A horizontal gene transfer supported the evolution of an early metazoan biomineralization strategy

BMC Evolutionary Biology

Volumn 11, Issue 1, 2011, Pages

  Jackson, Daniel J ^a   MacIs, Luciana ^a   Reitner, Joachim ^a   Wörheide, Gert ^b,c  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b UNIVERSITY OF MUNICH   (Germany)

^c BAYERISCHE STAATSSAMMLUNG FÜR PALÄONTOLOGIE UND GEOLOGIE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ADOPTION BEHAVIOR; BACTERIUM; BIOMINERALIZATION; CALCIFICATION; CAMBRIAN; EVOLUTIONARY BIOLOGY; GENE EXPRESSION; GENE TRANSFER; GENOMICS; LIFE HISTORY TRAIT; METAZOAN; MOLECULAR ANALYSIS; PRECAMBRIAN; PROTEIN; SPONGE;

AMPHIMEDON; ANIMALIA; ASTROSCLERA WILLEYANA; BACTERIA (MICROORGANISMS); METAZOA;

MINERAL; PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; BACTERIUM; BONE MINERALIZATION; EVOLUTION; GENETICS; HORIZONTAL GENE TRANSFER; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; SPONGE (PORIFERA);

AMINO ACID SEQUENCE; ANIMALS; BACTERIA; BASE SEQUENCE; BIOLOGICAL EVOLUTION; CALCIFICATION, PHYSIOLOGIC; GENE TRANSFER, HORIZONTAL; MINERALS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORIFERA; PROTEINS;

EID: 80051581245     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-11-238     Document Type: Article

References (29)

1. Biomineralization and Evolutionary History. Knoll AHK, Rev Min Geo 2003 229 356
2. The Cambrian ''explosion'': Slow-fuse or megatonnage? Morris SC, Proc Natl Acad Sci USA 2000 97 4426 4429 10.1073/pnas.97.9.4426 10781036 (Pubitemid 30238571)
3. Explaining the Cambrian "Explosion" of animals. Marshall CR, Ann Rev Earth Plan Sci 2006 34 355 384 10.1146/annurev.earth.33.031504.103001 (Pubitemid 43853622)
4. Valentine J, Chicago: University Of Chicago Press 2004
5. Phylogenomics revives traditional views on deep animal relationships. Philippe HP, Derelle R, Lopez P, Pick K, Borchiellini C, Boury-Esnault N, Vacelet J, Renard E, Houliston E, Quéinnec E, Da Silva C, Wincker P, Le Guyader H, Leys S, Jackson DJJ, Schreiber F, Erpenbeck D, Morgenstern B, Wörheide GW, Manuel M, Curr Biol 2009 19 706 712 10.1016/j.cub.2009.02.052 19345102
6. Improved phylogenomic taxon sampling noticeably affects non-bilaterian relationships. Pick K, Hervé P, Fabian S, Erpenbeck D, Jackson DJ, Wrede P, Matthias W, Alie A, Burkhard M, Manuel M, Wörheide G, Mol Biol Evol 2010 27 1983 1987 10.1093/molbev/msq089 20378579
7. Sponge paleogenomics reveals an ancient role for carbonic anhydrase in skeletogenesis. Jackson DJ, Macis L, Reitner J, Degnan BM, Wörheide G, Science 2007 316 1893 1895 10.1126/science.1141560 17540861 (Pubitemid 47025787)
8. An evolutionary fast-track to biocalcification. Jackson DJ, Thiel V, Wörheide G, Geobiology 2010 8 191 196 10.1111/j.1472-4669.2010.00236.x 20345891
9. The reef cave dwelling ultraconservative coralline demosponge Astrosclera willeyana LISTER 1900 from the Indo-Pacific-Micromorphology, Ultrastructure, Biocalcification, Isotope Record, Taxonomy, Biogeography, Phylogeny. Wörheide G, Facies 1998 38 1 88 10.1007/BF02537358 (Pubitemid 128749525)
10. Comprehensive splice-site analysis using comparative genomics. Sheth N, Roca X, Hastings ML, Roeder T, Krainer AR, Sachidanandam R, Nuc Acid Res 2006 34 3955 3967 10.1093/nar/gkl556 (Pubitemid 44391011)
11. Functional analysis of the polypyrimidine tract in pre-mRNA splicing. Coolidge CJ, Seely RJ, Patton JG, Nuc Acid Res 1997 25 888 896 10.1093/nar/25.4.888 (Pubitemid 27299849)
12. Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine. Newby M, Greenbaum N, Nat Struct Biol 2002 9 958 965 10.1038/nsb873 12426583 (Pubitemid 35417067)
13. The evolutionary origin of animal cellulose synthase. Nakashima K, Yamada L, Satou Y, Azuma J, Satoh N, Dev Gen Evol 2004 214 81 88 10.1007/s00427-003- 0379-8 (Pubitemid 38324957)
14. Horizontal gene transfer in eukaryotic evolution. Keeling PJ, Palmer JD, Nat Rev Gen 2008 9 605 618 10.1038/nrg2386
15. Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity. Sharp PM, Cowe E, Higgins DG, Shields DC, Wolfe KH, WRIGHT F, Nuc Acid Res 1988 16 8207 8211 10.1093/nar/16.17.8207
16. Horizontal transfer of a phosphatase gene as evidence for mosaic structure of the Salmonella genome. Groisman EA, Saier MH, Ochman H, EMBO J 1992 11 1309 1316 1339343
17. Evidence for horizontal gene transfer in Escherichia coli speciation. Médigue C, Rouxel T, Vigier P, Hénaut A, Danchin A, J Mol Biol 1991 222 851 856 10.1016/0022-2836(91)90575-Q 1762151 (Pubitemid 121003469)
18. Mosaic structure of large regions of the Lactococcus lactis subsp. cremoris chromosome. Delorme C, Godon JJ, Ehrlich SD, Renault P, Microbiology 1994 140 3053 3060 10.1099/13500872-140-11-3053 7812446 (Pubitemid 24359535)
19. Codon usage and tRNA content in unicellular and multicellular organisms. Ikemura T, Mol Biol Evol 1985 2 13 34 3916708 (Pubitemid 15152046)
20. Horizontal gene transfer in prokaryotes: quantification and classification. Koonin EV, Makarova KS, Aravind L, Annu Rev Microbiol 2001 55 709 742 10.1146/annurev.micro.55.1.709 11544372 (Pubitemid 32978121)
21. Evolution of glyoxylate cycle enzymes in Metazoa: evidence of multiple horizontal transfer events and pseudogene formation. Kondrashov FA, Koonin EV, Morgunov IG, Finogenova TV, Kondrashova MN, Biol Dir 2006 1 31 10.1186/1745-6150-1-31 (Pubitemid 46711928)
22. Horizontal gene transfer: evidence and possible consequences. Syvanen M, Annu Rev Genet 1994 28 237 261 10.1146/annurev.ge.28.120194.001321 7893125
23. No evidence for lateral gene transfer between salmonids and schistosomes. Grunau C, Boissier J, Nat Genet 2010 42 918 919 10.1038/ng1110-918 20980981
24. A likelihood framework to analyse phyletic patterns. Cohen O, Rubinstein ND, Stern A, Gophna U, Pupko T, Philos Trans R Soc Lond B 2008 363 3903 3911 10.1098/rstb.2008.0177
25. Inference and characterization of horizontally transferred gene families using stochastic mapping. Cohen O, Pupko T, Mol Biol Evol 2010 27 703 713 10.1093/molbev/msp240 19808865
26. Lateral gene transfer and the nature of bacterial innovation. Ochman H, Lawrence JG, Groisman EA, Nature 2000 405 299 304 10.1038/35012500 10830951 (Pubitemid 30337055)
27. The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer. Cohen O, Gophna U, Pupko T, Mol Biol Evol 2011 28 1481 1489 10.1093/molbev/msq333 21149642
28. Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis. Thomas T, Rusch D, Demaere MZ, Yung PY, Lewis M, Halpern A, Heidelberg KB, Egan S, Steinberg PD, Kjelleberg S, ISME J 2010 4 1557 1567 10.1038/ismej.2010.74 20520651
29. Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms. Pearson WR, Genomics 1991 11 635 650 10.1016/0888-7543(91)90071-L 1774068