Resistance to Soil-borne cereal mosaic virus in durum wheat is controlled by a major QTL on chromosome arm 2BS and minor loci

Theoretical and Applied Genetics

Volumn 123, Issue 4, 2011, Pages 527-544

  Maccaferri, Marco ^a   Ratti, Claudio ^a   Rubies Autonell, Concepcion ^a   Vallega, Victor ^b   Demontis, Andrea ^c   Stefanelli, Sandra ^a   Tuberosa, Roberto ^a   Sanguineti, Maria Corinna ^a  

^a UNIVERSITY OF BOLOGNA   (Italy)

^b CRA   (Italy)

^c Divisione Ricerca   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ASSOCIATION MAPPING; DURUM WHEATS; GENETIC ANALYSIS; GERMPLASMS; HEXAPLOIDS; MOSAIC VIRUS; RECOMBINANT INBRED LINES; RESISTANCE ALLELE; TETRAPLOID WHEATS; TRITICUM; VIRAL DISEASE;

AGRICULTURE; DNA SEQUENCES; GENES; PLANTS (BOTANY);

VIRUSES;

ARTICLE; CHROMOSOME MAP; CROSS BREEDING; DISEASE RESISTANCE; GENE LINKAGE DISEQUILIBRIUM; GENETIC MARKER; GENETICS; IMMUNOLOGY; MOSAIC VIRUS; PATHOGENICITY; PHENOTYPE; PLANT CHROMOSOME; PLANT DISEASE; PLANT GENE; PLANT IMMUNITY; QUANTITATIVE TRAIT LOCUS; VIROLOGY; WHEAT;

CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CROSSES, GENETIC; DISEASE RESISTANCE; GENES, PLANT; GENETIC MARKERS; LINKAGE DISEQUILIBRIUM; MOSAIC VIRUSES; PHENOTYPE; PLANT DISEASES; PLANT IMMUNITY; QUANTITATIVE TRAIT LOCI; TRITICUM;

SOIL-BORNE CEREAL MOSAIC VIRUS; TRITICUM AESTIVUM; TRITICUM TURGIDUM SUBSP. DURUM;

EID: 79961170500     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-011-1605-9     Document Type: Article

References (69)

1. Barbosa MM, Goulart LR, Prestes AM, Juliatti FC (2001) Genetic control of resistance to soil-borne wheat mosaic virus in Brazilian cultivars of Triticum aestivum L. Thell. Euphytica 122: 417-422.
2. Bass C, Hendley R, Adams MJ, Hammond-Kosack KE, Kanyuka K (2006) The Sbm1 locus conferring resistance to soil-borne cereal mosaic virus maps to a gene-rich region on 5DL in wheat. Genome 49: 1140-1148.
3. Bayles R, O'Sullivan D, Lea V, Freeman S, Budge G, Walsh K (2007) Controlling soil-borne cereal mosaic virus in the UK by developing resistant wheat cultivars. HGCA Project 2616. HGCA Crop Research News 32: Project Report no. 418.
4. Bonnefoy M, Boursereau J, Chesneau R (1994) Comportment des variétés face aux virus de la mosaique du blé et de la mosaique jaune du blé. Proceedings, Workshop on Mosaics of cereals transmitted by Polymyxa graminis Led., Blois, France, 7-8 April 1994, 57-62.
5. Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, Ramdoss Y, Buckler ES (2007) TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23: 2633-2635.
6. Breseghello F, Sorrells ME (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172: 1165-1177.
7. Budge GE, Loram J, Donovan G, Boonham N (2008a) RNA2 of Soil-borne cereal mosaic virus is detectable in plants of winter wheat grown from infected seeds. Eur J Plant Pathol 120: 97-102.
8. Budge GE, Ratti C, Rubies-Autonell C, Lockley D, Bonnefoy M, Vallega V, Pietravalle S, Henry CM (2008b) Response of UK winter wheat cultivars to Soil-borne cereal mosaic and Wheat spindle streak mosaic viruses across Europe. Eur J Plant Pathol 120: 259-272.
9. Canova A (1966) Ricerche sulle malattie da virus delle graminaceae. III Polymyxa graminis Led. vettore del mosaico del frumento. Phytopatol Medit 5: 53-58.
10. Chao S, Zhang W, Dubcovsky J, Sorrells M (2007) Evaluation of genetic diversity and genome-wide linkage disequilibrium among US wheat (Triticum aestivum L.) germplasm representing different market classes. Crop Sci 47: 1018-1030.
11. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
12. Clark MF, Adams AN (1977) Characteristics of the microplate method of enzyme-linked immunosorbent assay for detection of plant viruses. J Virol Meth 34: 475-483.
13. Clover G, Wright D, Henry C (1999) Occurrence of Soil-borne wheat mosaic virus (SBWMV) in the United Kingdom. Proceedings, fourth symposium of the international working group on plant viruses with fungal vectors. Monterey, USA, 5-8 October 1999, 105-108.
14. Comadran J, Thomas WT, van Eeuwijk FA, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A, Benbelkacem A, Ouabbou H, Bort J, Romagosa I, Hackett CA, Russell JR (2009) Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theor Appl Genet 119: 175-187.
15. Conley EJ, Nduati V, Gonzalez-Hernandez JL, Mesfin A, Trudeau-Spanjers M, Chao S, Lazo GR, Hummel DD, Anderson OD, Qi LL, Gill BS, Echalier B, Linkiewicz AM, Dubcovsky J, Akhunov ED, Dyorak J, Peng JH, Lapitan NLV, Pathan MS, Nguyen HT, Ma XF, Miftahudin, Gustafson JP, Greene RA, Sorrells ME, Hossain G, Kalavacharla V, Kianian SF, Sidhu K, Dijbirligi M, Gill KS, Choi DW, Fenton RD, Close TJ, McGuire PE, Qualset CO, Anderson JA (2004) A 2600-locus chromosome bin map of wheat homoeologous group 2 reveals interstitial gene-rich islands and colinearity with rice. Genetics 168: 625-637.
16. Desiderio E, Belocchi A, D'Egidio MG, Fornara M, Cecchi V, Cecchini C (2007) Semina 2007: quali varietà di frumento duro scegliere. L'Informatore Agrario 34: 5-6.
17. Diao A, Chen J, Ye R, Zheng T, Yu S, Antoniw JF, Adams MJ (1999) Complete sequence and genome properties of Chinese wheat mosaic virus, a new furovirus from China. J Gen Virol 80: 1141-1145.
18. Dubey SN, Brown CM, Hooker AL (1970) Inheritance of field reaction to soil borne wheat mosaic virus. Crop Sci 10: 93-95.
19. Ersoz ES, Yu J, Buckler ES (2007) Applications of linkage disequilibrium and association mapping in crop plants. In: Varshney RK, Tuberosa R (eds) Genomics assisted crop improvement, vol 1: genomics approaches and platforms. Springer, Dordrecht, pp 97-119.
20. Estes AP, Brakke MK (1966) Correlation of Polymyxa graminis with transmission of Soil-borne wheat mosaic virus. Virology 28: 772-774.
21. Eujayl ME, Sorrells M, Baum P, Wolters W, Powell W (2002) Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheat. Theor Appl Genet 10: 399-407.
22. Farnir F, Coppieters W, Arranz JJ, Berzi P, Cambisano N, Grisart B, Karim L, Marcq F, Moreau L, Mni M, Nezer C, Simon P, Vanmanshoven P, Wagenaar D, Georges M (2000) Extensive genome-wide linkage disequilibrium in cattle. Minimal linkage disequilibrium in human Xq25 and Xq28. Genome Res 10: 220-227.
23. Giunta F, Motzo R, Pruneddu G (2007) Trends since 1900 in the yield potential of italian-bred durum cultivars. Eur J Agro 27: 12-24.
24. Gutiérrez AG, Carabalí SJ, Giraldo OX, Martínez CP, Correa F, Prado G, Joe Tohme J, Lorieux M (2010) Identification of a rice stripe necrosis virus resistance locus and yield component QTLs using Oryza sativa × O. glaberrima introgression lines. BMC Plant Biol 10: 6. doi: 10. 1186/1471-2229-10-6.
25. Hall MD, Brown-Guedira G, Klatt A, Fritz AK (2009) Genetic analysis of resistance to soil-borne wheat mosaic virus derived from Aegilops tauschii. Euphitica 169: 169-176.
26. Heffner EL, Sorrels ME, Jannink JL (2009) Genomic selection for crop improvement. Crop Sci 49: 1-12.
27. Jesewska M (1994) Identification and some properties of wheat soil-borne mosaic virus isolated in Poland. Phytopathol Polon 8: 97-102.
28. Kanyuka K, Ward E, Adams MJ (2003) Polymyxa graminis and the cereal viruses it transmits: a research challenge. Mol Plant Pathol 4: 393-406.
29. Korzun V, Röder MS, Wendehake K, Pasqualone A, Lotti C, Ganal MW, Blanco A (1999) Integration of dinucleotide microsatellites from hexaploid bread wheat into a genetic linkage map of durum wheat. Theor Appl Genet 98: 1202-1207.
30. Kucharek TA, Walker JH (1974) The presence of and damage caused by Soil-borne wheat mosaic virus in Florida. Plant Dis Report 58: 763-765.
31. Kühne T (2009) Soil-borne viruses affecting cereals-known for long but still a threat. Virus Res 141: 174-183.
32. Maccaferri M, Sanguineti MC, Donini P, Tuberosa R (2003) Microsatellite analysis reveals a progressive widening of the genetic basis in the elite durum wheat germplasm. Theor Appl Genet 107: 783-797.
33. Maccaferri M, Sanguineti MC, Tuberosa R (2005) Analysis of linkage disequilibrium in a collection of elite durum wheat genotypes. Mol Breeding 15: 271-289.
34. Maccaferri M, Sanguineti MC, Natoli V, Araus Ortega JL, Ben Salem M, Bort J, Chenenaoui C, De Ambrogio E, Garcia del Moral L, Demontis A, El-Ahmed A, Maalouf F, Machlab H, Moragues M, Motawaj J, Nachit M, Nserallah N, Ouabbou H, Royo C, Tuberosa R (2006) A panel of elite accessions of durum wheat (Triticum durum Desf.) suitable for association mapping studies. Plant Genet Resour 4: 79-85.
35. Maccaferri M, Stefanelli S, Rotondo F, Tuberosa R, Sanguineti MC (2007) Relationships among durum wheat accessions. I. Comparative analysis of SSR, AFLP, and phenotypic data. Genome 50: 373-384.
36. Maccaferri M, Mantovani P, Tuberosa R, DeAmbrogio E, Giuliani S, Demontis A, Massi A, Sanguineti MC (2008a) A major QTL for durable leaf rust resistance widely exploited in durum wheat breeding programs maps on the distal region of chromosome arm 7BL. Theor Appl Genet 117: 1225-1240.
37. Maccaferri M, Sanguineti MC, Corneti S, Araus Ortega JL, Ben Salern M, Bort J, DeAmbrogio E, Garcia del Moral L, Demontis A, El-Ahmed A, Maalouf F, Machlab H, Martos V, Moragues M, Motawaj J, Nachit M, Nserallah N, Ouabbou H, Royo C, Slama A, Tuberosa R (2008b) Quantitative trait loci for grain yield and adaptation of durum wheat (Triticum durum Desf.) across a wide range of water availability. Genetics 178: 489-511.
38. Maccaferri M, Ratti C, Rubies-Autonell C, Tuberosa R, Demontis A, Massi A, Stefanelli S, Vallega V, Sanguineti MC (2008c) Mapping genetic factors for resistance to Soil-Borne cereal mosaic virus (SBCMV) in durum wheat. 11th international wheat genetics symposium. Brisbane, Australia. 24-29 August, 2008.
39. Mantovani P, Maccaferri M, Sanguineti MC, Tuberosa R, Catizone I, Wenzl P, Thomson B, Carling J, Kilian A (2008) An integated DArT-SSR linkage map of durum wheat. Mol Breeding 22: 629-648.
40. Marti J, Bort J, Slafer GA, Araus JL (2007) Can wheat yield be assessed by early measurements of normalized difference vegetation index? Ann Appl Biol 150: 253-257.
41. McKinney HH (1923) Investigations of the rosette disease of wheat and its control. J Agric Res 23: 771-800.
42. Merkle OG, Smith EL (1983) Inheritance of resistance to soil-borne mosaic in wheat. Crop Sci 23: 1075-1076.
43. Modawi RS, Heyne EG, Brunetta D, Willis WG (1982) Genetic studies of field reaction to wheat soil-borne mosaic virus. Plant Dis 66: 1183-1184.
44. Nakagawa M, Soga Y, Watanabe S, Gocho H, Nishio K (1959) Genetical studies on the wheat mosaic virus II. Genes affecting the inheritance of susceptibility to strains of yellow mosaic virus in varietal crosses of wheat. Jpn J Breed 9: 118-120.
45. Narasimhamoorthy B, Gill BS, Fritz AK, Nelson JC, Brown-Guedira GL (2006) Advanced backcross QTL analysis of a hard winter wheat × synthetic wheat population. Theor Appl Genet 112: 787-796.
46. Perovic D, Forster J, Devaux P, Hariri D, Guilleroux M, Kanyuka K, Lyons R, Weyen J, Feuerhelm D, Kastirr U, Sourdille P, Röder M, Ordon F (2009) Mapping and diagnostic marker development for Soil-borne cereal mosaic virus resistance in bread wheat. Mol Breed 23: 641-653.
47. Ratti C, Pisi A, Vallega V, Rubies Autonell C (2005) Molecular characterization of Italian Soil-borne cereal mosaic virus isolates. Parasitica 61: 11-16.
48. Ratti C, Rubies-Autonell C, Maccaferri M, Stefanelli S, Sanguineti MC, Vallega V (2006) Reaction of 111 cultivars of Triticum durum Desf. from some of the world's main genetic pools to soil-borne cereal mosaic virus. J Plant Dis Protect 113: 145-149.
49. Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier MH, Leroy P, Ganal MW (1998) A microsatellite map of wheat. Genetics 149: 2007-2023.
50. Rohlf FJ (1997) NTSYS-pc: Numerical Taxonomy and Multivariate Analysis System Version 2. 1. Exeter Software, Setauket, New York.
51. Rubies-Autonell C, Vallega V (1987) Observations on a mixed Soil-borne wheat mosaic virus and Wheat spindle streak mosaic virus infection in durum wheat (Triticum durum Desf.). J Phytopathol 119: 111-121.
52. Rubies-Autonell C Vallega V (1991) Studies on the development and interaction of Soil-borne wheat mosaic virus and Wheat Spindle streak mosaic virus. In Biotic interactions and soil-borne diseases, Proc. First Congress of the European Foundation of Plant Pathology, Wageningen, Netherlands (Eds. ABR Beemster, GJ Bollen, M Gerlach, MA Ruissen, B.). Schippers and A. Tempel. Elsevier Scientific Publishers, Amsterdam, pp 107-112.
53. Rubies-Autonell C, Vallega V, Ratti C (2003) Reactions of cultivars of common wheat (Triticum aestivum L.) to soilborne wheat mosaic virus in northern Italy during 1996-1997. J Plant Dis Protect 110: 332-336.
54. Rubies-Autonell C, Ratti C, Vallega V (2009) Indexed data for comparing the reaction to cereal soil-borne mosaic virus of durum wheat cultivars assayed in different seasons. In: Rush CM (ed) Proc. of the seventh symposium of the international working group on plant viruses with fungal vectors (IWGPVFV). Quedlingburg, Germany.
55. Shaalan M, Heyne EG, Sill WH (1966) Breeding wheat for resistance to soil borne wheat mosaic virus, wheat streak-mosaic virus, leaf rust, stem rust, and bunt. Phytopathology 56: 664-669.
56. Shirako Y, Suzuki N, French RC (2000) Similarity and divergence among viruses in the genus Furovirus. Virology 270: 201-208.
57. Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for breeding wheat (Triticum aestivum L.). Theor Appl Genet 109: 1105-1114.
58. Song QJ, Shi JR, Singh S, Fickus EW, Costa JM, Lewis J, Gill BS, Ward R, Cregan PB (2005) Development and mapping of microsatellite (SSR) markers in wheat. Theor Appl Genet 110: 550-560.
59. Torrance L, Koenig R (2005) Genus Furovirus. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, London, pp 1027-1032.
60. Vaïanopoulos C, Legrève A, Moreau V, Bragard C (2009) Broad-spectrum detection and quantitation methods of Soil-borne cereal mosaic virus isolates. J Virol Methods 159(2): 227-232.
61. Vallega V (2004) Soil-borne cereal mosaic. In: Lapierre H, Signoret PA (eds) Viruses, virus diseases of Poaceae (Gramineae). INRA, Paris, pp 612-613.
62. Vallega V, Rubies Autonell C (1985) Reactions of Italian Triticum durum cultivars to soilborne wheat mosaic. Plant Dis 69: 64-66.
63. Vallega V, Rubies-Autonell C, Turina M, Ratti C, Contoli S (1999) Reactions to SBWMV of durum wheat cultivars grown in northern Italy during 1995-96. J Plant Dis Protect 106: 284-290.
64. Vallega V, Rubies-Autonell C, Ratti C (2006) Resistance to accumulation of Soil-borne cereal mosaic virus in eight cultivars of Triticum durum Desf. Parasitica 62: 79-96.
65. ® 4, Software for the calculation of genetic linkage maps in experimental populations. Kyazma BV, Wageningen.
66. Varshney RK, Tuberosa R (2007) Genomics-assisted crop improvement: an overview. In: Varshney RK, Tuberosa R (eds) Genomics assisted crop improvement, vol. 1: genomics approaches and platforms. Springer, Dordrecht, pp 1-12.
67. Walker SL, Leath S, Murphy JP, Lommel SA (1998) Selection for resistance and tolerance to oat mosaic virus and oat golden stripe virus in hexaploid oats. Plant Dis 82: 423-427.
68. Weir BS (1996) Genetic data analysis II. Sinauer Associates, Sunderland.
69. Zadoks JC, Chang TT, Konzak CF (1974) A decimal code for the growth stages of cereals. Weed Res 14: 415-421.