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Volumn 81, Issue 3, 2011, Pages 689-704

Complex regulation of the global regulatory gene csrA: CsrA-mediated translational repression, transcription from five promoters by Eσ70 and EσS, and indirect transcriptional activation by CsrA

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN CSRA; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

EID: 79960722197     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2011.07723.x     Document Type: Article
Times cited : (71)

References (37)
  • 1
    • 34247169597 scopus 로고    scopus 로고
    • CsrB sRNA family: sequestration of RNA-binding regulatory proteins
    • Babitzke, P., and Romeo, T. (2007) CsrB sRNA family: sequestration of RNA-binding regulatory proteins. Curr Opin Microbiol 10: 156-163.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 156-163
    • Babitzke, P.1    Romeo, T.2
  • 2
    • 0041757737 scopus 로고    scopus 로고
    • Role of RNA structure in transcription attenuation in Bacillus subtilis: the trpEDCFBA operon as a model system
    • Babitzke, P., Schaak, J., Yakhnin, A.V., and Bevilacqua, P.C. (2003) Role of RNA structure in transcription attenuation in Bacillus subtilis: the trpEDCFBA operon as a model system. Methods Enzymol 371: 392-404.
    • (2003) Methods Enzymol , vol.371 , pp. 392-404
    • Babitzke, P.1    Schaak, J.2    Yakhnin, A.V.3    Bevilacqua, P.C.4
  • 3
    • 0036016824 scopus 로고    scopus 로고
    • CsrA regulates glycogen biosynthesis by preventing translation of glgC in Escherichia coli
    • Baker, C.S., Morozov, I., Suzuki, K., Romeo, T., and Babitzke, P. (2002) CsrA regulates glycogen biosynthesis by preventing translation of glgC in Escherichia coli. Mol Microbiol 44: 1599-1610.
    • (2002) Mol Microbiol , vol.44 , pp. 1599-1610
    • Baker, C.S.1    Morozov, I.2    Suzuki, K.3    Romeo, T.4    Babitzke, P.5
  • 4
    • 34547638620 scopus 로고    scopus 로고
    • CsrA inhibits translation initiation of Escherichia coli hfq by binding to a single site overlapping the Shine-Dalgarno sequence
    • Baker, C.S., Eöry, L.A., Yakhnin, H., Mercante, J., Romeo, T., and Babitzke, P. (2007) CsrA inhibits translation initiation of Escherichia coli hfq by binding to a single site overlapping the Shine-Dalgarno sequence. J Bacteriol 189: 5472-5481.
    • (2007) J Bacteriol , vol.189 , pp. 5472-5481
    • Baker, C.S.1    Eöry, L.A.2    Yakhnin, H.3    Mercante, J.4    Romeo, T.5    Babitzke, P.6
  • 6
    • 0032506045 scopus 로고    scopus 로고
    • Thermodynamic analysis of an RNA combinatorial library contained in a short hairpin
    • Bevilacqua, J.M., and Bevilacqua, P.C. (1998) Thermodynamic analysis of an RNA combinatorial library contained in a short hairpin. Biochemistry 37: 15877-15884.
    • (1998) Biochemistry , vol.37 , pp. 15877-15884
    • Bevilacqua, J.M.1    Bevilacqua, P.C.2
  • 7
    • 77949770045 scopus 로고    scopus 로고
    • The physiological stimulus for the BarA sensor kinase
    • Chavez, R.G., Alvarez, A.F., Romeo, T., and Georgellis, D. (2010) The physiological stimulus for the BarA sensor kinase. J Bacteriol 192: 2009-2012.
    • (2010) J Bacteriol , vol.192 , pp. 2009-2012
    • Chavez, R.G.1    Alvarez, A.F.2    Romeo, T.3    Georgellis, D.4
  • 8
    • 33745463774 scopus 로고    scopus 로고
    • E, by guanosine 3',5'-bispyrophosphate (ppGpp)
    • E, by guanosine 3', 5'-bispyrophosphate (ppGpp). J Bacteriol 188: 4627-4634.
    • (2006) J Bacteriol , vol.188 , pp. 4627-4634
    • Costanzo, A.1    Ades, S.E.2
  • 9
    • 0038105085 scopus 로고    scopus 로고
    • CsrA regulates translation of the Escherichia coli carbon starvation gene, cstA, by blocking ribosome access to the cstA transcript
    • Dubey, A.K., Baker, C.S., Suzuki, K., Jones, A.D., Pandit, P., Romeo, T., and Babitzke, P. (2003) CsrA regulates translation of the Escherichia coli carbon starvation gene, cstA, by blocking ribosome access to the cstA transcript. J Bacteriol 185: 4450-4460.
    • (2003) J Bacteriol , vol.185 , pp. 4450-4460
    • Dubey, A.K.1    Baker, C.S.2    Suzuki, K.3    Jones, A.D.4    Pandit, P.5    Romeo, T.6    Babitzke, P.7
  • 10
    • 25844493154 scopus 로고    scopus 로고
    • RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction
    • Dubey, A.K., Baker, C.S., Romeo, T., and Babitzke, P. (2005) RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction. RNA 11: 1579-1587.
    • (2005) RNA , vol.11 , pp. 1579-1587
    • Dubey, A.K.1    Baker, C.S.2    Romeo, T.3    Babitzke, P.4
  • 12
    • 0034816477 scopus 로고    scopus 로고
    • Regulatory interactions of Csr components: the RNA binding protein CsrA activates csrB transcription in Escherichia coli
    • Gudapaty, S., Suzuki, K., Wang, X., Babitzke, P., and Romeo, T. (2001) Regulatory interactions of Csr components: the RNA binding protein CsrA activates csrB transcription in Escherichia coli. J Bacteriol 183: 6017-6027.
    • (2001) J Bacteriol , vol.183 , pp. 6017-6027
    • Gudapaty, S.1    Suzuki, K.2    Wang, X.3    Babitzke, P.4    Romeo, T.5
  • 13
    • 0035682064 scopus 로고    scopus 로고
    • Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria
    • Haldimann, A., and Wanner, B.L. (2001) Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria. J Bacteriol 183: 6384-6393.
    • (2001) J Bacteriol , vol.183 , pp. 6384-6393
    • Haldimann, A.1    Wanner, B.L.2
  • 14
    • 71749093772 scopus 로고    scopus 로고
    • S (RpoS) and the general stress response in Escherichia coli
    • S (RpoS) and the general stress response in Escherichia coli. Res Microbiol 160: 667-676.
    • (2009) Res Microbiol , vol.160 , pp. 667-676
    • Hengge, R.1
  • 15
    • 77957229743 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA
    • Irie, Y., Starkey, M., Edwards, A.N., Wozniak, D.J., Romeo, T., and Parsek, M.R. (2010) Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA. Mol Microbiol 78: 158-172.
    • (2010) Mol Microbiol , vol.78 , pp. 158-172
    • Irie, Y.1    Starkey, M.2    Edwards, A.N.3    Wozniak, D.J.4    Romeo, T.5    Parsek, M.R.6
  • 16
    • 77649146331 scopus 로고    scopus 로고
    • Complex regulatory network encompassing the Csr, c-di-GMP and motility systems of Salmonella Typhimurium
    • Jonas, K., Edwards, A.N., Ahmad, I., Romeo, T., Römling, U., and Melefors, O. (2010) Complex regulatory network encompassing the Csr, c-di-GMP and motility systems of Salmonella Typhimurium. Environ Microbiol 12: 524-540.
    • (2010) Environ Microbiol , vol.12 , pp. 524-540
    • Jonas, K.1    Edwards, A.N.2    Ahmad, I.3    Romeo, T.4    Römling, U.5    Melefors, O.6
  • 17
    • 34748819479 scopus 로고    scopus 로고
    • Mechanism of hcnA mRNA recognition in the Gac/Rsm signal transduction pathway of Pseudomonas fluorescens
    • Lapouge, K., Sineva, E., Lindell, M., Starke, K., Baker, C.S., Babitzke, P., and Haas, D. (2007) Mechanism of hcnA mRNA recognition in the Gac/Rsm signal transduction pathway of Pseudomonas fluorescens. Mol Microbiol 66: 341-356.
    • (2007) Mol Microbiol , vol.66 , pp. 341-356
    • Lapouge, K.1    Sineva, E.2    Lindell, M.3    Starke, K.4    Baker, C.S.5    Babitzke, P.6    Haas, D.7
  • 18
    • 0030856586 scopus 로고    scopus 로고
    • The global regulator CsrA of Escherichia coli is a specific mRNA-binding protein
    • Liu, M.Y., and Romeo, T. (1997) The global regulator CsrA of Escherichia coli is a specific mRNA-binding protein. J Bacteriol 179: 4639-4642.
    • (1997) J Bacteriol , vol.179 , pp. 4639-4642
    • Liu, M.Y.1    Romeo, T.2
  • 19
    • 0030841920 scopus 로고    scopus 로고
    • The RNA molecule CsrB binds to the global regulatory protein CsrA and antagonizes its activity in Escherichia coli
    • Liu, M.Y., Gui, G., Wei, B., Preston, J.F., III, Oakford, L., Yuksel, U., etal. (1997) The RNA molecule CsrB binds to the global regulatory protein CsrA and antagonizes its activity in Escherichia coli. J Biol Chem 272: 17502-17510.
    • (1997) J Biol Chem , vol.272 , pp. 17502-17510
    • Liu, M.Y.1    Gui, G.2    Wei, B.3    Preston III, J.F.4    Oakford, L.5    Yuksel, U.6
  • 20
    • 0025195680 scopus 로고
    • Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria
    • de Lorenzo, V., Herrero, M., Jakubzik, U., and Timmis, K.N. (1990) Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria. J Bacteriol 172: 6568-6572.
    • (1990) J Bacteriol , vol.172 , pp. 6568-6572
    • de Lorenzo, V.1    Herrero, M.2    Jakubzik, U.3    Timmis, K.N.4
  • 22
    • 33846009817 scopus 로고    scopus 로고
    • Comprehensive alanine-scanning mutagenesis of Escherichia coli CsrA defines two subdomains of critical functional importance
    • Mercante, J., Suzuki, K., Cheng, X., Babitzke, P., and Romeo, T. (2006) Comprehensive alanine-scanning mutagenesis of Escherichia coli CsrA defines two subdomains of critical functional importance. J Biol Chem 281: 31832-31842.
    • (2006) J Biol Chem , vol.281 , pp. 31832-31842
    • Mercante, J.1    Suzuki, K.2    Cheng, X.3    Babitzke, P.4    Romeo, T.5
  • 23
    • 69249217697 scopus 로고    scopus 로고
    • Molecular geometry of CsrA (RsmA) binding to RNA and its implications for regulated expression
    • Mercante, J., Edwards, A.N., Dubey, A.K., Babitzke, P., and Romeo, T. (2009) Molecular geometry of CsrA (RsmA) binding to RNA and its implications for regulated expression. J Mol Biol 392: 511-528.
    • (2009) J Mol Biol , vol.392 , pp. 511-528
    • Mercante, J.1    Edwards, A.N.2    Dubey, A.K.3    Babitzke, P.4    Romeo, T.5
  • 25
    • 0031697252 scopus 로고    scopus 로고
    • Global regulation by the small RNA-binding protein CsrA and the non-coding RNA molecule CsrB
    • Romeo, T. (1998) Global regulation by the small RNA-binding protein CsrA and the non-coding RNA molecule CsrB. Mol Microbiol 29: 1321-1330.
    • (1998) Mol Microbiol , vol.29 , pp. 1321-1330
    • Romeo, T.1
  • 26
    • 0027171032 scopus 로고
    • Identification and molecular characterization of csrA, a pleiotropic gene from Escherichia coli that affects glycogen biosynthesis, gluconeogenesis, cell size, and surface properties
    • Romeo, T., Gong, M., Liu, M.Y., and Brun-Zinkernagel, A.M. (1993) Identification and molecular characterization of csrA, a pleiotropic gene from Escherichia coli that affects glycogen biosynthesis, gluconeogenesis, cell size, and surface properties. J Bacteriol 175: 4744-4755.
    • (1993) J Bacteriol , vol.175 , pp. 4744-4755
    • Romeo, T.1    Gong, M.2    Liu, M.Y.3    Brun-Zinkernagel, A.M.4
  • 27
    • 60549113332 scopus 로고    scopus 로고
    • Deciphering bacterial flagellar gene regulatory networks in the genomic era
    • Smith, T.G., and Hoover, T.R. (2009) Deciphering bacterial flagellar gene regulatory networks in the genomic era. Adv Appl Microbiol 67: 257-295.
    • (2009) Adv Appl Microbiol , vol.67 , pp. 257-295
    • Smith, T.G.1    Hoover, T.R.2
  • 28
    • 33748705968 scopus 로고    scopus 로고
    • Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E
    • Suzuki, K., Babitzke, P., Kushner, S.R., and Romeo, T. (2006) Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. Genes Dev 20: 2605-2617.
    • (2006) Genes Dev , vol.20 , pp. 2605-2617
    • Suzuki, K.1    Babitzke, P.2    Kushner, S.R.3    Romeo, T.4
  • 30
    • 77956781439 scopus 로고    scopus 로고
    • Post-transcriptional global regulation by CsrA in bacteria
    • Timmermans, J., and Van Melderen, L. (2010) Post-transcriptional global regulation by CsrA in bacteria. Cell Mol Life Sci 67: 2897-2908.
    • (2010) Cell Mol Life Sci , vol.67 , pp. 2897-2908
    • Timmermans, J.1    Van Melderen, L.2
  • 31
    • 29144451307 scopus 로고    scopus 로고
    • Structure of the Escherichia coli FlhDC complex, a prokaryotic heteromeric regulator of transcription
    • Wang, S., Fleming, R.T., Westbrook, E.M., Matsumura, P., and McKay, D.B. (2006) Structure of the Escherichia coli FlhDC complex, a prokaryotic heteromeric regulator of transcription. J Mol Biol 355: 798-808.
    • (2006) J Mol Biol , vol.355 , pp. 798-808
    • Wang, S.1    Fleming, R.T.2    Westbrook, E.M.3    Matsumura, P.4    McKay, D.B.5
  • 32
    • 20344405462 scopus 로고    scopus 로고
    • CsrA post-transcriptionally represses pgaABCD, responsible for synthesis of a biofilm polysaccharide adhesin of Escherichia coli
    • Wang, X., Dubey, A.K., Suzuki, K., Baker, C.S., Babitzke, P., and Romeo, T. (2005) CsrA post-transcriptionally represses pgaABCD, responsible for synthesis of a biofilm polysaccharide adhesin of Escherichia coli. Mol Microbiol 56: 1648-1663.
    • (2005) Mol Microbiol , vol.56 , pp. 1648-1663
    • Wang, X.1    Dubey, A.K.2    Suzuki, K.3    Baker, C.S.4    Babitzke, P.5    Romeo, T.6
  • 33
    • 0035048862 scopus 로고    scopus 로고
    • Positive regulation of motility and flhDC expression by the RNA-binding protein CsrA of Escherichia coli
    • Wei, B.L., Brun-Zinkernagel, A.-M., Simecka, J.W., Prüß, B.M., Babitzke, P., and Romeo, T. (2001) Positive regulation of motility and flhDC expression by the RNA-binding protein CsrA of Escherichia coli. Mol Microbiol 40: 245-256.
    • (2001) Mol Microbiol , vol.40 , pp. 245-256
    • Wei, B.L.1    Brun-Zinkernagel, A.-M.2    Simecka, J.W.3    Prüß, B.M.4    Babitzke, P.5    Romeo, T.6
  • 34
    • 0037899184 scopus 로고    scopus 로고
    • A novel sRNA component of the carbon storage regulatory system of Escherichia coli
    • Weilbacher, T., Suzuki, K., Dubey, A.K., Wang, X., Gudapaty, S., Morozov, I., etal. (2003) A novel sRNA component of the carbon storage regulatory system of Escherichia coli. Mol Microbiol 48: 657-670.
    • (2003) Mol Microbiol , vol.48 , pp. 657-670
    • Weilbacher, T.1    Suzuki, K.2    Dubey, A.K.3    Wang, X.4    Gudapaty, S.5    Morozov, I.6
  • 35
    • 0034635443 scopus 로고    scopus 로고
    • Effects of mutations in the l-tryptophan binding pocket of the trp RNA-binding attenuation protein of Bacillus subtilis
    • Yakhnin, A.V., Trimble, J.J., Chiaro, C.R., and Babitzke, P. (2000) Effects of mutations in the l-tryptophan binding pocket of the trp RNA-binding attenuation protein of Bacillus subtilis. J Biol Chem 275: 4519-4524.
    • (2000) J Biol Chem , vol.275 , pp. 4519-4524
    • Yakhnin, A.V.1    Trimble, J.J.2    Chiaro, C.R.3    Babitzke, P.4
  • 36
    • 33747074853 scopus 로고    scopus 로고
    • The trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis regulates translation initiation of ycbK, a gene encoding a putative efflux protein, by blocking ribosome binding
    • Yakhnin, H., Yakhnin, A.V., and Babitzke, P. (2006) The trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis regulates translation initiation of ycbK, a gene encoding a putative efflux protein, by blocking ribosome binding. Mol Microbiol 61: 1252-1266.
    • (2006) Mol Microbiol , vol.61 , pp. 1252-1266
    • Yakhnin, H.1    Yakhnin, A.V.2    Babitzke, P.3
  • 37
    • 34250026134 scopus 로고    scopus 로고
    • CsrA of Bacillus subtilis regulates translation initiation of the gene encoding the flagellin protein (hag) by blocking ribosome binding
    • Yakhnin, H., Pandit, P., Petty, T.J., Baker, C.S., Romeo, T., and Babitzke, P. (2007) CsrA of Bacillus subtilis regulates translation initiation of the gene encoding the flagellin protein (hag) by blocking ribosome binding. Mol Microbiol 64: 1605-1620.
    • (2007) Mol Microbiol , vol.64 , pp. 1605-1620
    • Yakhnin, H.1    Pandit, P.2    Petty, T.J.3    Baker, C.S.4    Romeo, T.5    Babitzke, P.6


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