-
1
-
-
0018879196
-
Codon catalog usage and the genome hypothesis
-
Grantham R, Gautier C, Gouy M, Mercier R, Pave A, (1980a) Codon catalog usage and the genome hypothesis. Nucleic Acids Res 8: R49-R62.
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 49-62
-
-
Grantham, R.1
Gautier, C.2
Gouy, M.3
Mercier, R.4
Pave, A.5
-
2
-
-
0019188794
-
Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type
-
Grantham R, Gautier C, Gouy M, (1980b) Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type. Nucleic Acids Res 8: 1893-1912.
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 1893-1912
-
-
Grantham, R.1
Gautier, C.2
Gouy, M.3
-
3
-
-
0019824131
-
Correlation between the abundance of Escherichia coli transfer RNAs and the occurance of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E.coli translational system
-
Ikemura T, (1981) Correlation between the abundance of Escherichia coli transfer RNAs and the occurance of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E.coli translational system. J Mol Biol 151: 389-409.
-
(1981)
J Mol Biol
, vol.151
, pp. 389-409
-
-
Ikemura, T.1
-
4
-
-
0021958933
-
Codon usage and tRNA content in unicellular and multicellular organisms
-
Ikemura T, (1985) Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol 2: 13-34.
-
(1985)
Mol Biol Evol
, vol.2
, pp. 13-34
-
-
Ikemura, T.1
-
5
-
-
0022856787
-
An evolutionary perspective on synonymous codon usage in unicellular organisms
-
Sharp PM, Li WH, (1986) An evolutionary perspective on synonymous codon usage in unicellular organisms. J Mol Evol 24: 28-38.
-
(1986)
J Mol Evol
, vol.24
, pp. 28-38
-
-
Sharp, P.M.1
Li, W.H.2
-
6
-
-
14544277543
-
Variation in the strength of selected codon usage bias among bacteria
-
Sharp PM, Bailes E, Grocock RJ, Peden JF, Sockett RE, (2005) Variation in the strength of selected codon usage bias among bacteria. Nucleic Acids Res 33: 1141-1153.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1141-1153
-
-
Sharp, P.M.1
Bailes, E.2
Grocock, R.J.3
Peden, J.F.4
Sockett, R.E.5
-
7
-
-
77951570815
-
Forces that influence the evolution of codon bias
-
Sharp PM, Emery LR, Zeng K, (2010) Forces that influence the evolution of codon bias. Phil Trans R Soc B 365: 1203-1212.
-
(2010)
Phil Trans R Soc B
, vol.365
, pp. 1203-1212
-
-
Sharp, P.M.1
Emery, L.R.2
Zeng, K.3
-
8
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
Bulmer M, (1991) The selection-mutation-drift theory of synonymous codon usage. Genetics 129: 897-907.
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.1
-
9
-
-
0027715731
-
Codon usage: mutational bias, translational selection, or both?
-
Sharp PM, Stenico M, Peden JF, Lloyd AT, (1993) Codon usage: mutational bias, translational selection, or both? Biochem Soc Trans 21: 835-841.
-
(1993)
Biochem Soc Trans
, vol.21
, pp. 835-841
-
-
Sharp, P.M.1
Stenico, M.2
Peden, J.F.3
Lloyd, A.T.4
-
10
-
-
0035220937
-
A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
-
research0010.1-researc0010.13
-
Knight RD, Freeland SJ, Landweber LF, (2001) A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes. Genome Biol 2: research0010.1-0010.13.
-
(2001)
Genome Biol
, vol.2
-
-
Knight, R.D.1
Freeland, S.J.2
Landweber, L.F.3
-
11
-
-
1542618322
-
Codon usage between genomes is constrained by genome-wide mutational processes
-
Chen SL, Lee W, Hottes AK, Shapiro L, McAdams HH, (2004) Codon usage between genomes is constrained by genome-wide mutational processes. Proc Natl Acad Sci U S A 101: 3480-3485.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 3480-3485
-
-
Chen, S.L.1
Lee, W.2
Hottes, A.K.3
Shapiro, L.4
McAdams, H.H.5
-
12
-
-
8744310123
-
Codon usage bias from tRNA's point of view: redundancy, specialization, and decoding for translation optimization
-
Rocha EPC, (2004) Codon usage bias from tRNA's point of view: redundancy, specialization, and decoding for translation optimization. Genome Res 14: 2279-2286.
-
(2004)
Genome Res
, vol.14
, pp. 2279-2286
-
-
Rocha, E.P.C.1
-
13
-
-
54149105223
-
Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage
-
Higgs PG, Ran W, (2008) Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage. Mol Biol Evol 25: 2279-2291.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 2279-2291
-
-
Higgs, P.G.1
Ran, W.2
-
14
-
-
77955955750
-
The influence of anticodon-codon interactions and modified bases on codon usage bias in bacteria
-
Ran W, Higgs PG, (2010) The influence of anticodon-codon interactions and modified bases on codon usage bias in bacteria. Mol Biol Evol 27: 2129-2140.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2129-2140
-
-
Ran, W.1
Higgs, P.G.2
-
15
-
-
78650304100
-
Synonymous but not the same: the causes and consequences of codon bias
-
Plotkin JB, Kudla G, (2011) Synonymous but not the same: the causes and consequences of codon bias. Nature Rev Genetics 12: 32-42.
-
(2011)
Nature Rev Genetics
, vol.12
, pp. 32-42
-
-
Plotkin, J.B.1
Kudla, G.2
-
16
-
-
0028359705
-
Codon usage in Caenorhabditis elegans - delineation of translational selection and mutational biases
-
Stenico M, Lloyd AT, Sharp PM, (1994) Codon usage in Caenorhabditis elegans - delineation of translational selection and mutational biases. Nucleic Acids Res 22: 2437-2446.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 2437-2446
-
-
Stenico, M.1
Lloyd, A.T.2
Sharp, P.M.3
-
17
-
-
0028797897
-
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
-
Akashi H, (1995) Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139: 1067-1076.
-
(1995)
Genetics
, vol.139
, pp. 1067-1076
-
-
Akashi, H.1
-
18
-
-
0030903283
-
Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila
-
Akashi H, Schaeffer SW, (1997) Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila. Genetics 146: 295-307.
-
(1997)
Genetics
, vol.146
, pp. 295-307
-
-
Akashi, H.1
Schaeffer, S.W.2
-
19
-
-
0025318864
-
The 'effective number of codons' used in a gene
-
Wright F, (1990) The 'effective number of codons' used in a gene. Gene 87: 23-29.
-
(1990)
Gene
, vol.87
, pp. 23-29
-
-
Wright, F.1
-
20
-
-
0036667702
-
Accounting for background nucleotide composition when measuring codon usage bias
-
Novembre JA, (2002) Accounting for background nucleotide composition when measuring codon usage bias. Mol Biol Evol 19: 1390-1394.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1390-1394
-
-
Novembre, J.A.1
-
21
-
-
68249114427
-
General rules for optimal codon choice
-
doi: 10.1371/journal.pgen.1000556
-
Hershberg R, Petrov DA, (2009) General rules for optimal codon choice. Plos Genet 5: e1000556 doi:10.1371/journal.pgen.1000556.
-
(2009)
Plos Genet
, vol.5
-
-
Hershberg, R.1
Petrov, D.A.2
-
22
-
-
0024962419
-
Rates of aminoacyl-tRNA selection at 29 sense codons in vivo
-
Curran JF, Yarus M, (1989) Rates of aminoacyl-tRNA selection at 29 sense codons in vivo. J Mol Biol 209: 65-77.
-
(1989)
J Mol Biol
, vol.209
, pp. 65-77
-
-
Curran, J.F.1
Yarus, M.2
|