메뉴 건너뛰기




Volumn 77, Issue 1, 2011, Pages 223-227

First detection of thiotrophic symbiont phylotypes in the pelagic marine environment

Author keywords

Gammaproteobacteria; Nematode; Pelagic; Sulfur oxidizing bacteria; Symbiosis; Thiotrophic

Indexed keywords

RNA 16S; SEA WATER;

EID: 79960822363     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2011.01096.x     Document Type: Article
Times cited : (10)

References (25)
  • 1
    • 59549100623 scopus 로고    scopus 로고
    • Distribution and population of free-living cells related to endosymbiont A harbored in Oligobrachia mashikoi (a siboglinid polychaete) inhabiting Tsukumo bay
    • Aida M, Kanemori M, Kubota N, Matada M, Sasayama Y & Fukomari Y (2008) Distribution and population of free-living cells related to endosymbiont A harbored in Oligobrachia mashikoi (a siboglinid polychaete) inhabiting Tsukumo bay. Microbes Environ 23: 81-88.
    • (2008) Microbes Environ , vol.23 , pp. 81-88
    • Aida, M.1    Kanemori, M.2    Kubota, N.3    Matada, M.4    Sasayama, Y.5    Fukomari, Y.6
  • 3
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
    • Anisimova M & Gascuel O (2006) Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst Biol 55: 539-552.
    • (2006) Syst Biol , vol.55 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 4
    • 33748799671 scopus 로고    scopus 로고
    • New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
    • Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ &Weightman AJ (2006) New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl Environ Microb 72: 5734-5741.
    • (2006) Appl Environ Microb , vol.72 , pp. 5734-5741
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Jones, A.J.4    Weightman, A.J.5
  • 5
    • 77955302385 scopus 로고    scopus 로고
    • Molecular characterization of the symbionts associated with marine nematodes of the genus Robbea
    • Bayer C, Heindl NR, Rinke C, Lücker S, Ott JA & Bulgheresi S (2009) Molecular characterization of the symbionts associated with marine nematodes of the genus Robbea. Environ Microbiol Rep 1: 136-144.
    • (2009) Environ Microbiol Rep , vol.1 , pp. 136-144
    • Bayer, C.1    Heindl, N.R.2    Rinke, C.3    Lücker, S.4    Ott, J.A.5    Bulgheresi, S.6
  • 6
    • 79956266648 scopus 로고    scopus 로고
    • Sequence variability of the pattern recognition receptor Mermaid mediates specificity of marine nematode symbioses
    • Bulgheresi S, Gruber-Vodicka HR, Heindl NR, Dirks U, Kostadinova M, Breiteneder H & Ott JA (2011) Sequence variability of the pattern recognition receptor Mermaid mediates specificity of marine nematode symbioses. ISME J. http://dx.doi.org/10.1038/ismej.2010.198.
    • (2011) ISME J
    • Bulgheresi, S.1    Gruber-Vodicka, H.R.2    Heindl, N.R.3    Dirks, U.4    Kostadinova, M.5    Breiteneder, H.6    Ott, J.A.7
  • 7
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
    • Cole JR, Wang Q, Cardenas E et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
    • (2009) Nucleic Acids Res , vol.37
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3
  • 8
    • 48249102000 scopus 로고    scopus 로고
    • Phylogeny.fr: robust phylogenetic analysis for the non-specialist
    • Dereeper A, Guignon V, Blanc G et al. (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36: W465-W469.
    • (2008) Nucleic Acids Res , vol.36
    • Dereeper, A.1    Guignon, V.2    Blanc, G.3
  • 10
    • 0342960381 scopus 로고    scopus 로고
    • Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm
    • Dubilier N, Mulders C, Ferdelman T et al. (2001) Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm. Nature 411: 298-302.
    • (2001) Nature , vol.411 , pp. 298-302
    • Dubilier, N.1    Mulders, C.2    Ferdelman, T.3
  • 11
    • 52049111640 scopus 로고    scopus 로고
    • Symbiotic diversity in marine animals: the art of harnessing chemosynthesis
    • Dubilier N, Bergin C & Lott C (2008) Symbiotic diversity in marine animals: the art of harnessing chemosynthesis. Nat Rev Microbiol 6: 725-740.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 725-740
    • Dubilier, N.1    Bergin, C.2    Lott, C.3
  • 12
    • 0000717590 scopus 로고
    • Structural organisation, transfer and biological fate of endosymbiotic bacteria in gutless oligochaetes
    • Giere O & Langheld C (1987) Structural organisation, transfer and biological fate of endosymbiotic bacteria in gutless oligochaetes. Mar Biol 93: 641-650.
    • (1987) Mar Biol , vol.93 , pp. 641-650
    • Giere, O.1    Langheld, C.2
  • 13
    • 0142136093 scopus 로고    scopus 로고
    • Detection of the free-living forms of sulfide-oxidizing gill endosymbionts in the lucinid habitat (Thalassia testudinum environment)
    • Gros O, Liberge M, Heddi A, Khatchadourian C & Felbeck H (2003) Detection of the free-living forms of sulfide-oxidizing gill endosymbionts in the lucinid habitat (Thalassia testudinum environment). Appl Environ Microb 69: 6264-6267.
    • (2003) Appl Environ Microb , vol.69 , pp. 6264-6267
    • Gros, O.1    Liberge, M.2    Heddi, A.3    Khatchadourian, C.4    Felbeck, H.5
  • 14
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S & Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 15
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W & Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.-F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 17
    • 0032147190 scopus 로고    scopus 로고
    • Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations
    • Juretschko S, Timmermann G, Schmid M, Schleifer KH, Pommerening-Roser A, Koops HP & Wagner M (1998) Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Appl Environ Microb 64: 3042-3051.
    • (1998) Appl Environ Microb , vol.64 , pp. 3042-3051
    • Juretschko, S.1    Timmermann, G.2    Schmid, M.3    Schleifer, K.H.4    Pommerening-Roser, A.5    Koops, H.P.6    Wagner, M.7
  • 18
    • 0027460327 scopus 로고
    • Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences
    • Kane MD, Poulsen LK & Stahl DA (1993) Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences. Appl Environ Microb 59: 682-686.
    • (1993) Appl Environ Microb , vol.59 , pp. 682-686
    • Kane, M.D.1    Poulsen, L.K.2    Stahl, D.A.3
  • 19
    • 51649116822 scopus 로고    scopus 로고
    • probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity
    • Loy A, Arnold R, Tischler P, Rattei T, Wagner M & Horn M (2008) probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity. Environ Microbiol 10: 2894-2898.
    • (2008) Environ Microbiol , vol.10 , pp. 2894-2898
    • Loy, A.1    Arnold, R.2    Tischler, P.3    Rattei, T.4    Wagner, M.5    Horn, M.6
  • 20
    • 2542523843 scopus 로고    scopus 로고
    • ARB: a software environment for sequence data
    • Ludwig W, Strunk O, Westram R et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1363-1371
    • Ludwig, W.1    Strunk, O.2    Westram, R.3
  • 21
    • 34248167658 scopus 로고    scopus 로고
    • Molecular and morphological characterization of the association between bacterial endosymbionts and the marine nematode Astomonema sp. from the Bahamas
    • Musat N, Giere O, Gieseke A, Thiermann F, Amann R & Dubilier N (2007)Molecular and morphological characterization of the association between bacterial endosymbionts and the marine nematode Astomonema sp. from the Bahamas. Environ Microbiol 9: 1345-1353.
    • (2007) Environ Microbiol , vol.9 , pp. 1345-1353
    • Musat, N.1    Giere, O.2    Gieseke, A.3    Thiermann, F.4    Amann, R.5    Dubilier, N.6
  • 22
    • 33744967961 scopus 로고    scopus 로고
    • Horizontal endosymbiont transmission in hydrothermal vent tubeworms
    • Nussbaumer AD, Fisher CR & Bright M (2006) Horizontal endosymbiont transmission in hydrothermal vent tubeworms. Nature 441: 345-348.
    • (2006) Nature , vol.441 , pp. 345-348
    • Nussbaumer, A.D.1    Fisher, C.R.2    Bright, M.3
  • 23
    • 2542427835 scopus 로고    scopus 로고
    • Symbioses between marine nematodes and sulfur-oxidizing chemoautotrophic bacteria
    • Ott JA, Bright M & Bulgheresi S (2004a) Symbioses between marine nematodes and sulfur-oxidizing chemoautotrophic bacteria. Symbiosis 36: 103-126.
    • (2004) Symbiosis , vol.36 , pp. 103-126
    • Ott, J.A.1    Bright, M.2    Bulgheresi, S.3
  • 24
  • 25
    • 69549129476 scopus 로고    scopus 로고
    • The 'rare biosphere': a reality check
    • Reeder J & Knight R (2009) The 'rare biosphere': a reality check. Nat Methods 6: 636-637.
    • (2009) Nat Methods , vol.6 , pp. 636-637
    • Reeder, J.1    Knight, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.