Isolation and characterization of a new Burkholderia pyrrocinia strain JK-SH007 as a potential biocontrol agent

World Journal of Microbiology and Biotechnology

Volumn 27, Issue 9, 2011, Pages 2203-2215

  Ren, Jia Hong ^a,b   Ye, Jian Ren ^a   Liu, Hui ^a   Xu, Xu Ling ^a   Wu, Xiao Qin ^a  

^a NANJING FORESTRY UNIVERSITY   (China)

^b CHANGZHI UNIVERSITY   (China)

Author keywords

Antagonistic bacteria; Burkholderia pyrrocinia; Identification; Isolation; Poplar canker

Indexed keywords

16S RDNA; ANTAGONISTIC ACTIVITY; ANTAGONISTIC BACTERIA; BACTERIAL ISOLATES; BIOCHEMICAL METHODS; BIOCONTROL AGENT; BURKHOLDERIA; BURKHOLDERIA CEPACIA COMPLEX; CHITINASES; EXTRACELLULAR; GENE SEQUENCE ANALYSIS; HYDROLYTIC ENZYME; IN-CONTROL; INHIBITION ZONES; ISOLATION; ISOLATION AND CHARACTERIZATION; PATHOGENIC ACTIVITY; PLANT GROWTH; PLANT HEIGHT; POPLAR CANKER;

BACTERIA; BACTERIOLOGY; ENZYME ACTIVITY; GENES; IDENTIFICATION (CONTROL SYSTEMS); PLANTS (BOTANY);

BIOCONTROL;

BACTERIA (MICROORGANISMS); BOTRYOSPHAERIA DOTHIDEA; BURKHOLDERIA; BURKHOLDERIA CEPACIA; BURKHOLDERIA CEPACIA COMPLEX; BURKHOLDERIA PYRROCINIA; MACROSPORA; PHOMOPSIS; VALSA SORDIDA;

EID: 80051549636     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-011-0686-6     Document Type: Article

References (90)

1. Allan ND, Kooi C, Sokol PA, Beveridge TJ (2003) Putative virulence factors are released in association with membrane vesicles from Burkholderia cepacia. Can J Microbiol 49: 613-624.
2. Araujo WL, Saridakis HO, Barroso PAV, Aguilar-Vildoso CI, Azevedo JL (2001) Variability and interactions between endophytic bacteria and fungi isolated from leaf tissues of citrus rootstocks. Can J Microbiol 47: 229-236.
3. Bacon CW, Hinton DM (2002) Endophytic and biological control potential of Bacillus mojavensis and related species. Biol Control 23: 274-284.
4. Bal AS, Chanway CP (2000) Isolation and identification of endophytic bacteria from lodgepole pine and western red cedar. Auburn University Web Site, Available: http://www. ag. auburn. edu/argentina/pdfmanuscripts/bal. pdf.
5. Balandreau J, Viallard V, Cournoyer B, Coenye T, Laevens S, Vandamme P (2001) Burkholderia cepacia Genomovar III is a common plant-associated bacterium. Appl Environ Microb 67: 982-985.
6. Bernier SP, Silo-Suh L, Woods DE, Ohman DE, Sokol PA (2003) Comparative analysis of plant and animal models for characterization of Burkholderia cepacia virulence. Infect Immun 71: 5306-5313.
7. Bevivino A, Sarrocco S, Dalmastri C, Tabacchioni S, Cantale C, Chiarini L (1998) Characterization of a free-living maize-rhizosphere population of Burkholderia cepacia: effect of seed treatment on disease suppression and growth promotion of maize. FEMS Microbiol Ecol 27: 225-237.
8. Bevivino A, Dalmastri C, Tabaechioni S, Chiarina L (2000) Efficacy of Burkholderia cepacia MCI 7 on disease suppression and growth promotion of maize. Biol Fert Soils 31: 225-231.
9. Brooks D, Gonzalez CF, Appel DN, Filer TH (1994) Evaluation of endophytic bacteria as potential biocontrol agents for oak wilt. Biol Con 4: 373-381.
10. Budi SW, Tuinen DV, Arnould C, Dumas-Gaudot E, Gianinazzi-Pearson V, Gianinazzi S (2000) Hydrolytic enzyme activity of Paenibacillus sp. strain B2 and effects of the antagonistic bacterium on cell integrity of two soil-borne pathogenic fungi. App Soil Ecol 15: 191-199.
11. Buren AV, Andre C, Ishmaru CA (1993) Biological control of the bacterial ring rot pathogen by endophytic bacteria isolated from potato. Phytopathology 83: 1406.
12. Burkhead KD, Schisler DA, Slininger PJ (1994) Pyrrolnitrin production by biological control agent Pseudomonas cepacia B37w in culture and colonized wounds of potatoes. Appl Environ Microbiol 60: 2031-2039.
13. Burkholder W (1950) Sour skin, a bacterial rot of onion bulbs. Phytopathology 40: 115-117.
14. Caraher E, Reynolds G, Murphy P, McClean S, Callaghan M (2008) Comparison of antibiotic susceptibility of Burkholderia cepacia complex organisms when grown planktonically or as biofilm in vitro. Eur J Clin Microbiol 26(3): 213-216.
15. Cardona ST, Wopperer J, Eberl L, Valvano MA (2005) Diverse pathogenicity of Burkholderia cepacia complex strains in the Caenorhabditis elegans host model. FEMS Microbiol Lett 205: 97-104.
16. Chang WT, Chen YC, Jao CL (2007) Antifungal activity and enhancement of plant growth by Bacillus cereus grown on shellfish chitin wastes. Bioresour Technol 98: 1224-1230.
17. Chiarini L, Bevivino A, Dalmastri C, Tabacchioni S, Visca P (2006) Burkholderia cepacia complex species: health hazards and biotechnological potential. Trends Microbiol 14: 277-286.
18. Coenye T, Lipuma JJ, Henry D, Hoste B, Vandemeulebroecke K, Gillis M, Speert DP, Vandamme P (2001a) Burkholderia cepacia genomovar VI, a new member of the Burkholderia cepacia complex isolated from cystic fibrosis patients. Int J Syst Evol Micr 51: 271-279.
19. Coenye T, Mahenthiralingam E, Henry D, LiPuma JJ, Laevens S, Gillis M, Speert DP, Vandamme P (2001b) Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis related isolates. Int J Syst Evol Micr 51: 1481-1490.
20. Coenye T, Vandamme P, Govan JR, Lipuma JJ (2001c) Taxonomy and identification of the Burkholderia cepacia complex. J Clin M icrobiol 39: 3427-3436.
21. Dalmastri C, Pirone L, Tabacchioni S, Bevivino A, Chiarini L (2006) Efficacy of species-specific recA PCR tests in the identification of Burkholderia cepacia complex environmental isolates. Microbiology 246: 39-45.
22. Davison J (1988) Plant beneficial bacteria. Bio Technol 6: 282-286.
23. Dunne C, Crowley JJ, Moënne-Loccoz Y, Dowling DN, Bruijn S, O'Gara F (1997) Biological control of Pythium ultimum by Stenotrophomonas maltophilia W18 is mediated by an extracellular proteolytic activity. Microbiology 143: 3921-3931.
24. Essghaier B, Fardeau ML, Cayol JL, Haijaoui MR, Boudabous A, Jijakli H, Zouaoui NS (2009) Biological control of grey mould in strawberry fruits by halophilic bacteria. J Appl Microbiol 106: 833-846.
25. Fridlender M, Inbar J, Chet I (1993) Biological control of soilborne plant pathogens by a β-1, 3 glucanase-producing Pseudomonas cepacia. Soil Biol Biochem 25: 1121-1221.
26. Gerhardson B (2002) Biological substitutes for pesticides. Trends Biotechnol 20: 338-343.
27. Govan JR, Hughes JE, Vandamme P (1996) Burkholderia cepacia: medical, taxonomic and ecological issues. J Med Microbiol 45: 395-407.
28. Govindarajan M, Balandreau J, Kwon SW, Weon HY, Lakshminarasimhan C (2008) Effects of the inoculation of Burkholderia vietnamensis and related endophytic diazotrophic bacteria on grain yield of rice. Microb Eco 55: 21-37.
29. Hallmann J, Kloepper JW, Rodriguez-Kabana R, Sikora RA (1995) Endophytic rhizobacteria as antagonists of Meloidogyne incognita on cucumber. Phytopathology 85: 1136.
30. Hebbar KP, Atkinson D, Tucker W, Dart PJ (1992) Suppression Fusarium moniliforme by maize root-associated Pseudomonas cepacia. Soil Biol Biochem 24: 1009-1020.
31. Hebbar KP, Martel MH, Heulin T (1998) Suppression of pre- and post emergence damping off in corn by Burkholderia cepacia. Eur J Plant Pathol 104: 29-36.
32. Heydari A, Misaghi IJ (1998) Biocontrol activity of Burkholderia cepacia against Rhizoctonia solani in herbicide-treated soils. Plant Soil 202: 109-116.
33. Hinton DM, Bacon CW (1995) Enterobacter cloacae is an endophytic symbiont of corn. Mycopathologia 129: 117-125.
34. Höflich G, Wiehe W, Kühn G (1994) Plant growth stimulation by inoculation with symbiotic and associative rhizosphere microorganisms. Cell Mol Life Sci 50: 897-905.
35. Hollis JP (1951) Bacteria in healthy potato tissue. Phytopathology 41: 350-366.
36. Holmes A, Govan J, Goldstein R (1998) The agricultural use of Burkholderia (Pseudomonas) cepacia: a threat to human health? Emerg Infect Dis 4: 221-227.
37. Holt JG, Kreig NR, Sneath PHA, Staley JT, Williams ST (1994) Bergey's manual of determinative bacteriology. Williams and Wilkins, Baltimore.
38. Huang LJ, Su XH (2003) The Advance of Canker Disease-Resistance Breeding in Poplar. World Forestry Res 16: 49-53 (in Chinese).
39. Hwang J, Chilton WS, Benson DM (2002) Pyrrolnitrin production by Burkholderia cepacia and biocontrol of Rhizoctonia stem rot of poinsettia. Biol Control 25: 56-63.
40. Kim PI, Chung KC (2004) Production of an antifungal protein for control of Colletotrichum lagenarium by Bacillus amyloliquefaciens MET0908. FEMS Microbiol Lett 234: 177-183.
41. Kloepper JW, Scher FM, Laliberte M, Tipping B (1986) Emergence-promoting rhizobacteria: description, implications for agriculture. In: Swinburne TR (ed) Iron, siderophores, and plant disease. Plenum Press, New York, pp 155-164.
42. Lambert B, Joos H (1989) Fundamental aspects of rhizobacterial plant growth promotion research. Trends Biotechnol 7: 215-219.
43. Li W, Roberts DP, Dery PD, Meyer SLF, Lohrke S, Lumsden RD, Hebbar KP (2002) Broad spectrum anti-biotic activity and disease suppression by the potential biocontrol agent Burkholderia ambifaria BC-F. Crop Prot 21: 129-135.
44. Mahenthiralingam E, Vandamme P (2005) Taxonomy and pathogenesis of the Burkholderia cepacia complex. Chron Respir Dis 2: 209-217.
45. Mahenthiralingam E, Simpson DA, Speert DP (1997) Identification and characterization of a novel DNA marker associated with epidemic strains of Burkholderia cepacia recovered from patients with cystic fibrosis. J Clin Microbiol 35: 808-816.
46. Mahenthiralingam E, Bischof J, Byrne SK, Radomski C, Davies JE, Av-Gay Y, Vandamme P (2000) DNA-based diagnostic approaches for the identification of Burkholderia cepacia complex, Burkholderia vietnamiensis, Burkholdria multivorans, Burkholderia stabilis, and Burkholderia cepacia genomovars I and III. J Clin Microbio 38: 3165-3173.
47. Mahenthiralingam E, Urban TA, Goldberg JB (2005) The multifarious, multireplicon Burkholderia cepacia complex. Nat Rev Microbiol 3: 144-156.
48. McKevitt AI, Bajaksouzian S, Klinger JD, Woods DE (1989) Purification and characterization of an extracellular protease from Pseudomonas cepacia. Infect Immun 57: 771-778.
49. Minaxi, Saxena J (2010) Characterization of Pseudomonas aeruginosa RM-3 as a Potential Biocontrol Agent. Mycopathologia 170: 181-193.
50. Mukhopadhyay NK, Garrison NK, Hinton DM, Bacon CW, Khush GS, Pan MJ, Rademan S, Kuner K, Hastings JW (1997) Ultrastructural studies on the colonisation of banana tissue and Fusarium oxysporum f. sp. cubense race 4 by the endophytic bacterium Burkholeria cepacia. J Phytopathol 145: 479-486.
51. Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15: 473-497.
52. Ogawa K, Yoshida N, Kariya K, Ohnishi C, Ikeda R (2002) Purification and characterization of a novel chitinase from Burkholderia cepacia strain KH2 isolated from the bed log of Lentinus edodes, Shiitake mushroom. J Gen Appl Microbiol 48: 25-33.
53. Ordentlich A, Elad Y, Chet I (1988) The role of chitinase of Serratia marcescens in biocontrol of Sclerotium rolfsii. Phytopathology 78: 84-92.
54. Parka M, Kima C, Yanga J, Leea H, Shina W, Kimb S, Sa T (2005) Isolation and characterization of diazotrophic growth promoting bacteria from rhizosphere of agricultural crops of Korea. Microbiol Res 160: 127-133.
55. Parke JL (1990) Population dynamics of Pseudomonas cepacia in the pea spermosphere in relation to biocontrol of Pythium. Phytopathology 80: 1307-1311.
56. Parke JL, Gurian-Sherman D (2001) Diversity of the Burkholderia cepacia complex and implications for risk assessment of biological control strains. Annu Rev Phytopathol 39: 225-258.
57. Parker WL, Rathnum ML, Seiner V, Trejo WH, Principe PA, Sykes RB (1984) Cepacin A and Cepacin B, two new antibiotics produced by Pseudomonas cepacia. J Antibiot 37: 431-440.
58. Payne GW, Vandamme P, Morgan SH, LiPuma JJ, Coenye T, Weightman AJ, Jones TH, Mahenthiralingam E (2005) Development of a recA gene-based identification approach for the entire Burkholderia genus. Appl Environ Microbiol 71: 3917-3927.
59. Perin L, Mart′i{dotless}nez-Aguilar L, Castro-Gonz′alez P, Estrada-de LSP, Cabellos-Avelar T, Guedes HV, Reis VM, Caballero-Mellado J (2006) Diazotrophic Burkholderia species associated with field-grown maize and sugarcane. Appl Environ Microbiol 72: 3103-3110.
60. Puente ME, Li CY, Bashan Y (2009) Rock-degrading endophytic bacteria in cacti. Environ Exp Bot 66: 389-401.
61. Quan CS, Zheng W, Liu Q, Ohta Y, Fan SD (2006) Isolation and characterization of a novel Burkholderia cepacia with strong antifungal activity against Rhizoctonia solani. Biocontrol 72(6): 1276-1284.
62. Raaijmakers JM, Vlami M, de Souza JT (2002) Antibiotic production by bacterial biocontrol agents. Anton Leeuw Int J G 81: 537-547.
63. Richardson J, Stead DE, Coutts RHA (2001) Incidence of the cblA major subunit pilin gene among Burkholderia species. FEMS Microbiol Lett 196: 61-66.
64. Romero D, Pérez-García A, Rivera ME, Cazorla FM, Vicente A (2004) Isolation and evaluation of antagonistic bacteria towards the cucurbit powdery mildew fungus Podosphaera fusca. Appl Microbiol Biotechnol 64: 263-269.
65. Sajjan US, Sun L, Goldstein R, Forstner JF (1995a) Cable (Cbl) Type II Pili of Cystic Fibrosis-Associated Burkholderia (Pseudomonas) cepacia: Nucleotide Sequence of the cblA Major Subunit Pilin Gene and Novel Morphology of the Assembled Appendage Fibers. J Bacteriol 177: 1030-1038.
66. Sajjan US, Sun L, Goldstein R, Forstner JF (1995b) Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp. nov. Int J Syst Bact 47: 1188-1200.
67. Sambrook J, Fritsch ED, Maniatis T (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York, pp 155-164.
68. Segonds C, Heulin T, Marty N, Chabanon G (1999) Differentiation of Burkholderia species by PCR-restriction fragment length polymorphism analysis of the 16S rRNA gene and application to cystic fibrosis isolates. J Clin Microbiol 37: 2201-2208.
69. Shoda M (2000) Bacterial control of plant diseases. J Biosci Bioeng 89: 515-521.
70. Sijam K, Dikin A (2005) Biochemical and physiologica characterization of Burkholderia cepacia as biologica control agent. Int J Agri Biol 7: 385-388.
71. Singh RK, Mishra RPM, Jaiswal HK, Kumar V, Pandey SP, Rao SB, Annapurna K (2006) Isolation and identification of natural endophytic rhizobia from rice (Oryza sativa L.) through rDNA PCR-RFLP and sequence analysis. Curr Microbiol 52: 117-122.
72. Sokol PA, Lewis CT, Dennis JJ (1992) Isolation of a novel siderophore from Pseudomonas cepacia. J Med Microbiol 36: 184-189.
73. Speert DP (2001) Understanding Burkholderia cepacia: epidemiology, genomovars, and virulence. Infect Med 18: 49-56.
74. Steve PB, Laura SS, Donald EW, Dennis EO, Pamela AS (2003) Comparative analysis of plant and animal models for characterization of Burkholderia cepacia virulence. Infec Immun 71: 5306-5313.
75. Stone JK, Bacon CW, White JJF (2000) An overview of endophytic microbes: Endophytism defined. Dekker, New York, pp 3-30.
76. Tahtamouni MEW, Hameed KM, Saadoun IM (2006) Biological control of Sclerotinia sclerotiorum using indigenous chitolytic actinomycetes in Jordan. Plant Pathol J 22: 107-114.
77. Teather RM, Wood PJ (1982) Use of Congo red-polysacchatide interaction in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl Environ Microb 43: 777-780.
78. Tervet IW, Hollis JP (1948) Bacteria in the storage organs of healthy plants. Phytopathology 38: 960-967.
79. Thomas MS (2008) Iron acquisition mechanisms of the Burkholderia cepacia complex. Biometals 21: 105-106.
80. Vandamme P, Holmes B, Vancanneyt M, Coenye T, Hoste B, Coopman R, Revets H, Lauwers S, Gillis M, Kersters K, Govan JR (1997) Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp. nov. Int J Syst Bact 47: 1188-1200.
81. Vandamme P, Henry D, Coenye T, Nzula S, Vancanneyt M, LiPuma JJ, Speert DP, Govan JR, Mahenthiralingam E (2002) Burkholderia anthina sp. nov. and Burkholderia pyrrocinia, two additional Burkholderia cepacia complex bacteria, may confound results of new molecular diagnostic tools. FEMS Immunol Med Mic 33: 143-149.
82. Vandamme P, Holmes B, Coenye T, Goris J, Mahenthiralingamc E, LiPuma JJ, Govan JR (2003) Burkholderia cenocepacia sp. nov.-a new twist to an old story. Res Microbiol 154: 91-96.
83. Vermis K, Coenye T, LiPuma JJ, Mahenthiralingam E, Nelis HJ, Vandamme P (2004) Proposal to accommodate Burkholderia capecia genomovar VI as Burkholderia dolosa sp. Nov., Int J Syst Evol Micr 54: 689-691.
84. Wang Y, Wu XQ (2008) Study on several kinds of poplar canker disease and the pathogenicity of the pathogens in north of Jiangsu. J Nanjing Forestry Univ (Natural Sciences Edition) 32: 47-50 (in Chinese).
85. Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1992) 16S ribosomal DNA amplification for phylogenetic study. J Bact 173: 697-703.
86. Welbaum G, Sturz AV, Dong Z, Nowak J (2004) Fertilizing soil microorganisms to improve productivity of agroecosystems. Crit Rev Plant Sci 23: 175-193.
87. Yabuuchi E, Kosako Y, Oyaizu H, Yano I, Hotta H, Hashimoto Y, Ezaki T, Arakawa M (1992) Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia. Microbiol Immunol 36: 1251-1275.
88. Yang W, Shen RX, Liu HX (1999) On the Sustainable Management of the Poplar Canker (Dothiorella gregaria Sacc.). J Beijing Forestry Univ 21(14): 13-17 (in Chinese).
89. Zeng DP, Chao LJ, Sun FZ, Zhao TC (1999) The ice nucleation active bacteria on poplar trees and their effects in the courses of causing freezing injury and inducing fungous canker. Scientific Silvae Sinicae 35(3): 53-57 (in Chinese).
90. Zhang LX, Xie GL (2007) Diversity and distribution of Burkholderia cepacia complex in the rhizosphere of rice and maize. FEMS Microbiol Lett 266: 231-235.