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Volumn 6, Issue 7, 2011, Pages

Impact of protein stability, cellular localization, and abundance on proteomic detection of Tumor-Derived proteins in plasma

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; DIPEPTIDE; TUMOR PROTEIN; ANTINEOPLASTIC AGENT; PLASMA PROTEIN; PROTEOME; TUMOR MARKER;

EID: 79960927847     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0023090     Document Type: Article
Times cited : (14)

References (23)
  • 1
    • 0001644020 scopus 로고    scopus 로고
    • The human plasma proteome: history, character, and diagnostic prospects
    • Anderson NL, Anderson NG, (2002) The human plasma proteome: history, character, and diagnostic prospects. Mol Cell Proteomics 1: 845-867.
    • (2002) Mol Cell Proteomics , vol.1 , pp. 845-867
    • Anderson, N.L.1    Anderson, N.G.2
  • 2
    • 41649100689 scopus 로고    scopus 로고
    • Mining the plasma proteome for cancer biomarkers
    • Hanash SM, Pitteri SJ, Faca VM, (2008) Mining the plasma proteome for cancer biomarkers. Nature 452: 571-579.
    • (2008) Nature , vol.452 , pp. 571-579
    • Hanash, S.M.1    Pitteri, S.J.2    Faca, V.M.3
  • 3
    • 70349759769 scopus 로고    scopus 로고
    • Mass spectrometry-based biomarker discovery: toward a global proteome index of individuality
    • Hawkridge AM, Muddiman DC, (2009) Mass spectrometry-based biomarker discovery: toward a global proteome index of individuality. Annu Rev Anal Chem (Palo Alto Calif) 2: 265-277.
    • (2009) Annu Rev Anal Chem (Palo Alto Calif) , vol.2 , pp. 265-277
    • Hawkridge, A.M.1    Muddiman, D.C.2
  • 4
    • 59149084542 scopus 로고    scopus 로고
    • Targeted proteomic strategy for clinical biomarker discovery
    • Schiess R, Wollscheid B, Aebersold R, (2009) Targeted proteomic strategy for clinical biomarker discovery. Mol Oncol 3: 33-44.
    • (2009) Mol Oncol , vol.3 , pp. 33-44
    • Schiess, R.1    Wollscheid, B.2    Aebersold, R.3
  • 5
    • 35648931589 scopus 로고    scopus 로고
    • Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer
    • Whiteaker JR, Zhang H, Zhao L, Wang P, Kelly-Spratt KS, et al. (2007) Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer. J Proteome Res 6: 3962-3975.
    • (2007) J Proteome Res , vol.6 , pp. 3962-3975
    • Whiteaker, J.R.1    Zhang, H.2    Zhao, L.3    Wang, P.4    Kelly-Spratt, K.S.5
  • 6
    • 85128759053 scopus 로고    scopus 로고
    • A list of candidate cancer biomarkers for targeted proteomics
    • Polanski M, Anderson NL, (2007) A list of candidate cancer biomarkers for targeted proteomics. Biomark Insights 1: 1-48.
    • (2007) Biomark Insights , vol.1 , pp. 1-48
    • Polanski, M.1    Anderson, N.L.2
  • 7
    • 0038825777 scopus 로고    scopus 로고
    • Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice
    • Creighton C, Kuick R, Misek DE, Rickman DS, Brichory FM, et al. (2003) Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice. Genome Biol 4: R46.
    • (2003) Genome Biol , vol.4
    • Creighton, C.1    Kuick, R.2    Misek, D.E.3    Rickman, D.S.4    Brichory, F.M.5
  • 8
    • 50949125606 scopus 로고    scopus 로고
    • Cancer screening: a mathematical model relating secreted blood biomarker levels to tumor sizes
    • Lutz AM, Willmann JK, Cochran FV, Ray P, Gambhir SS, (2008) Cancer screening: a mathematical model relating secreted blood biomarker levels to tumor sizes. PLoS Med 5: e170.
    • (2008) PLoS Med , vol.5
    • Lutz, A.M.1    Willmann, J.K.2    Cochran, F.V.3    Ray, P.4    Gambhir, S.S.5
  • 9
    • 27644543078 scopus 로고    scopus 로고
    • Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics
    • Old W, Meyer-Arendt K, Aveline-Wolf L, Pierce K, Mendoza A, et al. (2005) Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics. Mol Cell Proteomics 4: 1487-1502.
    • (2005) Mol Cell Proteomics , vol.4 , pp. 1487-1502
    • Old, W.1    Meyer-Arendt, K.2    Aveline-Wolf, L.3    Pierce, K.4    Mendoza, A.5
  • 10
    • 33747158479 scopus 로고    scopus 로고
    • Quantitative analysis of acrylamide labeled serum proteins by LC-MS/MS
    • Faca V, Coram M, Phanstiel D, Glukhova V, Zhang Q, et al. (2006) Quantitative analysis of acrylamide labeled serum proteins by LC-MS/MS. J Proteome Res 5: 2009-2018.
    • (2006) J Proteome Res , vol.5 , pp. 2009-2018
    • Faca, V.1    Coram, M.2    Phanstiel, D.3    Glukhova, V.4    Zhang, Q.5
  • 11
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller A, Nesvizhskii AI, Kolker E, Aebersold R, (2002) Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem 74: 5383-5392.
    • (2002) Anal Chem , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 12
    • 0025612425 scopus 로고
    • Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence
    • Guruprasad K, Reddy BV, Pandit MW, (1990) Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence. Protein Eng 4: 155-161.
    • (1990) Protein Eng , vol.4 , pp. 155-161
    • Guruprasad, K.1    Reddy, B.V.2    Pandit, M.W.3
  • 13
    • 0036713833 scopus 로고    scopus 로고
    • Combining several screening tests: optimality of the risk score
    • McIntosh MW, Pepe MS, (2002) Combining several screening tests: optimality of the risk score. Biometrics 58: 657-664.
    • (2002) Biometrics , vol.58 , pp. 657-664
    • McIntosh, M.W.1    Pepe, M.S.2
  • 14
    • 33845572150 scopus 로고    scopus 로고
    • Human body fluid proteome analysis
    • Hu S, Loo JA, Wong DT, (2006) Human body fluid proteome analysis. Proteomics 6: 6326-6353.
    • (2006) Proteomics , vol.6 , pp. 6326-6353
    • Hu, S.1    Loo, J.A.2    Wong, D.T.3
  • 15
    • 60549108191 scopus 로고    scopus 로고
    • Proteomic approaches in lung cancer biomarker development
    • Cho JY, Sung HJ, (2009) Proteomic approaches in lung cancer biomarker development. Expert Rev Proteomics 6: 27-42.
    • (2009) Expert Rev Proteomics , vol.6 , pp. 27-42
    • Cho, J.Y.1    Sung, H.J.2
  • 16
    • 0142244518 scopus 로고    scopus 로고
    • Profiling of the cell surface proteome
    • Jang JH, Hanash S, (2003) Profiling of the cell surface proteome. Proteomics 3: 1947-1954.
    • (2003) Proteomics , vol.3 , pp. 1947-1954
    • Jang, J.H.1    Hanash, S.2
  • 17
    • 34948876373 scopus 로고    scopus 로고
    • Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes
    • Faca V, Pitteri SJ, Newcomb L, Glukhova V, Phanstiel D, et al. (2007) Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes. J Proteome Res 6: 3558-3565.
    • (2007) J Proteome Res , vol.6 , pp. 3558-3565
    • Faca, V.1    Pitteri, S.J.2    Newcomb, L.3    Glukhova, V.4    Phanstiel, D.5
  • 18
    • 46349104324 scopus 로고    scopus 로고
    • A mouse to human search for plasma proteome changes associated with pancreatic tumor development
    • Faca VM, Song KS, Wang H, Zhang Q, Krasnoselsky AL, et al. (2008) A mouse to human search for plasma proteome changes associated with pancreatic tumor development. PLoS Med 5: e123.
    • (2008) PLoS Med , vol.5
    • Faca, V.M.1    Song, K.S.2    Wang, H.3    Zhang, Q.4    Krasnoselsky, A.L.5
  • 19
    • 20844461912 scopus 로고    scopus 로고
    • Intact-protein-based high-resolution three-dimensional quantitative analysis system for proteome profiling of biological fluids
    • Wang H, Clouthier SG, Galchev V, Misek DE, Duffner U, et al. (2005) Intact-protein-based high-resolution three-dimensional quantitative analysis system for proteome profiling of biological fluids. Mol Cell Proteomics 4: 618-625.
    • (2005) Mol Cell Proteomics , vol.4 , pp. 618-625
    • Wang, H.1    Clouthier, S.G.2    Galchev, V.3    Misek, D.E.4    Duffner, U.5
  • 20
    • 45549102800 scopus 로고    scopus 로고
    • Plasma proteome profiling of a mouse model of breast cancer identifies a set of up-regulated proteins in common with human breast cancer cells
    • Pitteri SJ, Faca VM, Kelly-Spratt KS, Kasarda AE, Wang H, et al. (2008) Plasma proteome profiling of a mouse model of breast cancer identifies a set of up-regulated proteins in common with human breast cancer cells. J Proteome Res 7: 1481-1489.
    • (2008) J Proteome Res , vol.7 , pp. 1481-1489
    • Pitteri, S.J.1    Faca, V.M.2    Kelly-Spratt, K.S.3    Kasarda, A.E.4    Wang, H.5
  • 21
    • 30744438115 scopus 로고    scopus 로고
    • Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments
    • Rauch A, Bellew M, Eng J, Fitzgibbon M, Holzman T, et al. (2006) Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments. J Proteome Res 5: 112-121.
    • (2006) J Proteome Res , vol.5 , pp. 112-121
    • Rauch, A.1    Bellew, M.2    Eng, J.3    Fitzgibbon, M.4    Holzman, T.5
  • 22
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii AI, Keller A, Kolker E, Aebersold R, (2003) A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem 75: 4646-4658.
    • (2003) Anal Chem , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 23
    • 77955237507 scopus 로고    scopus 로고
    • Brain-specific proteins decline in the cerebrospinal fluid of humans with Huntington's disease
    • Fang Q, Strand A, Law W, Faca VM, Fitzgibbon MP, et al. (2008) Brain-specific proteins decline in the cerebrospinal fluid of humans with Huntington's disease. Mol Cell Proteomics.
    • (2008) Mol Cell Proteomics
    • Fang, Q.1    Strand, A.2    Law, W.3    Faca, V.M.4    Fitzgibbon, M.P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.