Characterization of the PRMT gene family in rice reveals conservation of arginine methylation

PLoS ONE

Volumn 6, Issue 8, 2011, Pages

  Ahmad, Ayaz ^a,b   Dong, Yuzhu ^a   Cao, Xiaofeng ^a  

^a INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

FIBRILLARIN; GLYCINE; HISTONE H3; HISTONE H4; METHYLTRANSFERASE; MYELIN BASIC PROTEIN; ONCOPROTEIN; OSPROTEIN ARGININE METHYLTRANSFERASE 1; OSPROTEIN ARGININE METHYLTRANSFERASE 10; OSPROTEIN ARGININE METHYLTRANSFERASE 4; OSPROTEIN ARGININE METHYLTRANSFERASE 5; OSPROTEIN ARGININE METHYLTRANSFERASE 6A; OSPROTEIN ARGININE METHYLTRANSFERASE 6B; PROTEIN ARGININE METHYLTRANSFERASE; UNCLASSIFIED DRUG; ARGININE; HISTONE; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CELL NUCLEUS; CELLULAR DISTRIBUTION; CONTROLLED STUDY; CYTOPLASM; ENZYME ACTIVITY; ENZYME ASSAY; ENZYME SPECIFICITY; GENE; GENE EXPRESSION; GENE LOCATION; GENETIC CONSERVATION; NONHUMAN; NUCLEOTIDE SEQUENCE; OSPRMT1 GENE; OSPRMT10 GENE; OSPRMT4 GENE; OSPRMT5 GENE; OSPRMT6A GENE; OSPRMT6B GENE; PLANT DEVELOPMENT; PLANT GENE; PLANT GENETICS; PRMT GENE; PROTEIN METHYLATION; RICE; SEQUENCE HOMOLOGY; TRANSCRIPTION REGULATION; CELL FRACTIONATION; DRUG ANTAGONISM; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; METHYLATION; MULTIGENE FAMILY; PROTEIN BINDING; PROTEIN TRANSPORT;

ANIMALIA; ARABIDOPSIS THALIANA; LILIOPSIDA; ORYZA SATIVA;

ARGININE; CONSERVED SEQUENCE; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; HISTONES; METHYLATION; MULTIGENE FAMILY; ORYZA SATIVA; PLANT PROTEINS; PROTEIN BINDING; PROTEIN TRANSPORT; PROTEIN-ARGININE N-METHYLTRANSFERASES; SEQUENCE HOMOLOGY, AMINO ACID; SUBCELLULAR FRACTIONS; SUBSTRATE SPECIFICITY;

EID: 80051636584     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0022664     Document Type: Article

References (54)

1. Wolf SS, (2009) The protein arginine methyltransferase family: an update about function, new perspectives and the physiological role in humans. Cell Mol Life Sci 66: 2109-2121.
2. Pahlich S, Zakaryan RP, Gehring H, (2006) Protein arginine methylation: Cellular functions and methods of analysis. Biochem Biophys Acta 1764: 1890-1903.
3. Krause CD, Yang ZH, Kim YS, Lee JH, Cook JR, et al. (2007) Protein arginine methyltransferases: evolution and assessment of their pharmacological and therapeutic potential. Pharmacol Ther 113: 50-87.
4. Bedford MT, (2007) Arginine methylation at a glance. J Cell Sci 120: 4243-4246.
5. Gary JD, Clarke S, (1998) RNA and protein interactions modulated by protein arginine methylation. Prog Nucleic Acid Res Mol Biol 61: 65-131.
6. Bedford MT, Clarke SG, (2009) Protein arginine methylation in mammals: who, what, and why. Mol Cell 33: 1-13.
7. Paik WK, Paik DC, Kim S, (2007) Historical review: the field of protein methylation. Trends Biochem Sci 32: 146-152.
8. Bachand F, (2007) Protein arginine methyltransferases: from unicellular eukaryotes to humans. Eukaryot Cell 6: 889-898.
9. Sayegh J, Clarke SG, (2008) Hsl7 is a substrate-specific type II protein arginine methyltransferase in yeast. Biochem Biophys Res Commun 372: 811-815.
10. Fisk JC, Sayegh J, Zurita-Lopez C, Menon S, Presnyak V, et al. (2009) A type III protein arginine methyltransferase from the protozoan parasite Trypanosoma brucei. J Biol Chem 284: 11590-11600.
11. Niewmierzycka A, Clarke S, (1999) S-Adenosylmethionine-dependent methylation in Saccharomyces cerevisiae. J Biol Chem 274: 814-824.
12. McBride AE, Zurita-Lopez C, Regis A, Blum E, Conboy A, et al. (2007) Protein arginine methylation in Candida albicans: role in nuclear transport. Eukaryot Cell 6: 1119-1129.
13. Lee YH, Stallcup MR, (2009) Minireview: protein arginine methylation of nonhistone proteins in transcriptional regulation. Mol Endocrinol 23: 425-433.
14. Pawlak MR, Scherer CA, Chen J, Roshon MJ, Ruley HE, (2000) Arginine N-methyltransferase 1 is required for early postimplantation mouse development, but cells deficient in the enzyme are viable. Mol Cell Biol 20: 4859-4869.
15. Kzhyshkowska J, Kremmer E, Hofmann M, Wolf H, Dobner T, (2004) Protein arginine methylation during lytic adenovirus infection. Biochem J 383: 259-265.
16. Wang H, Huang ZQ, Xia L, Feng Q, Erdjument-Bromage H, et al. (2001) Methylation of histone H4 at arginine 3 facilitating transcriptional activation by nuclear hormone receptor. Science 293: 853-857.
17. Lakowski TM, Frankel A, (2009) Kinetic analysis of human protein arginine N-methyltransferase 2: formation of monomethyl-and asymmetric dimethyl-arginine residues on histone H4. Biochem J 421: 253-261.
18. Kzhyshkowska J, Schütt H, Liss M, Kremmer E, Stauber R, et al. (2001) Heterogeneous nuclear ribonucleoprotein E1B-AP5 is methylated in its Arg-Gly-Gly (RGG) box and interacts with human arginine methyltransferase HRMT1L1. Biochem J 358: 305-314.
19. Qi C, Chang J, Zhu Y, Yeldandi AV, Rao SM, et al. (2002) Identification of protein arginine methyltransferase 2 as a coactivator for estrogen receptor alpha. J Biol Chem 277: 28624-28630.
20. Meyer R, Wolf SS, Obendorf M, (2007) PRMT2, a member of the protein arginine methyltransferase family, is a coactivator of the androgen receptor. J Steroid Biochem Mol Biol 107: 1-14.
21. Swiercz R, Person MD, Bedford MT, (2005) Ribosomal protein S2 is a substrate for mammalian PRMT3 (protein arginine methyltransferase 3). Biochem J 386: 85-91.
22. Choi S, Jung CR, Kim JY, Im DS, (2008) PRMT3 inhibits ubiquitination of ribosomal protein S2 and together forms an active enzyme complex. Biochem Biophys Acta 1780: 1062-1069.
23. Bachand F, Silver PA, (2004) PRMT3 is a ribosomal protein methyltransferase that affects the cellular levels of ribosomal subunits. EMBO J 23: 2641-2650.
24. Covic M, Hassa PO, Saccani S, Buerki C, Meier NI, et al. (2004) Arginine methyltransferase CARM1 is a promoter-specific regulator of NF- B-dependent gene expression. EMBO J 24: 85-96.
25. Ohkura N, Takahashi M, Yaguchi H, Nagamura Y, Tsukada T, (2005) Coactivator-associated arginine methyltransferase 1, CARM1, affects pre-mRNA splicing in an isoform-specific manner. J Biol Chem 280: 28927-28935.
26. Yadav N, Lee J, Kim J, Shen J, Hu MC, et al. (2003) Specific protein methylation defects and gene expression perturbations in coactivator-associated arginine methyltransferase 1-deficient mice. Proc Natl Acad Sci U S A 100: 6464-6468.
27. Meister G, Fischer U, (2002) Assisted RNP assembly: SMN and PRMT5 complexes cooperate in the formation of spliceosomal UsnRNPs. EMBO J 21: 5853-5863.
28. Richard S, Morel M, Cleroux P, (2005) Arginine methylation regulates IL-2 gene expression: a role for protein arginine methyltransferase 5 (PRMT5). Biochem J 388: 379-386.
29. Dacwag CS, Bedford MT, Sif S, Imbalzano AN, (2009) Distinct protein arginine methyltransferases promote ATP-dependent chromatin remodeling function at different stages of skeletal muscle differentiation. Mol Cell Biol 29: 1909-1921.
30. Boulanger MC, Liang C, Russell RS, Lin R, Bedford MT, et al. (2005) Methylation of Tat by PRMT6 regulates human immunodeficiency virus type 1 gene expression. J Virol 79: 124-131.
31. Marques CJ, Francisco T, Sousa S, Carvalho F, Barros A, et al. (2009) Methylation defects of imprinted genes in human testicular spermatozoa. Fertil Steril 94: 585-594.
32. Pahlich S, Zakaryan RP, Gehring H, (2008) Identification of proteins interacting with protein arginine methyltransferase 8: the Ewing sarcoma (EWS) protein binds independent of its methylation state. Proteins 72: 1125-1137.
33. Yan D, Zhang Y, Niu L, Yuan Y, Cao X, (2007) Identification and characterization of two closely related histone H4 arginine 3 methyltransferases in Arabidopsis thaliana. Biochem J 408: 113-121.
34. Scebba F, De Bastiani M, Bernacchia G, Andreucci A, Galli A, et al. (2007) PRMT11: a new Arabidopsis MBD7 protein partner with arginine methyltransferase activity. Plant J 52: 210-222.
35. Niu L, Zhang Y, Pei Y, Liu C, Cao X, (2008) Redundant requirement for a pair of PROTEIN ARGININE METHYLTRANSFERASE4 homologs for the proper regulation of Arabidopsis flowering time. Plant Physiol 148: 490.
36. Pei Y, Niu L, Lu F, Liu C, Zhai J, et al. (2007) Mutations in the Type II protein arginine methyltransferase AtPRMT5 result in pleiotropic developmental defects in Arabidopsis. Plant Physiol 144: 1913-1923.
37. Wang X, Zhang Y, Ma Q, Zhang Z, Xue Y, et al. (2007) SKB1-mediated symmetric dimethylation of histone H4R3 controls flowering time in Arabidopsis. EMBO J 26: 1934-1941.
38. Deng X, Gu L, Liu C, Lu T, Lu F, et al. (2010) Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing. Proc Natl Acad Sci U S A 107: 19114-19119.
39. Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, et al. (2010) A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature 468: 112-116.
40. Hong S, Song HR, Lutz K, Kerstetter RA, Michael TP, et al. (2010) Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana. Proc Natl Acad Sci 107: 21211-21216.
41. Zhang Z, Zhang S, Zhang Y, Wang X, Li D, et al. (2011) Arabidopsis Floral Initiator SKB1 Confers High Salt Tolerance by Regulating Transcription and Pre-mRNA Splicing through Altering Histone H4R3 and Small Nuclear Ribonucleoprotein LSM4 Methylation. Plant Cell 23: 396-411.
42. Niu L, Lu F, Pei Y, Liu C, Cao X, (2007) Regulation of flowering time by the protein arginine methyltransferase AtPRMT10. EMBO Rep 8: 1190-1195.
43. Stols L, Gu M, Dieckman L, Raffen R, Collart FR, et al. (2002) A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage site. Protein Expr Purif 25: 8-15.
44. Ding Y, Wang X, Su L, Zhai J, Cao S, et al. (2007) SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. Plant Cell 19: 9-22.
45. Liu C, Lu F, Cui X, Cao X, (2010) Histone methylation in higher plants. Annu Rev Plant Biol 61: 395-420.
46. Cheng X, Collins RE, Zhang X, (2005) Structural and sequence motifs of protein (histone) methylation enzymes. Annu Rev Biophys Biomol Struct 34: 267-294.
47. Frankel A, Yadav N, Lee J, Branscombe TL, Clarke S, et al. (2002) The novel human protein arginine N-methyltransferase PRMT6 is a nuclear enzyme displaying unique substrate specificity. J Biol Chem 277: 3537-3543.
48. Boulanger MC, Miranda TB, Clarke S, Di Fruscio M, Suter B, et al. (2004) Characterization of the Drosophila protein arginine methyltransferases DART1 and DART4. Biochem J 379: 283-289.
49. Lee J, Sayegh J, Daniel J, Clarke S, Bedford MT, (2005) PRMT8, a new membrane-bound tissue-specific member of the protein arginine methyltransferase family. J Biol Chem 280: 32890-32896.
50. Scott HS, Antonarakis SE, Lalioti MD, Rossier C, Silver PA, et al. (1998) Identification and characterization of two putative human arginine methyltransferases (HRMT1L1 and HRMT1L2). Genomics 48: 330-340.
51. Lynch M, Conery JS, (2000) The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
52. Boggs J, (2006) Myelin basic protein: a multifunctional protein. Cell Mol life Sci 63: 1945-1961.
53. Ahmad A, Zhang Y, Cao XF, (2010) Decoding the epigenetic language of plant development. Mol Plant 3: 719-728.
54. Hyllus D, Stein C, Schnabel K, Schiltz E, Imhof A, et al. (2007) PRMT6-mediated methylation of R2 in histone H3 antagonizes H3 K4 trimethylation. Genes Dev 21: 3369-3380.