-
1
-
-
33847070442
-
The role of chromatin during transcription
-
Li B, Carey M, Workman JL, (2007) The role of chromatin during transcription. Cell 128: 707-719.
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
2
-
-
65549130132
-
Targeting histone deacetylases for the treatment of immune, endocrine & metabolic disorders
-
less MW, Norris S, O'yrne KJ, Gray SG, (2009) Targeting histone deacetylases for the treatment of immune, endocrine & metabolic disorders. Endocr Metab Immune Disord Drug Targets 9: 84-107.
-
(2009)
Endocr Metab Immune Disord Drug Targets
, vol.9
, pp. 84-107
-
-
less, M.W.1
Norris, S.2
O'yrne, K.J.3
Gray, S.G.4
-
3
-
-
24944496184
-
Role of histone and transcription factor acetylation in diabetes pathogenesis
-
Gray SG, De Meyts P, (2005) Role of histone and transcription factor acetylation in diabetes pathogenesis. Diabetes Metab Res Rev 21: 416-433.
-
(2005)
Diabetes Metab Res Rev
, vol.21
, pp. 416-433
-
-
Gray, S.G.1
De Meyts, P.2
-
4
-
-
43749098795
-
Modifying the epigenome as a therapeutic strategy in myelodysplasia
-
Garcia-Manero G, (2007) Modifying the epigenome as a therapeutic strategy in myelodysplasia. Hematology Am Soc Hematol Educ Program pp. 405-411.
-
(2007)
Hematology Am Soc Hematol Educ Program
, pp. 405-411
-
-
Garcia-Manero, G.1
-
5
-
-
43149119233
-
Chromatin-remodelling mechanisms in cancer
-
Lafon-Hughes L, Di Tomaso MV, Mendez-Acuna L, Martinez-Lopez W, (2008) Chromatin-remodelling mechanisms in cancer. Mutat Res 658: 191-214.
-
(2008)
Mutat Res
, vol.658
, pp. 191-214
-
-
Lafon-Hughes, L.1
Di Tomaso, M.V.2
Mendez-Acuna, L.3
Martinez-Lopez, W.4
-
6
-
-
50249091120
-
Chemical regulation of epigenetic modifications: opportunities for new cancer therapy
-
Zheng YG, Wu J, Chen Z, Goodman M, (2008) Chemical regulation of epigenetic modifications: opportunities for new cancer therapy. Med Res Rev 28: 645-687.
-
(2008)
Med Res Rev
, vol.28
, pp. 645-687
-
-
Zheng, Y.G.1
Wu, J.2
Chen, Z.3
Goodman, M.4
-
7
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl BD, Allis CD, (2000) The language of covalent histone modifications. Nature 403: 41-45.
-
(2000)
Nature
, vol.403
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
8
-
-
0035839136
-
Translating the histone code
-
Jenuwein T, Allis CD, (2001) Translating the histone code. Science 293: 1074-1080.
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
9
-
-
70149112313
-
Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation
-
Zippo A, Serafini R, Rocchigiani M, Pennacchini S, Krepelova A, et al. (2009) Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation. Cell 138: 1122-1136.
-
(2009)
Cell
, vol.138
, pp. 1122-1136
-
-
Zippo, A.1
Serafini, R.2
Rocchigiani, M.3
Pennacchini, S.4
Krepelova, A.5
-
10
-
-
1242316281
-
ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
-
Buck MJ, Lieb JD, (2004) ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. Genomics 83: 349-360.
-
(2004)
Genomics
, vol.83
, pp. 349-360
-
-
Buck, M.J.1
Lieb, J.D.2
-
11
-
-
33748753680
-
Statistical assessment of the global regulatory role of histone acetylation in Saccharomyces cerevisiae
-
Yuan GC, Ma P, Zhong W, Liu JS, (2006) Statistical assessment of the global regulatory role of histone acetylation in Saccharomyces cerevisiae. Genome Biol 7: R70.
-
(2006)
Genome Biol
, vol.7
-
-
Yuan, G.C.1
Ma, P.2
Zhong, W.3
Liu, J.S.4
-
12
-
-
54249099196
-
Species-specific transcription in mice carrying human chromosome 21
-
Wilson MD, Barbosa-Morais NL, Schmidt D, Conboy CM, Vanes L, et al. (2008) Species-specific transcription in mice carrying human chromosome 21. Science 322: 434-438.
-
(2008)
Science
, vol.322
, pp. 434-438
-
-
Wilson, M.D.1
Barbosa-Morais, N.L.2
Schmidt, D.3
Conboy, C.M.4
Vanes, L.5
-
13
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431: 99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
-
14
-
-
2942518343
-
Mapping global histone acetylation patterns to gene expression
-
Kurdistani SK, Tavazoie S, Grunstein M, (2004) Mapping global histone acetylation patterns to gene expression. Cell 117: 721-733.
-
(2004)
Cell
, vol.117
, pp. 721-733
-
-
Kurdistani, S.K.1
Tavazoie, S.2
Grunstein, M.3
-
15
-
-
8444245244
-
Global nucleosome occupancy in yeast
-
Bernstein BE, Liu CL, Humphrey EL, Perlstein EO, Schreiber SL, (2004) Global nucleosome occupancy in yeast. Genome Biol 5: R62.
-
(2004)
Genome Biol
, vol.5
-
-
Bernstein, B.E.1
Liu, C.L.2
Humphrey, E.L.3
Perlstein, E.O.4
Schreiber, S.L.5
-
16
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
17
-
-
55249124329
-
Transcriptional response according to strength of calorie restriction in Saccharomyces cerevisiae
-
Lee YL, Lee CK, (2008) Transcriptional response according to strength of calorie restriction in Saccharomyces cerevisiae. Mol Cells 26: 299-307.
-
(2008)
Mol Cells
, vol.26
, pp. 299-307
-
-
Lee, Y.L.1
Lee, C.K.2
-
18
-
-
37349024107
-
Modeling the regulatory network of histone acetylation in Saccharomyces cerevisiae
-
Pham H, Ferrari R, Cokus SJ, Kurdistani SK, Pellegrini M, (2007) Modeling the regulatory network of histone acetylation in Saccharomyces cerevisiae. Mol Syst Biol 3: 153.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 153
-
-
Pham, H.1
Ferrari, R.2
Cokus, S.J.3
Kurdistani, S.K.4
Pellegrini, M.5
-
19
-
-
0018267877
-
The histone core complex: an octamer assembled by two sets of protein-protein interactions
-
Eickbush TH, Moudrianakis EN, (1978) The histone core complex: an octamer assembled by two sets of protein-protein interactions. Biochemistry 17: 4955-4964.
-
(1978)
Biochemistry
, vol.17
, pp. 4955-4964
-
-
Eickbush, T.H.1
Moudrianakis, E.N.2
-
20
-
-
34548583274
-
A tutorial on spectral clustering
-
Von Luxburg U, (2007) A tutorial on spectral clustering. Statistics and Computing 17: 1-32.
-
(2007)
Statistics and Computing
, vol.17
, pp. 1-32
-
-
Von Luxburg, U.1
-
21
-
-
24944472983
-
Clustering on the Unit Hypersphere using von Mises-Fisher Distributions
-
Banerjee A, Dhillon IS, Ghosh J, Sra S, (2005) Clustering on the Unit Hypersphere using von Mises-Fisher Distributions. J Mach Learn Res 6: 1-39.
-
(2005)
J Mach Learn Res
, vol.6
, pp. 1-39
-
-
Banerjee, A.1
Dhillon, I.S.2
Ghosh, J.3
Sra, S.4
-
22
-
-
22544432531
-
Noise-robust soft clustering of gene expression time-course data
-
Futschik ME, Carlisle B, (2005) Noise-robust soft clustering of gene expression time-course data. J Bioinform Comput Biol 3: 965-988.
-
(2005)
J Bioinform Comput Biol
, vol.3
, pp. 965-988
-
-
Futschik, M.E.1
Carlisle, B.2
-
23
-
-
9144257282
-
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
-
Ruepp A, Zollner A, Maier D, Albermann K, Hani J, et al. (2004) The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res 32: 5539-5545.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5539-5545
-
-
Ruepp, A.1
Zollner, A.2
Maier, D.3
Albermann, K.4
Hani, J.5
-
24
-
-
34547875013
-
NAD+-dependent deacetylation of H4 lysine 16 by class III HDACs
-
Vaquero A, Sternglanz R, Reinberg D, (2007) NAD+-dependent deacetylation of H4 lysine 16 by class III HDACs. Oncogene 26: 5505-5520.
-
(2007)
Oncogene
, vol.26
, pp. 5505-5520
-
-
Vaquero, A.1
Sternglanz, R.2
Reinberg, D.3
-
25
-
-
0345687947
-
Multi-level response of the yeast genome to glucose
-
Gelade R, Van de Velde S, Van Dijck P, Thevelein JM, (2003) Multi-level response of the yeast genome to glucose. Genome Biol 4: 233.
-
(2003)
Genome Biol
, vol.4
, pp. 233
-
-
Gelade, R.1
van de Velde, S.2
van Dijck, P.3
Thevelein, J.M.4
-
26
-
-
84984933073
-
Structure and function of a transcriptional network activated by the MAPK Hog1
-
Capaldi AP, Kaplan T, Liu Y, Habib N, Regev A, et al. (2008) Structure and function of a transcriptional network activated by the MAPK Hog1. Nat Genet 40: 1300-1306.
-
(2008)
Nat Genet
, vol.40
, pp. 1300-1306
-
-
Capaldi, A.P.1
Kaplan, T.2
Liu, Y.3
Habib, N.4
Regev, A.5
-
27
-
-
0037389961
-
Transcription of genes encoding trans-acting factors required for rRNA maturation/ribosomal subunit assembly is coordinately regulated with ribosomal protein genes and involves Rap1 in Saccharomyces cerevisiae
-
Miyoshi K, Shirai C, Mizuta K, (2003) Transcription of genes encoding trans-acting factors required for rRNA maturation/ribosomal subunit assembly is coordinately regulated with ribosomal protein genes and involves Rap1 in Saccharomyces cerevisiae. Nucleic Acids Res 31: 1969-1973.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1969-1973
-
-
Miyoshi, K.1
Shirai, C.2
Mizuta, K.3
-
28
-
-
0038349351
-
Glucose triggers different global responses in yeast, depending on the strength of the signal, and transiently stabilizes ribosomal protein mRNAs
-
Yin Z, Wilson S, Hauser NC, Tournu H, Hoheisel JD, et al. (2003) Glucose triggers different global responses in yeast, depending on the strength of the signal, and transiently stabilizes ribosomal protein mRNAs. Mol Microbiol 48: 713-724.
-
(2003)
Mol Microbiol
, vol.48
, pp. 713-724
-
-
Yin, Z.1
Wilson, S.2
Hauser, N.C.3
Tournu, H.4
Hoheisel, J.D.5
-
29
-
-
11144273952
-
TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1
-
Martin DE, Soulard A, Hall MN, (2004) TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1. Cell 119: 969-979.
-
(2004)
Cell
, vol.119
, pp. 969-979
-
-
Martin, D.E.1
Soulard, A.2
Hall, M.N.3
-
30
-
-
0032584196
-
ESA1 is a histone acetyltransferase that is essential for growth in yeast
-
Smith ER, Eisen A, Gu W, Sattah M, Pannuti A, et al. (1998) ESA1 is a histone acetyltransferase that is essential for growth in yeast. Proc Natl Acad Sci U S A 95: 3561-3565.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 3561-3565
-
-
Smith, E.R.1
Eisen, A.2
Gu, W.3
Sattah, M.4
Pannuti, A.5
-
31
-
-
0032965152
-
Esa1p is an essential histone acetyltransferase required for cell cycle progression
-
Clarke AS, Lowell JE, Jacobson SJ, Pillus L, (1999) Esa1p is an essential histone acetyltransferase required for cell cycle progression. Mol Cell Biol 19: 2515-2526.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 2515-2526
-
-
Clarke, A.S.1
Lowell, J.E.2
Jacobson, S.J.3
Pillus, L.4
-
32
-
-
45149109211
-
Catalytic-site mutations in the MYST family histone Acetyltransferase Esa1
-
Decker PV, Yu DY, Iizuka M, Qiu Q, Smith MM, (2008) Catalytic-site mutations in the MYST family histone Acetyltransferase Esa1. Genetics 178: 1209-1220.
-
(2008)
Genetics
, vol.178
, pp. 1209-1220
-
-
Decker, P.V.1
Yu, D.Y.2
Iizuka, M.3
Qiu, Q.4
Smith, M.M.5
-
33
-
-
0034839973
-
Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin
-
Suka N, Suka Y, Carmen AA, Wu J, Grunstein M, (2001) Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin. Mol Cell 8: 473-479.
-
(2001)
Mol Cell
, vol.8
, pp. 473-479
-
-
Suka, N.1
Suka, Y.2
Carmen, A.A.3
Wu, J.4
Grunstein, M.5
-
34
-
-
0037179692
-
Acetylation of histone H4 by Esa1 is required for DNA double-strand break repair
-
Bird AW, Yu DY, Pray-Grant MG, Qiu Q, Harmon KE, et al. (2002) Acetylation of histone H4 by Esa1 is required for DNA double-strand break repair. Nature 419: 411-415.
-
(2002)
Nature
, vol.419
, pp. 411-415
-
-
Bird, A.W.1
Yu, D.Y.2
Pray-Grant, M.G.3
Qiu, Q.4
Harmon, K.E.5
-
35
-
-
32544456936
-
Histone acetylation and transcriptional regulation in the genome of Saccharomyces cerevisiae
-
Guo X, Tatsuoka K, Liu R, (2006) Histone acetylation and transcriptional regulation in the genome of Saccharomyces cerevisiae. Bioinformatics 22: 392-399.
-
(2006)
Bioinformatics
, vol.22
, pp. 392-399
-
-
Guo, X.1
Tatsuoka, K.2
Liu, R.3
|