Pelagibacterium halotolerans gen. nov., sp. nov. and Pelagibacterium luteolum sp. nov., novel members of the family hyphomicrobiaceae

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 8, 2011, Pages 1817-1822

  Xu, Xue Wei ^a   Huo, Ying Yi ^b   Wang, Chun Sheng ^a   Oren, Aharon ^c   Cui, Heng Lin ^d   Vedler, Eve ^e   Wu, Min ^b  

^a Chongqing Institute of Geology and Mineral Resources   (China)

^b ZHEJIANG UNIVERSITY   (China)

^c HEBREW UNIVERSITY OF JERUSALEM   (Israel)

^d JIANGSU UNIVERSITY   (China)

^e UNIVERSITY OF TARTU   (Estonia)

Author keywords

[No Author keywords available]

Indexed keywords

AMOXICILLIN; AMPICILLIN; BACITRACIN; BACTERIAL RNA; CARDIOLIPIN; CATALASE; CEFOTAXIME; CEFOXITIN; CHLORAMPHENICOL; ERYTHROMYCIN; GLYCOLIPID; KANAMYCIN; NEOMYCIN; NITROFURANTOIN; NOVOBIOCIN; NYSTATIN; OXIDOREDUCTASE; PALMITIC ACID; PENICILLIN G; PHOSPHATIDYLGLYCEROL; POLYMYXIN; RIBOSOME RNA; RIFAMPICIN; STEARIC ACID; STREPTOMYCIN; TETRACYCLINE; TOBRAMYCIN; UBIQUINONE;

ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATION; ENZYME ACTIVITY; HYPHOMICROBIACEAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PELAGIBACTERIUM HALOTOLERANS; PELAGIBACTERIUM LUTEOLUM; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY;

CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; HYPHOMICROBIACEAE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER;

BACTERIA (MICROORGANISMS); DEVOSIA; HYPHOMICROBIACEAE; NEGIBACTERIA;

EID: 79961080128     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.023325-0     Document Type: Article

References (27)

1. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
2. Dong, X.-Z. & Cai, M.-Y. (2001). Determinative Manual for Routine Bacteriology. Beijing: Scientific Press.
3. Euzéby, J. P. (1997). List of Bacterial Names with Standing in Nomenclature: a folder available on the Internet. Int J Syst Bacteriol 47, 590-592. http://www.bacterio.cict.fr
4. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
5. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
6. Garrity, G. M., Bell, J. A. & Lilburn, T. (2005). Family VIII. Hyphomicrobiaceae Babudieri 1950, 589. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2C, p. 476. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
7. AL. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2C, pp. 476-494. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
8. Hwang, C. Y. & Cho, B. C. (2008). Cucumibacter marinus gen. nov., sp. nov., a marine bacterium in the family Hyphomicrobiaceae. Int J Syst Evol Microbiol 58, 1591-1597.
9. Kates, M. (1986). Techniques of Lipidology, 2nd edn. Amsterdam: Elsevier.
10. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
11. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
12. Lee, K.-B., Liu, C.-T., Anzai, Y., Kim, H., Aono, T. & Oyaizu, H. (2005). The hierarchical system of the 'Alphaproteobacteria': description of Hyphomonadaceae fam. nov., Xanthobacteraceae fam. nov. and Erythrobacteraceae fam. nov. Int J Syst Evol Microbiol 55, 1907-1919.
13. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
14. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
15. Mesbah, M. & Whitman, W. B. (1989). Measurement of deoxyguano-sine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine+cytosine of DNA. J Chromatogr A 479, 297-306.
16. Mikhailov, V. V., Romanenko, L. A. & Ivanova, E. P. (2006). The genus Alteromonas and related proteobacteria. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 6, pp. 597-645. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
17. Nakagawa, Y., Sakane, T. & Yokota, A. (1996). Transfer of ''Pseudomonas riboflavina'' (Foster 1944), a gram-negative, motile rod with long-chain 3-hydroxy fatty acids, to Devosia riboflavina gen. nov., sp. nov., nom. rev. Int J Syst Bacteriol 46, 16-22.
18. Ryu, S. H., Chung, B. S., Le, N. T., Jang, H. H., Yun, P. Y., Park, W. & Jeon, C. O. (2008). Devosia geojensis sp. nov., isolated from diesel-contaminated soil in Korea. Int J Syst Evol Microbiol 58, 633-636.
19. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406- 425.
20. VP (Effective publication: Schlesner 1987, 65). In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2C, pp. 518-520. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
21. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846- 849.
22. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
23. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
24. Truu, J., Karme, L., Talpsep, E., Heinaru, E., Vedler, E. & Heinaru, A. (2003). Phytoremediation of solid oil shale waste from the chemical industry. Acta Biotechnol 23, 301-307.
25. Xu, X.-W., Wu, Y.-H., Zhou, Z., Wang, C.-S., Zhou, Y.-G., Zhang, H.-B., Wang, Y. & Wu, M. (2007). Halomonas saccharevitans sp. nov., Halomonas arcis sp. nov. and Halomonas subterranea sp. nov., halophilic bacteria isolated from hypersaline environments of China. Int J Syst Evol Microbiol 57, 1619-1624.
26. Xu, X.-W., Wu, Y.-H., Wang, C.-S., Yang, J.-Y., Oren, A. & Wu, M. (2008). Marinobacter pelagius sp. nov., a moderately halophilic bacterium. Int J Syst Evol Microbiol 58, 637-640.
27. Xu, H.-Y., Chen, L.-P., Fu, S.-Z., Fan, H.-X., Zhou, Y.-G., Liu, S.-J. & Liu, Z.-P. (2009). Zhangella mobilis gen. nov., sp. nov., a new member of the family Hyphomicrobiaceae isolated from coastal seawater. Int J Syst Evol Microbiol 59, 2297-2301.