Assessing the effects of acetochlor on soil fungal communities by DGGE and clone library analysis

Ecotoxicology

Volumn 19, Issue 6, 2010, Pages 1111-1116

  Xin Yu, Li ^a   Zhen Cheng, Su ^a   Xu, Li ^a   Cheng Gang, Zhang ^a   Hui Wen, Zhang ^a  

^a INSTITUTE OF APPLIED ECOLOGY   (China)

Author keywords

Acetochlor; Clone sequencing; DGGE; Fungal community

Indexed keywords

ACETOCHLOR; RNA 28S; HERBICIDE; SOIL POLLUTANT; TOLUIDINE DERIVATIVE;

CLUSTER ANALYSIS; COMMUNITY STRUCTURE; CONCENTRATION (COMPOSITION); DISEASE SPREAD; ECOTOXICOLOGY; EXPERIMENTAL STUDY; FUNGUS; GENETIC STRUCTURE; HERBICIDE; MICROCOSM; PATHOGENICITY; RISK ASSESSMENT; SOIL BIOTA; SOIL POLLUTION;

ARTICLE; CLUSTER ANALYSIS; CONCENTRATION RESPONSE; CONTROLLED STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA EXTRACTION; ECOTOXICOLOGY; FUNGAL COMMUNITY; GENE AMPLIFICATION; GENE SEQUENCE; MICROBIAL DIVERSITY; MICROCOSM; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RISK ASSESSMENT; SOIL ANALYSIS; DRUG EFFECTS; FUNGUS; GENE LIBRARY; GENETICS; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; MOLECULAR GENETICS; PHARMACOLOGY; PHYLOGENY; SOIL POLLUTANT;

FUNGI; GENE LIBRARY; HERBICIDES; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 28S; SOIL MICROBIOLOGY; SOIL POLLUTANTS; TOLUIDINES;

EID: 79960856473     PISSN: 09639292     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10646-010-0493-0     Document Type: Article

References (28)

1. Bamborough L, Cummings SP (2009) The impact of increasing heavy metal stress on the diversity and structure of the bacterial and actinobacterial communities of metallophytic grassland soil. Biol Fertil Soils 45:273-280
2. Bassam BJ, Caetano-Anollés G (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 196:80-83
3. Borneman J, Hartin RJ (2000) PCR primers that amplify fungal rRNA genes from environmental samples. Appl Environ Microbiol 66:4356-4360
4. Cai XY, Sheng GY, Liu WP (2007) Degradation and detoxification of acetochlor in soils treated by organic and thiosulfate amendments. Chemosphere 66:286-292
5. Calbrix R, Barray S, Chabrerie O, Fourrie L, Laval K (2007) Impact of organic amendments on the dynamics of soil microbial biomass and bacterial communities in cultivated land. Appl Soil Ecol 35:511-522
6. Chen WC, Yen JH, Chang CS, Wang YS (2009) Effects of herbicide butachlor on soil microorganisms and on nitrogen-fixing abilities in paddy soil. Ecotoxicol Environ Safe 72:120-127
7. Dang HY, Li J, Chen MN, Li TG, Zeng ZG, Yin XB (2008) Finescale vertical distribution of bacteria in the East Pacific deep-sea sediments determined via 16S rRNA gene T-RFLP and clone library analyses. World J Microbiol Biotechnol 25:179-188
8. Feng HM, He HB, Bai Z, Wu YY, Guo BD, Zhang M, Zhang XD (2008) Microbial degradation of acetochlor in mollisol and the effects of acetochlor on the characteristics of soil phospholipids fatty acids. Chin J Appl Ecol 19:158-1590
9. Guo XH, Qiao YH, Zhao J, Sun ZJ (2009) Indication and response of soil microbe to acetochlor. Chin J EcoAgric 17:960-963
10. Hu XX (1998) Current situation and developing direction of pesticide industry in China. Pesticides 37:7-10
11. Jonsen K, Jacobsen CS, Torsvik V (2001) Pesticide effects on bacterial diversity in agricultural soils-a review. Biol Fertil Soils 33:443-453
12. Luo HF, Qi HY, Zhang HX (2004) The impact of acetochlor on the bacterial diversity in soil. Acta Microbiol Sin 44:519-522
13. Miletto M, Bodelier PLE, Laanbroek HJ (2007) Improved PCR-DGGE for high resolution diversity screening of complex sulfate-reducing prokaryotic communities in soils and sediments. J Microbiol Methods 70:103-111
14. Nelson DR, Mele PM (2007) Subtle changes in rhizosphere microbial community structure in response to increased boron and sodium chloride concentrations. Soil Biol Biochem 39:340-351
15. Ranjard L, Poly F, Lata JC, Mougel C, Thioulouse J, Nazaret S (2001) Characterisation of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability. Appl Environ Microbiol 67:4479-4487
16. Ros M, Pascual JA, Hernández MT, García C (2009) Long-term effects of devegetation on composition and activities (including transcription) of fungal communities of a semi-arid soil. Biol Fertil Soils 45:435-441
17. Sandhu GS, Kline BC, Stockman L, Roberts GD (1995) Molecular probes for the diagnosis of fungal infections. J Clin Microbiol 33:2913-2919
18. Shannon CE, Weaver W (1963) The mathematical theory of communication. University of Illinois Press, Urbana, p144
19. Su ZC, Zhang HW, Li XY, Zhang Q, Zhang CG (2007) Toxic effects of acetochlor, methamidophos and their combination on nifH gene in soil. J Environ Sci 19:864-873
20. Toberman H, Freeman C, Evans C, Fenner N, Artz RRE (2008) Summer drought decreases soil fungal diversity and associated phenol oxidase activity in upland Calluna heathland soil. FEMS Microbiol Ecol 66:426-436
21. Valinsky L, Della VG, Jiang T, Borneman J (2002) Oligonucleotide fingerprinting of rRNA genes for analysis of fungal community composition. Appl Environ Microbiol 68:5999-6004 (Pubitemid 36342433)
22. Xiao NW, Jing BB, Ge F, Liu XH (2006) The fate of herbicide acetochlor and its toxicity to Eisenia fetida under laboratory conditions. Chemosphere 62:1366-1373
23. Yu JL, Zhao DY, Liu BH, Lin XC, Jiang BG (1998) Residue analysis of acetochlor in soybean and soil. Pesticides 37:28-30
24. Yu JL, Song GC, Wang LC, Cao DQ, Yu YC (2000) Study on the effects of acetochlor on soil microbe. Tech Equip Environ Pollut Control 1:61-65
25. Zhang HW, Zhou QX, Zhang QR, Zhang CG (2004) Toxic effects of acetochlor, methamidophos and their combination on bacterial amount and population richness at molecular levels in agricultural black soils. Environ Sci 25:142-148
26. Zhang QR, Zhou QX, Zhang HW, Cheng XS (2004) Joint effects of acetochlor and Cu2+ on indigenous bacterial communities in phaeozem. Acta Sci Circumstantiae 24:326-332
27. Zheng HH, Ye CM (2001) The transferability of acetochlor and butachlor in soil. Environ Sci 22:117-121
28. Zhou JZ, Bruns MA, Tiedje JM (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62:316-322