Suppression subtractive hybridization coupled with microarray analysis to examine differential expression of genes in Japanese flounder Paralichthys olivaceus leucocytes during Edwardsiella tarda and viral hemorrhagic septicemia virus infection

Fish and Shellfish Immunology

Volumn 31, Issue 4, 2011, Pages 524-532

  Matsuyama, Tomomasa ^a   Fujiwara, Atushi ^a   Takano, Tomokazu ^a   Nakayasu, Chihaya ^a  

^a FISHERIES RESEARCH AGENCY   (Japan)

Author keywords

Edwardsiella tarda; Microarray; Paralichthys olivaceus; Suppression subtractive hybridization (SSH); Viral hemorrhagic septicemia virus (VHSV)

Indexed keywords

BACTERIA (MICROORGANISMS); EDWARDSIELLA TARDA; PARALICHTHYS OLIVACEUS; PLEURONECTOIDEI; VIRAL HEMORRHAGIC SEPTICEMIA VIRUS;

EID: 79961025558     PISSN: 10504648     EISSN: 10959947     Source Type: Journal    
DOI: 10.1016/j.fsi.2011.06.015     Document Type: Article

References (33)

1. Iwama G., Nakanishi T. The fish immune system. Organism, pathogen, and environment 1996, Academic Press, USA, p. 380.
2. Staudt L.M., Brown P.O. Genomic views of the immune system. Annu Rev Immunol 2000, 8:829-859.
3. Diatchenko L., Lau Y.F., Campbell A.P., Chenchik A., Moqadam F., Huang B., et al. Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc Natl Acad Sci U S A 1996, 93:6025-6030.
4. Dios S., Poisa-Beiro L., Figueras A., Novoa B. Suppression subtraction hybridization (SSH) and macroarray techniques reveal differential gene expression profiles in brain of sea bream infected with nodavirus. Mol Immunol 2007, 44:2195-2204.
5. MacKenzie S., Balasch J.C., Novoa B., Ribas L., Roher N., Krasnov A., et al. Comparative analysis of the acute response of the trout, O. mykiss, head kidney to in vivo challenge with virulent and attenuated infectious hematopoietic necrosis virus and LPS-induced inflammation. BMC Genomics 2008, 9:141.
6. Aoki T., Hirono I., Kim M.G., Katagiri T., Tokuda Y., Toyohara H., et al. Identification of viral induced genes in Ig+ leucocytes of Japanese flounder Paralichthys olivaceus, by differential hybridisation with subtracted and un-subtracted cDNA probes. Fish Shellfish Immunol 2000, 10:623-630.
7. Byon J.Y., Ohira T., Hirono I., Aoki T. Use of cDNA microarray to study immunity against viral hemorrhagic septicemia (VHS) in Japanese flounder (Paralichthys olivaceus) following DNA vaccination. Fish Shellfish Immunol 2005, 18:135-147.
8. Emmadi D., Iwahori A., Hirono I., Aoki T. cDNA microarray analysis of interleukin-1beta-induced Japanese flounder Paralichthys olivaceus kidney cells. Fish Sci 2005, 71:519-530.
9. Kurobe T., Yasuike M., Kimura T., Hirono I., Aoki T. Expression profiling of immune-related genes from Japanese flounder Paralichthys olivaceus kidney cells using cDNA microarrays. Dev Comp Immunol 2005, 29:515-523.
10. Byon J.Y., Ohira T., Hirono I., Aoki T. Comparative immune responses in Japanese flounder, Paralichthys olivaceus after vaccination with viral hemorrhagic septicemia virus (VHSV) recombinant glycoprotein and DNA vaccine using a microarray analysis. Vaccine 2006, 24:921-930.
11. Matsuyama T., Fujiwara A., Nakayasu C., Kamaishi T., Oseko N., Hirono I., et al. Gene expression of leucocytes in vaccinated Japanese flounder (Paralichthys olivaceus) during the course of experimental infection with Edwardsiella tarda. Fish Shellfish Immunol 2007, 22:598-607.
12. Matsuyama T., Fujiwara A., Nakayasu C., Kamaishi T., Oseko N., Tsutsumi N., et al. Microarray analyses of gene expression in Japanese flounder Paralichthys olivaceus leucocytes during monogenean parasite Neoheterobothrium hirame infection. Dis Aquat Org 2007, 75:79-83.
13. Yasuike M., Kondo H., Hirono I., Aoki T. Difference in Japanese flounder, Paralichthys olivaceus gene expression profile following hirame rhabdovirus (HIRRV) G and N protein DNA vaccination. Fish Shellfish Immunol 2007, 23:531-541.
14. Isshiki T., Nishizawa T., Kobayashi T., Nagano T., Miyazaki T. An outbreak of VHSV (viral hemorrhagic septicemia virus) infection in farmed Japanese flounder Paralichthys olivaceus in Japan. Dis Aquat Org 2001, 47:87-99.
15. Nakatsugawa T. Edwardsiella tarda isolated from cultured young flounder. Fish Pathol 1983, 18:99-101. (in Japanese with English abstract).
16. Kanai K., Tawaki S., Uchida Y. An ecological study of Edwardsiella tarda in flounder farm. Fish Pathol 1988, 23:41-47.
17. Kusuda R., Salati F. Major bacterial diseases affecting mariculture in Japan. Annu Rev Fish Dis 1993, 3:69-85.
18. Feldmann H., Geisbert T.W., Jahrling P.B., Klenk H.D., Netesov S.V., Peters C.J., et al. Family Rhabdoviridae. Virus taxonomy: eighth report of the International Committee on taxonomy of viruses 2005, 623-653. Elsevier/Academic Press, London, United Kingdom. C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Eds.).
19. Isshiki T., Nagano T., Miyazaki T. Effect of water temperature on pathological states of Japanese flounder experimentally infected with viral hemorrhagic septicemia virus, an flounder isolate KRRV-9601. Fish Pathol 2002, 37:95-97.
20. Miyazaki T., Kaige N. Comparative histopathology of Edwardsiellosis in fishes. Fish Pathol 1985, 20:219-227.
21. Einer-Jensen K., Winton J., Lorenzen N. Genotyping of the fish rhabdovirus, viral haemorrhagic septicaemia virus by restriction fragment length polymorphism. Vet Microbiol 2005, 106:167-178.
22. Yang I. Use of external controls in microarray experiments. Methods Enzymol 2006, 411:50-63.
23. Conesa A., Götz S., García-Gómez J.M., Terol J., Talón M., Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676.
24. Tafalla C., Figueras A., Novoa B. In vitro interaction of viral haemorrhagic septicaemia virus and leukocytes from trout (Oncorhynchus mykiss) and turbot (Scophthalmus maximus). Vet Immunol Immunopathol 1998, 62:359-366.
25. Drolet B.S., Rohovec J.S., Leong J.C. The route of entry and progression of infectious hematopoietic necrosis virus in Oncorhynchus mykiss (Walbaum) - a sequential immunohistochemical study. J Fish Dis 1994, 1994(17):337-347.
26. Tanaka K. Role of proteasomes modified by interferon-gamma in antigen processing. J Leukoc Biol 1994, 56:571-575.
27. Yabu T., Hirose H., Hirono I., Katagiri T., Aoki T., Yamamoto E. Molecular cloning of a novel interferon regulatory factor in Japanese flounder, Paralichthys olivaceus. Mol Mar Biol Biotechnol 1998, 7:138-144.
28. Cheng S., Hu Y.H., Zhang M., Sun L. Analysis of the vaccine potential of a natural avirulent Edwardsiella tarda isolate. Vaccine 2010, 28:2716-2721.
29. Takano T., Matsuyama T., Oseko N., Sakai S., Kamaishi T., Nakayasu C., et al. Comparison of live vaccine potential between five avirulent Edwardsiella tarda against Edwardsiellosis of Japanese Flounder. Fish Shellfish Immunol 2010, 29:687-693.
30. Moser B., Wolf M., Walz A., Loetscher P. Chemokines: multiple levels of leukocyte migration control. Trends Immunol 2004, 25:75-84.
31. Montero J., Chaves-Pozo E., Cuesta A., Tafalla C. Chemokine transcription in rainbow trout (Oncorhynchus mykiss) is differently modulated in response to viral hemorrhagic septicaemia virus (VHSV) or infectious pancreatic necrosis virus (IPNV). Fish Shellfish Immunol 2009, 27:661-669.
32. Springer T.A. Traffic signals for lymphocyte recirculation and leukocyte emigration: the multistep paradigm. Cell 1994, 76:301-314.
33. Ley K., Laudanna C., Cybulsky M.I., Nourshargh S. Getting to the site of inflammation: the leukocyte adhesion cascade updated. Nat Rev Immunol 2007, 7:678-689.