-
1
-
-
59549100623
-
Distribution and population of free-living cells related to endosymbiont A harbored in Oligobrachia mashikoi (a siboglinid polychaete) inhabiting Tsukumo bay
-
Aida M, Kanemori M, Kubota N, Matada M, Sasayama Y & Fukomari Y (2008) Distribution and population of free-living cells related to endosymbiont A harbored in Oligobrachia mashikoi (a siboglinid polychaete) inhabiting Tsukumo bay. Microbes Environ 23: 81-88.
-
(2008)
Microbes Environ
, vol.23
, pp. 81-88
-
-
Aida, M.1
Kanemori, M.2
Kubota, N.3
Matada, M.4
Sasayama, Y.5
Fukomari, Y.6
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW & Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
33745256005
-
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
-
Anisimova M & Gascuel O (2006) Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst Biol 55: 539-552.
-
(2006)
Syst Biol
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
4
-
-
33748799671
-
New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
-
Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ &Weightman AJ (2006) New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl Environ Microb 72: 5734-5741.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 5734-5741
-
-
Ashelford, K.E.1
Chuzhanova, N.A.2
Fry, J.C.3
Jones, A.J.4
Weightman, A.J.5
-
5
-
-
77955302385
-
Molecular characterization of the symbionts associated with marine nematodes of the genus Robbea
-
Bayer C, Heindl NR, Rinke C, Lücker S, Ott JA & Bulgheresi S (2009) Molecular characterization of the symbionts associated with marine nematodes of the genus Robbea. Environ Microbiol Rep 1: 136-144.
-
(2009)
Environ Microbiol Rep
, vol.1
, pp. 136-144
-
-
Bayer, C.1
Heindl, N.R.2
Rinke, C.3
Lücker, S.4
Ott, J.A.5
Bulgheresi, S.6
-
6
-
-
79956266648
-
Sequence variability of the pattern recognition receptor Mermaid mediates specificity of marine nematode symbioses
-
Bulgheresi S, Gruber-Vodicka HR, Heindl NR, Dirks U, Kostadinova M, Breiteneder H & Ott JA (2011) Sequence variability of the pattern recognition receptor Mermaid mediates specificity of marine nematode symbioses. ISME J. http://dx.doi.org/10.1038/ismej.2010.198.
-
(2011)
ISME J
-
-
Bulgheresi, S.1
Gruber-Vodicka, H.R.2
Heindl, N.R.3
Dirks, U.4
Kostadinova, M.5
Breiteneder, H.6
Ott, J.A.7
-
7
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
-
8
-
-
48249102000
-
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
-
Dereeper A, Guignon V, Blanc G et al. (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36: W465-W469.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Dereeper, A.1
Guignon, V.2
Blanc, G.3
-
10
-
-
0342960381
-
Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm
-
Dubilier N, Mulders C, Ferdelman T et al. (2001) Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm. Nature 411: 298-302.
-
(2001)
Nature
, vol.411
, pp. 298-302
-
-
Dubilier, N.1
Mulders, C.2
Ferdelman, T.3
-
11
-
-
52049111640
-
Symbiotic diversity in marine animals: the art of harnessing chemosynthesis
-
Dubilier N, Bergin C & Lott C (2008) Symbiotic diversity in marine animals: the art of harnessing chemosynthesis. Nat Rev Microbiol 6: 725-740.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 725-740
-
-
Dubilier, N.1
Bergin, C.2
Lott, C.3
-
12
-
-
0000717590
-
Structural organisation, transfer and biological fate of endosymbiotic bacteria in gutless oligochaetes
-
Giere O & Langheld C (1987) Structural organisation, transfer and biological fate of endosymbiotic bacteria in gutless oligochaetes. Mar Biol 93: 641-650.
-
(1987)
Mar Biol
, vol.93
, pp. 641-650
-
-
Giere, O.1
Langheld, C.2
-
13
-
-
0142136093
-
Detection of the free-living forms of sulfide-oxidizing gill endosymbionts in the lucinid habitat (Thalassia testudinum environment)
-
Gros O, Liberge M, Heddi A, Khatchadourian C & Felbeck H (2003) Detection of the free-living forms of sulfide-oxidizing gill endosymbionts in the lucinid habitat (Thalassia testudinum environment). Appl Environ Microb 69: 6264-6267.
-
(2003)
Appl Environ Microb
, vol.69
, pp. 6264-6267
-
-
Gros, O.1
Liberge, M.2
Heddi, A.3
Khatchadourian, C.4
Felbeck, H.5
-
14
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S & Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
15
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W & Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.-F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
16
-
-
45749097885
-
Free-living tube worm endosymbionts found at deep-sea vents
-
Harmer TL, Rotjan RD, Nussbaumer AD, Bright M, Ng AW, DeChaine EG & Cavanaugh CM (2008) Free-living tube worm endosymbionts found at deep-sea vents. Appl Environ Microb 74: 3895-3898.
-
(2008)
Appl Environ Microb
, vol.74
, pp. 3895-3898
-
-
Harmer, T.L.1
Rotjan, R.D.2
Nussbaumer, A.D.3
Bright, M.4
Ng, A.W.5
DeChaine, E.G.6
Cavanaugh, C.M.7
-
17
-
-
0032147190
-
Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations
-
Juretschko S, Timmermann G, Schmid M, Schleifer KH, Pommerening-Roser A, Koops HP & Wagner M (1998) Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Appl Environ Microb 64: 3042-3051.
-
(1998)
Appl Environ Microb
, vol.64
, pp. 3042-3051
-
-
Juretschko, S.1
Timmermann, G.2
Schmid, M.3
Schleifer, K.H.4
Pommerening-Roser, A.5
Koops, H.P.6
Wagner, M.7
-
18
-
-
0027460327
-
Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences
-
Kane MD, Poulsen LK & Stahl DA (1993) Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences. Appl Environ Microb 59: 682-686.
-
(1993)
Appl Environ Microb
, vol.59
, pp. 682-686
-
-
Kane, M.D.1
Poulsen, L.K.2
Stahl, D.A.3
-
19
-
-
51649116822
-
probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity
-
Loy A, Arnold R, Tischler P, Rattei T, Wagner M & Horn M (2008) probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity. Environ Microbiol 10: 2894-2898.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2894-2898
-
-
Loy, A.1
Arnold, R.2
Tischler, P.3
Rattei, T.4
Wagner, M.5
Horn, M.6
-
20
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W, Strunk O, Westram R et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
-
21
-
-
34248167658
-
Molecular and morphological characterization of the association between bacterial endosymbionts and the marine nematode Astomonema sp. from the Bahamas
-
Musat N, Giere O, Gieseke A, Thiermann F, Amann R & Dubilier N (2007)Molecular and morphological characterization of the association between bacterial endosymbionts and the marine nematode Astomonema sp. from the Bahamas. Environ Microbiol 9: 1345-1353.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1345-1353
-
-
Musat, N.1
Giere, O.2
Gieseke, A.3
Thiermann, F.4
Amann, R.5
Dubilier, N.6
-
22
-
-
33744967961
-
Horizontal endosymbiont transmission in hydrothermal vent tubeworms
-
Nussbaumer AD, Fisher CR & Bright M (2006) Horizontal endosymbiont transmission in hydrothermal vent tubeworms. Nature 441: 345-348.
-
(2006)
Nature
, vol.441
, pp. 345-348
-
-
Nussbaumer, A.D.1
Fisher, C.R.2
Bright, M.3
-
23
-
-
2542427835
-
Symbioses between marine nematodes and sulfur-oxidizing chemoautotrophic bacteria
-
Ott JA, Bright M & Bulgheresi S (2004a) Symbioses between marine nematodes and sulfur-oxidizing chemoautotrophic bacteria. Symbiosis 36: 103-126.
-
(2004)
Symbiosis
, vol.36
, pp. 103-126
-
-
Ott, J.A.1
Bright, M.2
Bulgheresi, S.3
-
25
-
-
69549129476
-
The 'rare biosphere': a reality check
-
Reeder J & Knight R (2009) The 'rare biosphere': a reality check. Nat Methods 6: 636-637.
-
(2009)
Nat Methods
, vol.6
, pp. 636-637
-
-
Reeder, J.1
Knight, R.2
|