메뉴 건너뛰기




Volumn 101, Issue 1, 2011, Pages 66-72

Identification of methylated genes in BALB/c mice liver using monoclonal antibody combined with the high-throughput cDNA microarray approach

Author keywords

DNA methylation; Epigenetics; Imprinting; Microarray

Indexed keywords

MUS;

EID: 79961106763     PISSN: 00113891     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (4)

References (39)
  • 1
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: provocative insights from epigenomics
    • Suzuki, M. and Bird, A., DNA methylation landscapes: provocative insights from epigenomics. Nature Rev. Genet., 2008, 9, 465-476.
    • (2008) Nature Rev. Genet. , vol.9 , pp. 465-476
    • Suzuki, M.1    Bird, A.2
  • 2
    • 70349329406 scopus 로고    scopus 로고
    • Epigenetic asymmetry in the zygote and mammalian development
    • Feil, R., Epigenetic asymmetry in the zygote and mammalian development. Int. J. Dev. Biol., 2009, 53, 191-201.
    • (2009) Int. J. Dev. Biol. , vol.53 , pp. 191-201
    • Feil, R.1
  • 4
    • 0022540321 scopus 로고
    • CpG-rich islands and the function of DNA methylation
    • Bird, A., CpG-rich islands and the function of DNA methylation. Nature, 1986, 321, 209-213.
    • (1986) Nature , vol.321 , pp. 209-213
    • Bird, A.1
  • 5
    • 0022000776 scopus 로고
    • A fraction of the mouse genome that is derived from islands of nonmethylated
    • Bird, A., Taggart, M., Frommer, M., Miller, O. J. and Macleod, D., A fraction of the mouse genome that is derived from islands of nonmethylated, CpG-rich DNA. Cell, 1985, 40, 91-99.
    • (1985) CpG-rich DNA. Cell , vol.40 , pp. 91-99
    • Bird, A.1    Taggart, M.2    Frommer, M.3    Miller, O.J.4    Macleod, D.5
  • 6
    • 34250188803 scopus 로고    scopus 로고
    • Genomic patterns of DNA methyllation: targets and function of an epigenetic mark
    • Weber, M. and Schübeler, D., Genomic patterns of DNA methyllation: targets and function of an epigenetic mark. Curr. Opin. Cell Biol., 2007, 19, 273-280.
    • (2007) Curr. Opin. Cell Biol. , vol.19 , pp. 273-280
    • Weber, M.1    Schübeler, D.2
  • 7
    • 45549096818 scopus 로고    scopus 로고
    • Interindividual variation of DNA methylation and its implications for large-scale epigenome mapping
    • Bock, C., Walter, J., Paulsen, M. and Lengauer, T., Interindividual variation of DNA methylation and its implications for large-scale epigenome mapping. Nucleic Acids Res., 2008, 36(10), e55.
    • (2008) Nucleic Acids Res , vol.36 , Issue.10
    • Bock, C.1    Walter, J.2    Paulsen, M.3    Lengauer, T.4
  • 8
    • 0037372003 scopus 로고    scopus 로고
    • Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals
    • Jaenisch, R. and Bird, A. P., Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nature Genet. (Suppl.), 2003, 33, 245-254.
    • (2003) Nature Genet. , vol.33 , Issue.SUPPL. , pp. 245-254
    • Jaenisch, R.1    Bird, A.P.2
  • 10
    • 77649240380 scopus 로고    scopus 로고
    • Widespread and tissue specific age-related DNA methylation changes in mice
    • Maegawa, S. et al., Widespread and tissue specific age-related DNA methylation changes in mice. Genome Res., 2010, 20(3), 332-340.
    • (2010) Genome Res , vol.20 , Issue.3 , pp. 332-340
    • Maegawa, S.1
  • 11
    • 37249026814 scopus 로고    scopus 로고
    • Genome-wide analysis of DNA methylation patterns
    • Zilberman, D. and Henikoff, S., Genome-wide analysis of DNA methylation patterns. Development, 2007, 134, 3959-3965.
    • (2007) Development , vol.134 , pp. 3959-3965
    • Zilberman, D.1    Henikoff, S.2
  • 12
    • 77953381898 scopus 로고    scopus 로고
    • Tackling the methylome: recent methodological advances in genome-wide methylation profiling
    • Estécio, M. H. and Issa, J. J., Tackling the methylome: recent methodological advances in genome-wide methylation profiling. Genome Med., 2009, 1, 106.
    • (2009) Genome Med , vol.1 , pp. 106
    • Estécio, M.H.1    Issa, J.J.2
  • 13
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoterspecific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • Weber, M., Davies, J. J., Wittig, D., Oakeley, E. J., Haase, M., Lam, W. L. and Schubeler, D., Chromosome-wide and promoterspecific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nature Genet., 2005, 37, 853-862.
    • (2005) Nature Genet , vol.37 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5    Lam, W.L.6    Schubeler, D.7
  • 14
    • 34047095827 scopus 로고    scopus 로고
    • The human promoter methylome
    • Zilberman, D., The human promoter methylome. Nature Genet., 2007, 39(4), 442-443.
    • (2007) Nature Genet , vol.39 , Issue.4 , pp. 442-443
    • Zilberman, D.1
  • 15
    • 31344466008 scopus 로고    scopus 로고
    • DNA methylation and gene silencing in cancer
    • Baylin, S. B., DNA methylation and gene silencing in cancer. Nature Clin-Pract. Oncol., 2005, 2, S4-S11.
    • (2005) Nature Clin-Pract. Oncol. , vol.2
    • Baylin, S.B.1
  • 16
    • 42349107016 scopus 로고    scopus 로고
    • Genome-wide promoter analysis uncovers portions of the cancer methylome
    • Hoque, M. O. et al., Genome-wide promoter analysis uncovers portions of the cancer methylome. Cancer Res., 2008, 68(8), 2661-2670.
    • (2008) Cancer Res , vol.68 , Issue.8 , pp. 2661-2670
    • Hoque, M.O.1
  • 17
    • 7544231794 scopus 로고    scopus 로고
    • Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells
    • Lorincz, M. C., Dickerson, D. R., Schmitt, M. and Groudine, M., Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells. Nature Struct. Mol. Biol., 2004, 11, 1068-1075.
    • (2004) Nature Struct. Mol. Biol. , vol.11 , pp. 1068-1075
    • Lorincz, M.C.1    Dickerson, D.R.2    Schmitt, M.3    Groudine, M.4
  • 18
    • 35948981875 scopus 로고    scopus 로고
    • Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG Island promoters
    • Shen, L. et al., Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG Island promoters. PLoS Genet., 2007, 3(10), e181.
    • (2007) PLoS Genet , vol.3 , Issue.10
    • Shen, L.1
  • 19
    • 38949212693 scopus 로고    scopus 로고
    • A novel CpG island set identifies tissuespecific methylation at developmental gene loci
    • Illingworth, R. et al., A novel CpG island set identifies tissuespecific methylation at developmental gene loci. PLoS Biol., 2007, 6(1), e22.
    • (2007) PLoS Biol , vol.6 , Issue.1
    • Illingworth, R.1
  • 20
    • 73449091851 scopus 로고    scopus 로고
    • A novel method to assess the full genome methylation profile using monoclonal antibody combined with the high throughput based microarray approach
    • Kelkar, A. and Deobagkar, D., A novel method to assess the full genome methylation profile using monoclonal antibody combined with the high throughput based microarray approach. Epigenetics, 2009, 6(4), 1-7.
    • (2009) Epigenetics , vol.6 , Issue.4 , pp. 1-7
    • Kelkar, A.1    Deobagkar, D.2
  • 21
    • 0001011248 scopus 로고
    • Isolation of high molecular weight of DNA
    • Blin, N. and Stafford, D. W., Isolation of high molecular weight of DNA. Nucleic Acids Res., 1976, 3, 2302.
    • (1976) Nucleic Acids Res , vol.3 , pp. 2302
    • Blin, N.1    Stafford, D.W.2
  • 22
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D.W., Sherman, B. T. and Lempicki, R. A., Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protoc., 2009, 4(1), 44-57.
    • (2009) Nature Protoc , vol.4 , Issue.1 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 23
    • 33846067524 scopus 로고    scopus 로고
    • PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways
    • Mi, H., Nan Guo, N., Kejariwal, A. and Thomas, P. D., PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways. Nucleic Acids Res., 2006, 35, D247-D252.
    • (2006) Nucleic Acids Res , vol.35
    • Mi, H.1    Nan Guo, N.2    Kejariwal, A.3    Thomas, P.D.4
  • 25
    • 59249107052 scopus 로고    scopus 로고
    • DNA methylation profiles in monozygotic and dizygotic twins
    • Kaminsky, Z. A. et al., DNA methylation profiles in monozygotic and dizygotic twins. Nature Genet., 2009, 41, 240-245.
    • (2009) Nature Genet , vol.41 , pp. 240-245
    • Kaminsky, Z.A.1
  • 26
    • 0037064088 scopus 로고    scopus 로고
    • A novel Dnmt3a isoform produced from an alternative promoter localizes to Euchromatin and its expression correlates with active de Novo methylation
    • Chen, T., Ueda, Y., Xie, S. and Li, E., A novel Dnmt3a isoform produced from an alternative promoter localizes to Euchromatin and its expression correlates with active de Novo methylation. J. Biol. Chem., 2002, 277(41), 38746-38754.
    • (2002) J. Biol. Chem. , vol.277 , Issue.41 , pp. 38746-38754
    • Chen, T.1    Ueda, Y.2    Xie, S.3    Li, E.4
  • 27
    • 0035171016 scopus 로고    scopus 로고
    • The imprinted gene and parent-of-origin effect database
    • Morrison, I., Paton, C. and Cleverley, S., The imprinted gene and parent-of-origin effect database. Nucleic Acids Res., 2001, 29(1), 275-276.
    • (2001) Nucleic Acids Res , vol.29 , Issue.1 , pp. 275-276
    • Morrison, I.1    Paton, C.2    Cleverley, S.3
  • 28
    • 0030026001 scopus 로고    scopus 로고
    • Requirement for Xist in X chromosome inactivation
    • Rastan, S., Brockdorff, N., Penny, G. and Sheardown, S., Requirement for Xist in X chromosome inactivation. Nature, 1996, 379, 131-137.
    • (1996) Nature , vol.379 , pp. 131-137
    • Rastan, S.1    Brockdorff, N.2    Penny, G.3    Sheardown, S.4
  • 30
    • 0033552916 scopus 로고    scopus 로고
    • Hypermethylation of the cell cycle inhibitor p15INK4b 3′-untranslated region interferes with its transcriptional regulation in primary lymphomas
    • Malumbres, M., Pérez de Castro, I., Santos, J., Fernández Piqueras, J. and Pellicer, A., Hypermethylation of the cell cycle inhibitor p15INK4b 3′-untranslated region interferes with its transcriptional regulation in primary lymphomas. Oncogene, 1999, 18(2), 385-396.
    • (1999) Oncogene , vol.18 , Issue.2 , pp. 385-396
    • Malumbres, M.1    Pérez de Castro, I.2    Santos, J.3    Fernández Piqueras, J.4    Pellicer, A.5
  • 31
    • 0036734599 scopus 로고    scopus 로고
    • Epigenetic marks by DNA methylation specific to stem, germ and somatic cells in mice
    • Shiota, K. et al., Epigenetic marks by DNA methylation specific to stem, germ and somatic cells in mice. Genes Cells, 2002, 7(9), 961-969.
    • (2002) Genes Cells , vol.7 , Issue.9 , pp. 961-969
    • Shiota, K.1
  • 32
    • 34547476585 scopus 로고    scopus 로고
    • Global comparative analysis of tissuespecific promoter CpG methylation
    • Schilling, E. and Rehli, M., Global comparative analysis of tissuespecific promoter CpG methylation. Genomics, 2007, 90(3), 314-323.
    • (2007) Genomics , vol.90 , Issue.3 , pp. 314-323
    • Schilling, E.1    Rehli, M.2
  • 33
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoterspecific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • Weber, M., Davies, J. J., Wittig, D., Oakeley, E. J., Haase, M. and Lam, W. L. and Schübeler, D., Chromosome-wide and promoterspecific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nature Genet., 2005, 37(8), 853-862.
    • (2005) Nature Genet , vol.37 , Issue.8 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5    Lam, W.L.6    Schübeler, D.7
  • 34
    • 33751505540 scopus 로고    scopus 로고
    • DNA methylation profiling of human chromosomes 6, 20 and 22
    • Eckhardt, F. et al., DNA methylation profiling of human chromosomes 6, 20 and 22. Nature Genet., 2006, 38(12), 1378-1385.
    • (2006) Nature Genet , vol.38 , Issue.12 , pp. 1378-1385
    • Eckhardt, F.1
  • 35
    • 34047116826 scopus 로고    scopus 로고
    • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    • Weber, M., Hellmann, I., Stadler, M. B., Ramos, L., Pääbo, S., Rebhan, M. and Schübeler, D., Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nature Genet., 2007, 39(4), 457-466.
    • (2007) Nature Genet , vol.39 , Issue.4 , pp. 457-466
    • Weber, M.1    Hellmann, I.2    Stadler, M.B.3    Ramos, L.4    Pääbo, S.5    Rebhan, M.6    Schübeler, D.7
  • 36
    • 36749083455 scopus 로고    scopus 로고
    • A new class of tissue-specifically methylated regions involving entire CpG islands in the mouse
    • Suzuki, M. et al., A new class of tissue-specifically methylated regions involving entire CpG islands in the mouse. Genes Cells, 2007, 12(12), 1305-1314.
    • (2007) Genes Cells , vol.12 , Issue.12 , pp. 1305-1314
    • Suzuki, M.1
  • 37
    • 0344393087 scopus 로고    scopus 로고
    • Genomic imprinting: intricacies of epigenetic regulation in clusters
    • Verona, R. I., Mann, M. R. and Bartolomei, M. S., Genomic imprinting: intricacies of epigenetic regulation in clusters. Annu. Rev. Cell Develop. Biol., 2003, 19, 237-259.
    • (2003) Annu. Rev. Cell Develop. Biol. , vol.19 , pp. 237-259
    • Verona, R.I.1    Mann, M.R.2    Bartolomei, M.S.3
  • 38
    • 18444412259 scopus 로고    scopus 로고
    • Asb4, Ata3 and Dcn are novel imprinted genes identified by high-throughput screening using RIKEN cDNA microarray
    • Mizuno, Y. et al., Asb4, Ata3 and Dcn are novel imprinted genes identified by high-throughput screening using RIKEN cDNA microarray. Biochem. Biophys. Res. Commun., 2002, 290(5), 1499-1505.
    • (2002) Biochem. Biophys. Res. Commun. , vol.290 , Issue.5 , pp. 1499-1505
    • Mizuno, Y.1
  • 39
    • 0034724647 scopus 로고    scopus 로고
    • Mit1/Lb9 and Copg2, new members of mouse imprinted genes closely linked to Peg1/Mest(1)
    • Lee, Y. J. et al., Mit1/Lb9 and Copg2, new members of mouse imprinted genes closely linked to Peg1/Mest(1). FEBS Lett., 2000, 472(2-3), 230-234.
    • (2000) FEBS Lett , vol.472 , Issue.2-3 , pp. 230-234
    • Lee, Y.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.