Isolation of Plant Transcription Factors Using a Yeast One-Hybrid System

Methods in Molecular Biology

Volumn 754, Issue , 2011, Pages 45-66

  Pyvovarenko, Tatiana ^a   Lopato, Sergiy ^a  

^a UNIVERSITY OF ADELAIDE   (Australia)

Author keywords

barley; cDNA libraries; cis elements; maize; transcription factors; wheat; Yeast one hybrid

Indexed keywords

HORDEUM; TRITICUM AESTIVUM; ZEA MAYS;

EID: 79960738165     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-154-3_3     Document Type: Chapter

References (26)

1. Lee, T. I. and Young, R. A. (2000) Transcription of eukaryotic protein-coding genes. Annu. Rev. Genet. 34, 77–137.
2. Riechmann, J. L. and Ratcliffe, O. J. (2000) A genomic perspective on plant transcription factors. Curr. Opin. Plant Biol. 3, 423–434.
3. Fields, S. and Song, O. K. (1989) A novel genetic system to detect protein–protein interactions. Nature 340, 245–246.
4. Zhu, Y. Y., Machleder, E. M., Chenchik, A., Li, R., and Siebert, P. D. (2001) Reverse transcriptase template switching: a SMART (TM) approach for full-length cDNA library construction. Biotechniques 30, 892–897.
5. Meijer, A. H., Ouwerkerk, P. B. F., and Hoge, J. H. C. (1998) Vectors for transcription factor cloning and target site identification by means of genetic selection in yeast. Yeast 14, 1407–1415.
6. Ouwerkerk, P. B. F. and Meijer, A. H. (2001) Yeast one-hybrid screening for DNA-protein interactions, in Current Protocols in Molecular Biology (Ausubel, M., ed.), pp. 12.12.1–12.12.22. Wiley, New York, NY.
7. Sieweke, M. (2000) Detection of transcription factor partners with a yeast one hybrid screen. Methods Mol. Biol. 130, 59–77.
8. Meijer, A. H., de Kam, R. J., d’Erfurth, I., Shen, W., and Hoge, J. H. C. (2000) HD-Zip proteins of families I and II from rice: interactions and functional properties. Mol. Gen. Genet. 263, 12–21.
9. Deng, X., Phillips, J., Meijer, A. H., Salamini, F., and Bartels, D. (2002) Characterization of five novel dehydration-responsive homeodomain leucine zipper genes from the resurrection plant Craterostigma plantagineum. Plant Mol. Biol. 49, 601–610.
10. Kim, S. Y., Chung, H. J., and Thomas, T. L. (1997) Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system. Plant J. 11, 1237–1251.
11. Kizis, D. and Pages, M. (2002) Maize DRE-binding proteins DBF1 and DBF2 are involved in rab17 regulation through the drought-responsive element in an ABA-dependent pathway. Plant J. 30, 679–689.
12. Lopato, S., Bazanova, N., Morran, S., Mil-ligan, A. S., Shirley, N., and Langridge, P. (2006) Isolation of plant transcription factors using a modified yeast one-hybrid system. Plant Methods 2, 3–17.
13. Seth, D., Gorrell, M. D., McGuinness, P. H., Leo, M. A., Lieber, C. S., McCaughan, G. W., and Haber, P. S. (2003) SMART amplification maintains representation of relative gene expression: quantitative validation by real time PCR and application to studies of alcoholic liver disease in primates. J. Biochem. Biophys. Methods 55, 53–66.
14. Wellenreuther, R., Schupp, I., Poustka, A., and Wiemann, S. (2004) SMART amplification combined with cDNA size fractionation in order to obtain large full-length clones. BMC Genomics 5, 36–43.
15. Fusco, C., Guidotti, E., and Zervos, A. S. (1999) In vivo construction of cDNA libraries for use in the yeast two-hybrid system. Yeast 15, 715–720.
16. Sessa, G., Morelli, G., and Ruberti, I. (1993) The Athb-1 and Athb-2 Hd-Zip domains homodimerize forming complexes of different DNA-binding specificities. EMBO J. 12, 3507–3517.
17. Sessa, G., Morelli, G., and Ruberti, I. (1997) DNA-binding specificity of the homeodomain leucine zipper domain. J. Mol. Biol. 274, 303–309.
18. Abe, M., Takahashi, T., and Komeda, Y. (2001) Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein. Plant J. 26, 487–494.
19. Hofer, J., Gourlay, C., Michael, A., and Ellis, T. H. N. (2001) Expression of a class 1 knotted1-like homeobox gene is down-regulated in pea compound leaf primordial. Plant Mol. Biol. 45, 387–398.
20. Chaboute, M. E., Clement, B., and Philipps, G. (2002) S phase and meristem-specific expression of the tobacco RNR1b gene is mediated by an E2F element located in the 5 leader sequence. J. Biol. Chem. 277, 17845–17851.
21. Yamaguchi-Shinozaki, K. and Shinozaki, K. (1994) A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress. Plant Cell 6, 251–264.
22. Busk, P. K., Jensen, A. B., and Pages, M. (1997) Regulatory elements in vivo in the promoter of the abscisic acid responsive gene rab17 from maize. Plant J. 11, 1285–1295.
23. Xue, G. P. (2002) An AP2 domain transcription factor HvCBF1 activates expression of cold-responsive genes in barley through interaction with a (G/a)(C/t)CGAC motif. Biochim. Biophys. Acta 1577, 63–72.
24. Zhang, H. W., Huang, Z. J., Xie, B. Y., Chen, Q., Tian, X., Zhang, X. L., Zhang, H. B., Lu, X. Y., Huang, D. F., and Huang, R. F. (2004) The ethylene-, jasmonate-, abscisic acid-and NaCl-responsive tomato transcription factor JERF1 modulates expression of GCC box-containing genes and salt tolerance in tobacco. Planta 220, 262–270.
25. Choi, T. Y., Cho, N. Y., Oh, Y., Yoo, M. A., Matsukage, A., Ryu, Y., Han, K., Yoon, J., and Baek, K. (2000) The DNA replication-related element (DRE)-DRE-binding factor (DREF) system may be involved in the expression of the Drosophila melanogaster TBP gene. FEBS Lett. 483, 71–77.
26. Xue, G. P. (2005) A CELD-fusion method for rapid determination of the DNA-binding sequence specificity of novel plant DNA-binding proteins. Plant J. 41, 638–649.