메뉴 건너뛰기




Volumn 15, Issue 7-8, 2011, Pages 483-494

A topology-preserving selection and clustering approach to multidimensional biological data

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; CELL CYCLE; CELL STRESS; GENE CLUSTER; GENE EXPRESSION; GENE STRUCTURE; GENETIC ANALYSIS; GENOME; HOST CELL; PATHOGENICITY; PRIORITY JOURNAL; TOPOLOGY PRESERVING SELECTION AND CLUSTERING;

EID: 79961238041     PISSN: 15362310     EISSN: 15578100     Source Type: Journal    
DOI: 10.1089/omi.2010.0066     Document Type: Article
Times cited : (6)

References (31)
  • 1
    • 0034730140 scopus 로고    scopus 로고
    • Singular value decomposition for genome-wide expression data processing and modeling
    • Alter, O., Brown, P.O., and Botstein, D. (2000). Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci USA 97, 10101-10106.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 10101-10106
    • Alter, O.1    Brown, P.O.2    Botstein, D.3
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc 57, 289-300.
    • (1995) J R Stat Soc , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 72549103749 scopus 로고    scopus 로고
    • Gene expression profiles of thymic neuroendocrine tumors (carcinoids) with ectopic ACTH syndrome reveal novel molecular mechanism
    • Bi, Y.F., Liu, R.X., Ye, L., Fang, H., Li, X.Y., Wang, W.Q., et al. (2009). Gene expression profiles of thymic neuroendocrine tumors (carcinoids) with ectopic ACTH syndrome reveal novel molecular mechanism. Endocr Relat Cancer 16, 1273-1282.
    • (2009) Endocr Relat Cancer , vol.16 , pp. 1273-1282
    • Bi, Y.F.1    Liu, R.X.2    Ye, L.3    Fang, H.4    Li, X.Y.5    Wang, W.Q.6
  • 6
    • 0037464588 scopus 로고    scopus 로고
    • A vision for the future of genomics research
    • DOI 10.1038/nature01626
    • Collins, F.S., Green, E.D., Guttmacher, A.E., and Guyer, M.S. (2003). A vision for the future of genomics research. Nature 422, 835-847. (Pubitemid 36520032)
    • (2003) Nature , vol.422 , Issue.6934 , pp. 835-847
    • Collins, F.S.1    Green, E.D.2    Guttmacher, A.E.3    Guyer, M.S.4
  • 8
    • 0037263812 scopus 로고    scopus 로고
    • MAPPFinder: Using Gene Ontology and GenMAPP to create a global geneexpression profile from microarray data
    • Doniger, S.W., Salomonis, N., Dahlquist, K.D., Vranizan, K., Lawlor, S.C., and Conklin, B.R. (2003). MAPPFinder: Using Gene Ontology and GenMAPP to create a global geneexpression profile from microarray data. Genome Biol 4, R7.
    • (2003) Genome Biol , vol.4
    • Doniger, S.W.1    Salomonis, N.2    Dahlquist, K.D.3    Vranizan, K.4    Lawlor, S.C.5    Conklin, B.R.6
  • 10
    • 0025418849 scopus 로고
    • Fast Fourier transforms. A tutorial review and a state of the art
    • DOI 10.1016/0165-1684(90)90158-U
    • Duhamel, P., and Vetterli, M. (1990). Fast fourier transforms: A tutorial review and a state of the art. Signal Process 19, 259-299. (Pubitemid 20684988)
    • (1990) Signal Processing , vol.19 , Issue.4 , pp. 259-299
    • Duhamel, P.1    Vetterli, M.2
  • 11
    • 62749165359 scopus 로고    scopus 로고
    • Transcriptome and proteome analyses of drug interactions with natural products
    • Fang, H., Wang, K., and Zhang, J. (2008). Transcriptome and proteome analyses of drug interactions with natural products. Curr Drug Metab 9, 1037-1047.
    • (2008) Curr Drug Metab , vol.9 , pp. 1037-1047
    • Fang, H.1    Wang, K.2    Zhang, J.3
  • 12
    • 77954911545 scopus 로고    scopus 로고
    • Transcriptome analysis of early organogenesis in human embryos
    • Fang, H., Yang, Y., Li, C., Fu, S., Yang, Z., Jin, G., et al. (2010). Transcriptome analysis of early organogenesis in human embryos. Dev Cell 19, 174-184.
    • (2010) Dev Cell , vol.19 , pp. 174-184
    • Fang, H.1    Yang, Y.2    Li, C.3    Fu, S.4    Yang, Z.5    Jin, G.6
  • 13
    • 84984996500 scopus 로고    scopus 로고
    • The Gene Ontology project in 2008
    • Gene Ontology Consortium
    • Gene Ontology Consortium. (2008). The Gene Ontology project in 2008. Nucleic Acids Res 36, D440-D444.
    • (2008) Nucleic Acids Res , vol.36
  • 15
    • 7444253428 scopus 로고    scopus 로고
    • Systems biology and new technologies enable predictive and preventative medicine
    • DOI 10.1126/science.1104635
    • Hood, L., Heath, J.R., Phelps, M.E., and Lin, B. (2004). Systems biology and new technologies enable predictive and preventative medicine. Science 306, 640-643. (Pubitemid 39440903)
    • (2004) Science , vol.306 , Issue.5696 , pp. 640-643
    • Hood, L.1    Heath, J.R.2    Phelps, M.E.3    Lin, B.4
  • 16
    • 33746892279 scopus 로고    scopus 로고
    • Functional annotation: Extracting functional and regulatory order from microarrays
    • Imbeaud, S., and Auffray, C. (2005). Functional annotation: Extracting functional and regulatory order from microarrays. Mol Syst Biol 1, 2005.
    • (2005) Mol Syst Biol , vol.1 , pp. 2005
    • Imbeaud, S.1    Auffray, C.2
  • 20
    • 52149097555 scopus 로고    scopus 로고
    • Regulatory networks define phenotypic classes of human stem cell lines
    • Muller, F.J., Laurent, L.C., Kostka, D., Ulitsky, I., Williams, R., Lu, C., et al. (2008). Regulatory networks define phenotypic classes of human stem cell lines. Nature 455, 401-405.
    • (2008) Nature , vol.455 , pp. 401-405
    • Muller, F.J.1    Laurent, L.C.2    Kostka, D.3    Ulitsky, I.4    Williams, R.5    Lu, C.6
  • 24
    • 38849177346 scopus 로고    scopus 로고
    • Probing host pathogen cross-talk by transcriptional profiling of both Mycobacterium tuberculosis and infected human dendritic cells and macrophages
    • Tailleux, L., Waddell, S.J., Pelizzola, M., Mortellaro, A., Withers, M., Tanne, A., et al. (2008). Probing host pathogen cross-talk by transcriptional profiling of both Mycobacterium tuberculosis and infected human dendritic cells and macrophages. PLoS One, 3, e1403.
    • (2008) PLoS One , vol.3
    • Tailleux, L.1    Waddell, S.J.2    Pelizzola, M.3    Mortellaro, A.4    Withers, M.5    Tanne, A.6
  • 25
    • 84902127295 scopus 로고    scopus 로고
    • Distance matrix based clustering of the self-organizing map
    • J.R. Dorronsoro, eds. Madrid, Spain, August 27-30, 2002. Lecture Notes in Computer Science
    • Vesanto, J., and Sulkava, M. (2002). Distance matrix based clustering of the self-organizing map. In Proceedings of the 12th International Conference on Artificial Neural Networks (ICANN 2002). J.R. Dorronsoro, eds. Madrid, Spain, August 27-30, 2002. Lecture Notes in Computer Science, volume 2415, pages 951-956.
    • (2002) Proceedings of the 12th International Conference on Artificial Neural Networks (ICANN 2002) , vol.2415 , pp. 951-956
    • Vesanto, J.1    Sulkava, M.2
  • 26
    • 70449577142 scopus 로고    scopus 로고
    • Converting redox signaling to apoptotic activities by stress-responsive regulators HSF1 and NRF2 in fenretinide treated cancer cells
    • Wang, K., Fang, H., Xiao, D., Zhu, X., He, M., Pan, X., et al. (2009). Converting redox signaling to apoptotic activities by stress-responsive regulators HSF1 and NRF2 in fenretinide treated cancer cells. PLoS One 4, e7538.
    • (2009) PLoS One , vol.4
    • Wang, K.1    Fang, H.2    Xiao, D.3    Zhu, X.4    He, M.5    Pan, X.6
  • 28
    • 29544432473 scopus 로고    scopus 로고
    • A hybrid SOM-SVM approach for the zebrafish gene expression analysis
    • DOI 10.1115/1.1857918
    • Wu, W., Liu, X., Xu, M., Peng, J.R., and Setiono, R. (2005). A hybrid SOM-SVM approach for the zebrafish gene expression analysis. Genomics Proteomics Bioinformatics 3, 84-93. (Pubitemid 43014132)
    • (2005) Genomics, Proteomics and Bioinformatics , vol.3 , Issue.2 , pp. 84-93
    • Wu, W.1    Liu, X.2    Xu, M.3    Peng, J.-R.4    Setiono, R.5
  • 29
    • 0037434889 scopus 로고    scopus 로고
    • Component plane presentation integrated self-organizing map for microarray data analysis
    • DOI 10.1016/S0014-5793(03)00156-X
    • Xiao, L., Wang, K., Teng, Y., and Zhang, J. (2003). Component plane presentation integrated self-organizing map for microarray data analysis. FEBS Lett 538, 117-124. (Pubitemid 36287436)
    • (2003) FEBS Letters , vol.538 , Issue.1-3 , pp. 117-124
    • Xiao, L.1    Wang, K.2    Teng, Y.3    Zhang, J.4
  • 30
    • 15244358503 scopus 로고    scopus 로고
    • Systematic discovery of regulatory motifs in human promoters and 30 UTRs by comparison of several mammals
    • DOI 10.1038/nature03441
    • Xie, X., Lu, J., Kulbokas, E.J., Golub, T.R., Mootha, V., Lindblad- Toh, K., et al. (2005). Systematic discovery of regulatory motifs in human promoters and 30 UTRs by comparison of several mammals. Nature 434, 338-345. (Pubitemid 40469170)
    • (2005) Nature , vol.434 , Issue.7031 , pp. 338-345
    • Xie, X.1    Lu, J.2    Kulbokas, E.J.3    Golub, T.R.4    Mootha, V.5    Lindblad-Toh, K.6    Lander, E.S.7    Kellis, M.8
  • 31
    • 21144441198 scopus 로고    scopus 로고
    • Systems analysis of transcriptome and proteome in retinoic acid/arsenic trioxide-induced cell differentiation/apoptosis of promyelocytic leukemia
    • Zheng, P.Z., Wang, K.K., Zhang, Q.Y., Huang, Q.H., Du, Y.Z., Zhang, Q.H., et al. (2005). Systems analysis of transcriptome and proteome in retinoic acid/arsenic trioxide-induced cell differentiation/apoptosis of promyelocytic leukemia. Proc Natl Acad Sci USA 102, 7653-7658.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 7653-7658
    • Zheng, P.Z.1    Wang, K.K.2    Zhang, Q.Y.3    Huang, Q.H.4    Du, Y.Z.5    Zhang, Q.H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.