메뉴 건너뛰기




Volumn 57, Issue 7, 2011, Pages 617-622

Variations in the 16S-23S rRNA internal transcribed spacer of fibrolytic butyrivibrio isolates from the reindeer rumen

Author keywords

16S 23S rRNA intergenic spacer; Fibrolytic bacteria; Probiotic; Ruminants

Indexed keywords

BACTERIAL RNA; RNA 16S; RNA 23S;

EID: 79960711678     PISSN: 00084166     EISSN: 14803275     Source Type: Journal    
DOI: 10.1139/w11-038     Document Type: Note
Times cited : (2)

References (24)
  • 1
    • 0034993578 scopus 로고    scopus 로고
    • Is the 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? A case study in cyanobacteria
    • PMID: 11371594
    • Boyer, S.L., Flechtner, V.R., and Johansen, J.R. 2001. Is the 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? A case study in cyanobacteria. Mol. Biol. Evol. 18(6): 1057-1069. PMID: 11371594.
    • (2001) Mol. Biol Evol , vol.18 , Issue.6 , pp. 1057-1069
    • Boyer, S.L.1    Flechtner, V.R.2    Johansen, J.R.3
  • 2
    • 62349141945 scopus 로고    scopus 로고
    • 16S-23S rDNA internal transcribed spacer regions in four Proteus species
    • doi:10.1016/j.mimet.2009.01.024. PMID:19318046
    • Cao, B., Wang, M., Liu, L., Zhou, Z., Wen, S., Rozalski, A., and Wang, L. 2009. 16S-23S rDNA internal transcribed spacer regions in four Proteus species. J. Microbiol. Methods, 77(1): 109-118. doi:10.1016/j.mimet.2009.01.024. PMID:19318046.
    • (2009) J. Microbiol. Methods , vol.77 , Issue.1 , pp. 109-118
    • Cao, B.1    Wang, M.2    Liu, L.3    Zhou, Z.4    Wen, S.5    Rozalski, A.6    Wang, L.7
  • 3
    • 0028126829 scopus 로고
    • The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations
    • doi:10.1099/00207713-44-4-812. PMID:7981107
    • Collins, M.D., Lawson, P.A., Willems, A., Cordoba, J.J., Fernandez- Garayzabal, J., Garcia, P., et al. 1994. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int. J. Syst. Bacteriol. 44(4): 812-826. doi:10.1099/00207713-44-4-812. PMID:7981107.
    • (1994) Int. J. Syst. Bacteriol , vol.44 , Issue.4 , pp. 812-826
    • Collins, M.D.1    Lawson, P.A.2    Willems, A.3    Cordoba, J.J.4    Fernandez-Garayzabal, J.5    Garcia, P.6
  • 4
    • 70349243603 scopus 로고    scopus 로고
    • Analysis of 16S-23S rRNA gene internal transcribed spacer of Vibrio anguillarum and Vibrio ordalii strains isolated from fish
    • doi:10.1111/j.1574-6968.2009.01755.x. PMID:19732149
    • Fernández, J., and Avendaño-Herrera, R. 2009. Analysis of 16S-23S rRNA gene internal transcribed spacer of Vibrio anguillarum and Vibrio ordalii strains isolated from fish. FEMS Microbiol. Lett. 299(2): 184-192. doi:10.1111/j.1574-6968.2009.01755.x. PMID:19732149.
    • (2009) FEMS Microbiol. Lett , vol.299 , Issue.2 , pp. 184-192
    • Fernández, J.1    Avendaño-Herrera, R.2
  • 5
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • doi:10.1099/00207713-42-1-166. PMID:1371061
    • Fox, G.E., Wisotzkey, J.D., and Jurtshuk, P., Jr. 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42(1): 166-170. doi:10.1099/00207713-42-1-166. PMID:1371061.
    • (1992) Int. J. Syst. Bacteriol , vol.42 , Issue.1 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk Jr., P.3
  • 6
    • 0344172783 scopus 로고    scopus 로고
    • The role of recombination and mutation in 16S-23S rDNA spacer rearrangements
    • doi:10.1016/S0378-1119(99)00224-3. PMID:10571000
    • Gürtler, V. 1999. The role of recombination and mutation in 16S-23S rDNA spacer rearrangements. Gene, 238(1): 241-252. doi:10.1016/S0378-1119(99)00224-3. PMID:10571000.
    • (1999) Gene , vol.238 , Issue.1 , pp. 241-252
    • Gürtler, V.1
  • 7
    • 0030054296 scopus 로고    scopus 로고
    • New approaches to typing andidentification of bacteria using the 16S-23S rDNA spacer region
    • doi:10.1099/13500872-142-1-3. PMID:8581168
    • Gürtler, V., and Stanisich, V.A. 1996. New approaches to typing andidentification of bacteria using the 16S-23S rDNA spacer region. Microbiology, 142(1): 3-16. doi:10.1099/13500872-142-1-3. PMID:8581168.
    • (1996) Microbiology , vol.142 , Issue.1 , pp. 3-16
    • Gürtler, V.1    Stanisich, V.A.2
  • 8
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • doi:10.1093/nar/25.5.955
    • Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41: 95-98. doi:10.1093/nar/25.5.955.
    • (1999) Nucl. Acids Symp. Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 9
    • 0030854739 scopus 로고    scopus 로고
    • Trnascan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • doi:10.1093/nar/25.5.955. PMID:9023104
    • Lowe, T.M., and Eddy, S.R. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25(5): 955-964. doi:10.1093/nar/25.5.955. PMID:9023104.
    • (1997) Nucleic Acids Res , vol.25 , Issue.5 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 10
    • 0242657434 scopus 로고    scopus 로고
    • Ecology of uncultivated Oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches
    • doi:10.1128/AEM.69.11.6808-6815.2003. PMID:14602644
    • Mackie, R.I., Aminov, R.I., Hu, W., Klieve, A.V., Ouwerkerk, D., Sundset, M.A., and Kamagata, Y. 2003. Ecology of uncultivated Oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches. Appl. Environ. Microbiol. 69(11): 6808-6815. doi:10.1128/AEM.69.11.6808-6815.2003. PMID:14602644.
    • (2003) Appl. Environ. Microbiol , vol.69 , Issue.11 , pp. 6808-6815
    • Mackie, R.I.1    Aminov, R.I.2    Hu, W.3    Klieve, A.V.4    Ouwerkerk, D.5    Sundset, M.A.6    Kamagata, Y.7
  • 11
    • 35048859183 scopus 로고    scopus 로고
    • Microbial ecology of the digestive tract in reindeer: Seasonal changes
    • Edited by W.H. Holtzapfel and P.J. Naughton. Elsevier, Oxford
    • Mathiesen, S.D., Mackie, R.I., Aschfalk, A., Ringø, E., and Sundset, M.A. 2005. Microbial ecology of the digestive tract in reindeer: seasonal changes. In Microbial ecology of the growing animal. Vol. 3. Edited by W.H. Holtzapfel and P.J. Naughton. Elsevier, Oxford. pp. 73-100.
    • (2005) Microbial Ecology of the Growing Animal , vol.3 , pp. 73-100
    • Mathiesen, S.D.1    Mackie, R.I.2    Aschfalk, A.3    Ringø, E.4    Sundset, M.A.5
  • 12
    • 72149126871 scopus 로고    scopus 로고
    • Phylogeny and taxonomy of a diverse collection of Bradyrhizobium strains based on multilocus sequence analysis of the 16S rRNA gene, ITS region and glnII, recA, atpD and dnaK genes
    • doi:10.1099/ijs.0.009779-0. PMID:19628593
    • Menna, P., Barcellos, F.G., and Hungria, M. 2009. Phylogeny and taxonomy of a diverse collection of Bradyrhizobium strains based on multilocus sequence analysis of the 16S rRNA gene, ITS region and glnII, recA, atpD and dnaK genes. Int. J. Syst. Evol. Microbiol. 59(12): 2934-2950. doi:10.1099/ijs.0.009779-0. PMID:19628593.
    • (2009) Int. J. Syst. Evol. Microbiol , vol.59 , Issue.12 , pp. 2934-2950
    • Menna, P.1    Barcellos, F.G.2    Hungria, M.3
  • 13
    • 24744450947 scopus 로고    scopus 로고
    • Rapid species identification and partial strain differentiation of Clostridium butyricum by PCR using 16S-23S rDNA intergenic spacer regions
    • PMID:16034204
    • Nakanishi, S., Kuwahara, T., Nakayama, H., Tanaka, M., and Ohnishi, Y. 2005. Rapid species identification and partial strain differentiation of Clostridium butyricum by PCR using 16S-23S rDNA intergenic spacer regions. Microbiol. Immunol. 49(7): 613-621. PMID:16034204.
    • (2005) Microbiol. Immunol , vol.49 , Issue.7 , pp. 613-621
    • Nakanishi, S.1    Kuwahara, T.2    Nakayama, H.3    Tanaka, M.4    Ohnishi, Y.5
  • 14
    • 0038352074 scopus 로고    scopus 로고
    • 16S-23S ribosomal DNA intergenic spacer regions in cellulolytic myxobacteria and differentiation of closely related strains
    • doi:10.1078/072320203322346119. PMID:12866853
    • Nguimbi, E., Li, Y.-Z., Gao, B.-L., Li, Z.-F., Wang, B., Wu, Z.-H., et al. 2003. 16S-23S ribosomal DNA intergenic spacer regions in cellulolytic myxobacteria and differentiation of closely related strains. Syst. Appl. Microbiol. 26(2): 262-268. doi:10.1078/072320203322346119. PMID:12866853.
    • (2003) Syst. Appl. Microbiol , vol.26 , Issue.2 , pp. 262-268
    • Nguimbi, E.1    Li, Y.-Z.2    Gao, B.-L.3    Li, Z.-F.4    Wang, B.5    Wu, Z.-H.6
  • 15
    • 0242688224 scopus 로고    scopus 로고
    • The bacterial population adherent to plant particles in the rumen of reindeer fed lichen, timothy hay or silage
    • Olsen, M.A., and Mathiesen, S.D. 1998. The bacterial population adherent to plant particles in the rumen of reindeer fed lichen, timothy hay or silage. Rangifer, 18: 55-64.
    • (1998) Rangifer , vol.18 , pp. 55-64
    • Olsen, M.A.1    Mathiesen, S.D.2
  • 16
    • 0021855149 scopus 로고
    • Seasonal changes in the ruminal microflora of the high-arctic Svalbard reindeer (Rangifer tarandus platyrhynchus)
    • PMID:4026289
    • Orpin, C.G., Mathiesen, S.D., Greenwood, Y., and Blix, A.S. 1985. Seasonal changes in the ruminal microflora of the high-arctic Svalbard reindeer (Rangifer tarandus platyrhynchus). Appl. Environ. Microbiol. 50(1): 144-151. PMID:4026289.
    • (1985) Appl. Environ. Microbiol , vol.50 , Issue.1 , pp. 144-151
    • Orpin, C.G.1    Mathiesen, S.D.2    Greenwood, Y.3    Blix, A.S.4
  • 17
    • 33947516520 scopus 로고    scopus 로고
    • Detection and identification of microorganisms by gene amplification and sequencing
    • doi:10.1086/512818. PMID:17366460
    • Petti, C.A. 2007. Detection and identification of microorganisms by gene amplification and sequencing. Clin. Infect. Dis. 44(8): 1108-1114 doi:10.1086/512818. PMID:17366460.
    • (2007) Clin. Infect. Dis , vol.44 , Issue.8 , pp. 1108-1114
    • Petti, C.A.1
  • 19
    • 79954585782 scopus 로고    scopus 로고
    • Development of a signature probe targeting the 16S-23S rRNA internal transcribed spacer of a ruminal Ruminococcus flavefaciens isolate from reindeer
    • doi:10.3920/BM2010.0044
    • Præsteng, K.E., Mackie, R.I., Cann, I.K.O., Mathiesen, S.D., and Sundset, M.A. 2011. Development of a signature probe targeting the 16S-23S rRNA internal transcribed spacer of a ruminal Ruminococcus flavefaciens isolate from reindeer. Beneficial Microbes, 2(1): 47-55. doi:10.3920/BM2010.0044.
    • (2011) Beneficial Microbes , vol.2 , Issue.1 , pp. 47-55
    • Præsteng, K.E.1    Mackie, R.I.2    Cann, I.K.O.3    Mathiesen, S.D.4    Sundset, M.A.5
  • 20
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • doi:10.1099/00207713-44-4-846
    • Stackebrandt, E., and Goebel, B.M. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44(4): 846-849. doi:10.1099/00207713-44-4-846.
    • (1994) Int. J. Syst. Bacteriol , vol.44 , Issue.4 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 21
    • 35048829850 scopus 로고    scopus 로고
    • Novel rumen bacterial diversity in two geographically separated sub-species of reindeer
    • doi:10.1007/s00248-007-9254-x. PMID:17473904
    • Sundset, M.A., Præsteng, K.E., Cann, I.K.O., Mathiesen, S.D., and Mackie, R.I. 2007. Novel rumen bacterial diversity in two geographically separated sub-species of reindeer. Microb. Ecol. 54(3): 424-438. doi:10.1007/s00248-007-9254-x. PMID:17473904.
    • (2007) Microb. Ecol , vol.54 , Issue.3 , pp. 424-438
    • Sundset, M.A.1    Præsteng, K.E.2    Cann, I.K.O.3    Mathiesen, S.D.4    Mackie, R.I.5
  • 22
    • 59449083843 scopus 로고    scopus 로고
    • Molecular diversity of the rumen microbiome of Norwegian reindeer on natural summer pasture
    • doi:10.1007/s00248-008-9414-7. PMID:18604648
    • Sundset, M.A., Edwards, J.E., Cheng, Y.F., Senosiain, R.S., Fraile, M.N., Northwood, K.S., et al. 2009a. Molecular diversity of the rumen microbiome of Norwegian reindeer on natural summer pasture. Microb. Ecol. 57(2): 335-348. doi:10.1007/s00248-008-9414-7. PMID:18604648.
    • (2009) Microb. Ecol , vol.57 , Issue.2 , pp. 335-348
    • Sundset, M.A.1    Edwards, J.E.2    Cheng, Y.F.3    Senosiain, R.S.4    Fraile, M.N.5    Northwood, K.S.6
  • 23
    • 70449130669 scopus 로고    scopus 로고
    • Rumen microbial diversity in Svalbard reindeer, with particular emphasis on methanogenic archaea
    • doi:10.1111/j. 1574-6941.2009.00750.x. PMID:19702875
    • Sundset, M.A., Edwards, J.E., Cheng, Y.F., Senosiain, R.S., Fraile, M.N., Northwood, K.S., et al. 2009b. Rumen microbial diversity in Svalbard reindeer, with particular emphasis on methanogenic archaea. FEMS Microbiol. Ecol. 70(3): 553-562. doi:10.1111/j. 1574-6941.2009.00750.x. PMID:19702875.
    • (2009) FEMS Microbiol. Ecol , vol.70 , Issue.3 , pp. 553-562
    • Sundset, M.A.1    Edwards, J.E.2    Cheng, Y.F.3    Senosiain, R.S.4    Fraile, M.N.5    Northwood, K.S.6
  • 24
    • 84920642855 scopus 로고    scopus 로고
    • Butyrivibrio
    • Edited by P. DeVos, G.M. Garrity, D. Jones, N.R. Krieg, W. Ludvig, F.A. Rainey, K.-H. Schleifer, and W.B. Whitman. Springer, New York
    • Willems, A., and Collins, M.D. 2009. Butyrivibrio. In Bergey's manual of systematic bacteriology. The Firmicutes. Vol. 3. Edited by P. DeVos, G.M. Garrity, D. Jones, N.R. Krieg, W. Ludvig, F.A. Rainey, K.-H. Schleifer, and W.B. Whitman. Springer, New York. pp. 927-937.
    • (2009) Bergey's manual of systematic bacteriology. The Firmicutes , vol.3 , pp. 927-937
    • Willems, A.1    Collins, M.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.