipies in C
    • Press, W.H.1
  • 37
  • 39
    • 0034092437 scopus 로고    scopus 로고
    • BIOJAU 0006-3495 10.1016/S0006-3495(00)76667-7
    • M. Bier, B. M. Bakker, and H. V. Westerhoff, Biophys. J. BIOJAU 0006-3495 10.1016/S0006-3495(00)76667-7 78, 1087 (2000).
    • (2000) Biophys. J. , vol.78 , pp. 1087
    • Bier, M.1    Bakker, B.M.2    Westerhoff, H.V.3
  • 41
    • 36148999067 scopus 로고    scopus 로고
    • JCTPAH 0021-9991 10.1016/j.jcp.2007.09.013
    • K. Hamacher, J. Comput. Phys. JCTPAH 0021-9991 10.1016/j.jcp.2007.09.013 227, 1500 (2007).
    • (2007) J. Comput. Phys. , vol.227 , pp. 1500
    • Hamacher, K.1
  • 42
    • 33745667530 scopus 로고    scopus 로고
    • Adaptation in stochastic tunneling global optimization of complex potential energy landscapes
    • DOI 10.1209/epl/i2006-10058-0
    • K. Hamacher, Europhys. Lett. EULEEJ 0295-5075 10.1209/epl/i2006-10058-0 74, 944 (2006). (Pubitemid 43966569)
    • (2006) Europhysics Letters , vol.74 , Issue.6 , pp. 944-950
    • Hamacher, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.