The ubiquitin ligase Rsp5 is required for ribosome stability in Saccharomyces cerevisiae

RNA

Volumn 17, Issue 8, 2011, Pages 1422-1428

  Shcherbik, Natalia ^a   Pestov, Dimitri G ^a  

^a UNIVERSITY OF MEDICINE AND DENTISTRY OF NEW JERSEY   (United States)

Author keywords

E3 ubiquitin ligase; RNA decay; rRNA

Indexed keywords

RIBOSOME RNA; RSP5P; TRANSFER RNA; UBIQUITIN PROTEIN LIGASE; UNCLASSIFIED DRUG;

ARTICLE; AUTOPHAGY; CONTROLLED STUDY; GENE DELETION; GENE MUTATION; NONHUMAN; POLYSOME; PRIORITY JOURNAL; RIBOSOME; RIBOSOME SUBUNIT; SACCHAROMYCES CEREVISIAE; SEDIMENTATION RATE;

AUTOPHAGY; ENDOSOMAL SORTING COMPLEXES REQUIRED FOR TRANSPORT; MUTATION; RIBOSOMES; RNA, RIBOSOMAL; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; UBIQUITIN-PROTEIN LIGASE COMPLEXES;

SACCHAROMYCES CEREVISIAE; SACCHAROMYCETALES;

EID: 79960454538     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2615311     Document Type: Article

References (47)

1. Amberg DC, Goldstein AL, Cole CN. 1992. Isolation and characterization of RAT1: An essential gene of Saccharomyces cerevisiae required for the efficient nucleocytoplasmic trafficking of mRNA. Genes Dev 6: 1173-1189.
2. Basturea GN, Zundel MA, Deutscher MP. 2011. Degradation of ribosomal RNA during starvation: Comparison to quality control during steady-state growth and a role for RNase PH. RNA 17: 338-345.
3. Belgareh-Touzé N, Léon S, Erpapazoglou Z, Stawiecka-Mirota M, Urban-Grimal D, Haguenauer-Tsapis R. 2008. Versatile role of the yeast ubiquitin ligase Rsp5p in intracellular trafficking. Biochem Soc Trans 36: 791-796.
4. Chen ZJ, Sun LJ. 2009. Nonproteolytic functions of ubiquitin in cell signaling. Mol Cell 33: 275-286.
5. Cheong H, Klionsky DJ. 2008. Biochemical methods to monitor autophagy-related processes in yeast. Methods Enzymol 451: 1-26.
6. Cole SE, LaRiviere FJ, Merrikh CN, Moore MJ. 2009. A convergence of rRNA and mRNA quality control pathways revealed by mechanistic analysis of nonfunctional rRNA decay. Mol Cell 34: 440-450.
7. Deutscher MP. 2003. Degradation of stable RNA in bacteria. J Biol Chem 278: 45041-45044. (Pubitemid 37432634)
8. Dez C, Houseley J, Tollervey D. 2006. Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae. EMBO J 25: 1534-1546.
9. Fujii K, Kitabatake M, Sakata T, Miyata A, Ohno M. 2009. A role for ubiquitin in the clearance of nonfunctional rRNAs. Genes Dev 23: 963-974.
10. Haitani Y, Takagi H. 2008. Rsp5 is required for the nuclear export of mRNA of HSF1 and MSN2/4 under stress conditions in Saccharomyces cerevisiae. Genes Cells 13: 105-116. (Pubitemid 351188982)
11. Hicke L. 2001. Protein regulation by monoubiquitin. Nat Rev Mol Cell Biol 2: 195-201. (Pubitemid 33675744)
12. Hochstrasser M. 1996. Ubiquitin-dependent protein degradation. Annu Rev Genet 30: 405-439. (Pubitemid 27014474)
13. Huibregtse JM, Scheffner M, Beaudenon S, Howley PM. 1995. A family of proteins structurally and functionally related to the E6-AP ubiquitin-protein ligase. Proc Natl Acad Sci 92: 2563-2567.
14. Johnston GC, Singer RA, McFarlane S. 1977. Growth and cell division during nitrogen starvation of the yeast Saccharomyces cerevisiae. J Bacteriol 132: 723-730. (Pubitemid 8218143)
15. Jorgensen P, Rupes I, Sharom JR, Schneper L, Broach JR, Tyers M. 2004. A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size. Genes Dev 18: 2491-2505. (Pubitemid 39362892)
16. Ju Q, Warner JR. 1994. Ribosome synthesis during the growth cycle of Saccharomyces cerevisiae. Yeast 10: 151-157. (Pubitemid 24099030)
17. Kaliszewski P, Żoła̧dek T. 2008. The role of Rsp5 ubiquitin ligase in regulation of diverse processes in yeast cells. Acta Biochim Pol 55: 649-662.
18. Kaliszewski P, Ferreira T, Gajewska B, Szkopinska A, Berges T, Żoła̧dek T. 2006. Enhanced levels of Pis1p (phosphatidylinositol synthase) improve the growth of Saccharomyces cerevisiae cells deficient in Rsp5 ubiquitin ligase. Biochem J 395: 173-181.
19. Kief DR, Warner JR. 1981. Coordinate control of syntheses of ribosomal ribonucleic acid and ribosomal proteins during nutritional shift-up in Saccharomyces cerevisiae. Mol Cell Biol 1: 1007-1015. (Pubitemid 12197821)
20. Kos M, Tollervey D. 2010. Yeast pre-rRNA processing and modification occur cotranscriptionally. Mol Cell 37: 809-820.
21. Kraft C, Peter M. 2008. Is the Rsp5 ubiquitin ligase involved in the regulation of ribophagy? Autophagy 4: 838-840.
22. Kraft C, Deplazes A, Sohrmann M, Peter M. 2008. Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease. Nat Cell Biol 10: 602-610. (Pubitemid 351627380)
23. Krsmanović T, Kölling R. 2004. The HECT E3 ubiquitin ligase Rsp5 is important for ubiquitin homeostasis in yeast. FEBS Lett 577: 215-219. (Pubitemid 39452387)
24. Kwapisz M, Chołbiński P, Hopper AK, Rousset J, Żoła̧dek T. 2005. Rsp5 ubiquitin ligase modulates translation accuracy in yeast Saccharomyces cerevisiae. RNA 11: 1710-1718. (Pubitemid 41505545)
25. Lafontaine DLJ. 2010. A 'garbage can' for ribosomes: how eukaryotes degrade their ribosomes. Trends Biochem Sci 35: 267-277.
26. LaRiviere FJ, Cole SE, Ferullo DJ, Moore MJ. 2006. A late-acting quality control process for mature eukaryotic rRNAs. Mol Cell 24: 619-626. (Pubitemid 350284228)
27. Mroczek S, Kufel J. 2008. Apoptotic signals induce specific degradation of ribosomal RNA in yeast. Nucleic Acids Res 36: 2874-2888. (Pubitemid 351737180)
28. Neumann S, Petfalski E, Brügger B, Grosshans H, Wieland F, Tollervey D, Hurt E. 2003. Formation and nuclear export of tRNA, rRNA and mRNA is regulated by the ubiquitin ligase Rsp5p. EMBO Rep 4: 1156-1162. (Pubitemid 38094236)
29. Pestov DG, Lapik YR, Lau LF. 2008. Assays for ribosomal RNA processing and ribosome assembly. Curr Protoc Cell Biol doi: 10.1002/0471143030.cb2211s39.
30. Rodriguez MS, Gwizdek C, Haguenauer-Tsapis R, Dargemont C. 2003. The HECT ubiquitin ligase Rsp5p is required for proper nuclear export of mRNA in Saccharomyces cerevisiae. Traffic 4: 566-575. (Pubitemid 36896548)
31. Roos-Mattjus P, Sistonen L. 2004. The ubiquitin-proteasome pathway. Ann Med 36: 285-295. (Pubitemid 38789283)
32. Rotin D, Kumar S. 2009. Physiological functions of the HECT family of ubiquitin ligases. Nat Rev Mol Cell Biol 10: 398-409.
33. Rupp S, Wolf DH. 1995. Biogenesis of the yeast vacuole (lysosome). The use of active-site mutants of proteinase yscA to determine the necessity of the enzyme for vacuolar proteinase maturation and proteinase yscB stability. Eur J Biochem 231: 115-125.
34. Sagliocco FA, Moore PA, Brown AJ. 1996. Polysome analysis. Methods Mol Biol 53: 297-311.
35. Schmitt ME, Brown TA, Trumpower BL. 1990. A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res 18: 3091-3092. (Pubitemid 20178191)
36. Suzuki K, Ohsumi Y. 2007. Molecular machinery of autophagosome formation in yeast, Saccharomyces cerevisiae. FEBS Lett 581: 2156-2161. (Pubitemid 46709906)
37. Takeshige K, Baba M, Tsuboi S, Noda T, Ohsumi Y. 1992. Autophagy in yeast demonstrated with proteinase-deficient mutants and conditions for its induction. J Cell Biol 119: 301-311.
38. Thompson SJ, Loftus LT, Ashley MD, Meller R. 2008. Ubiquitin-proteasome system as a modulator of cell fate. Curr Opin Pharmacol 8: 90-95. (Pubitemid 351168692)
39. Tschochner H, Hurt E. 2003. Pre-ribosomes on the road from the nucleolus to the cytoplasm. Trends Cell Biol 13: 255-263. (Pubitemid 36556010)
40. Vanacova S, Stefl R. 2007. The exosome and RNA quality control in the nucleus. EMBO Rep 8: 651-657.
41. Wang G, Yang J, Huibregtse JM. 1999. Functional domains of the Rsp5 ubiquitin-protein ligase. Mol Cell Biol 19: 342-352. (Pubitemid 29018436)
42. Warner JR. 1999. The economics of ribosome biosynthesis in yeast. Trends Biochem Sci 24: 437-440. (Pubitemid 29528205)
43. Weber MJ. 1972. Ribosomal RNA turnover in contact inhibited cells. Nat New Biol 235: 58-61.
44. Weissman AM. 2001. Themes and variations on ubiquitylation. Nat Rev Mol Cell Biol 2: 169-178. (Pubitemid 33675741)
45. Yorimitsu T, Klionsky DJ. 2005. Atg11 links cargo to the vesicleforming machinery in the cytoplasm to vacuole targeting pathway. Mol Biol Cell 16: 1593-1605. (Pubitemid 40471933)
46. Yuan D, Shen V. 1975. Stability of ribosomal and transfer ribonucleic acid in Escherichia coli B/r after treatment with ethylenedinitrilotetraacetic acid and rifampicin. J Bacteriol 122: 425-432.
47. Zundel MA, Basturea GN, Deutscher MP. 2009. Initiation of ribosome degradation during starvation in Escherichia coli. RNA 15: 977-983.