Complete genome sequence of Gallibacterium anatis strain UMN179, isolated from a laying hen with peritonitis

Journal of Bacteriology

Volumn 193, Issue 14, 2011, Pages 3676-3677

  Johnson, Timothy J ^a   Fernandez Alarcon, Claudia ^a   Bojesen, Anders Miki ^b   Nolan, Lisa K ^c   Trampel, Darrell W ^c   Seemann, Torsten ^d  

^a UNIVERSITY OF MINNESOTA   (United States)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

^c IOWA STATE UNIVERSITY   (United States)

^d MONASH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL TOXIN; METALLOPROTEINASE; RIBOSOME RNA; TRANSFER RNA;

ANIMAL DISEASE; BACTERIAL CHROMOSOME; BACTERIAL GENOME; BACTERIAL VIRULENCE; BACTERIUM ISOLATE; CHROMOSOME STRUCTURE; CODON; EGG LAYING; GALLIBACTERIUM ANATIS; GENE FUNCTION; GENE LIBRARY; GENE SEQUENCE; GENE STRUCTURE; HEN; MOLECULAR GENETICS; NONHUMAN; NOTE; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PASTEURELLACEAE; PERITONITIS; PLASMID; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PYROSEQUENCING;

ANIMALS; BASE SEQUENCE; CHICKENS; FEMALE; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; PASTEURELLACEAE; PASTEURELLACEAE INFECTIONS; PERITONITIS; POULTRY DISEASES;

AVES; GALLIBACTERIUM ANATIS;

EID: 79960392907     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.05177-11     Document Type: Note

References (16)

1. Besemer, J., A. Lomsadze, and M. Borodovsky. 2001. GeneMarkS: a selftraining method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res. 29:2607-2618.
2. Bojesen, A. M., O. L. Nielsen, J. P. Christensen, and M. Bisgaard. 2004. In vivo studies of Gallibacterium anatis infection in chickens. Avian Pathol. 33:145-152.
3. Bojesen, A. M., S. S. Nielsen, and M. Bisgaard. 2003. Prevalence and transmission of haemolytic Gallibacterium species in chicken production systems with different biosecurity levels. Avian Pathol. 32:503-510.
4. Bojesen, A. M., and H. L. Shivaprasad. 2007. Genetic diversity of Gallibacterium isolates from California turkeys. Avian Pathol. 36:227-230.
5. Bojesen, A. M., M. Torpdahl, H. Christensen, J. E. Olsen, and M. Bisgaard. 2003. Genetic diversity of Gallibacterium anatis isolates from different chicken flocks. J. Clin. Microbiol. 41:2737-2740.
6. Bojesen, A. M., et al. 2011. Antimicrobial susceptibility and tetracyclineresistance determinant genotyping of Gallibacterium anatis. Vet. Microbiol. 148:105-110.
7. Christensen, H., M. Bisgaard, A. M. Bojesen, R. Mutters, and J. E. Olsen. 2003. Genetic relationships among avian isolates classified as Pasteurella haemolytica, 'Actinobacillus salpingitidis' or Pasteurella anatis with proposal of Gallibacterium anatis gen. nov., comb. nov. and description of additional genomospecies within Gallibacterium gen. nov. Int. J. Sys. Evol. Microbiol. 53:275-287.
8. Finn, R. D., et al. 2010. The Pfam protein families database. Nucleic Acids Res. 38:D211-D222.
9. Garcia-Gomez, E., et al. 2005. Gallibacterium anatis-secreted metalloproteases degrade chicken IgG. Avian Pathol. 34:426-429.
10. Johnson, L. S., S. R. Eddy, and E. Portugaly. 2010. Hidden Markov model speed heuristic and iterative HMM search procedure. BMC Bioinformatics 11:431.
11. Kristensen, B. M., D. Frees, and A. M. Bojesen. 2010. GtxA from Gallibacterium anatis, a cytolytic RTX-toxin with a novel domain organisation. Vet. Res. 41:25.
12. Lagesen, K., et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
13. Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
14. Marchler-Bauer, A., et al. 2011. CDD: a conserved domain database for the functional annotation of proteins. Nucleic Acids Res. 39:D225-D229.
15. Margulies, M., et al. 2005. Genome sequencing in microfabricated highdensity picolitre reactors. Nature 437:376-380.
16. Neubauer, C., M. De Souza-Pilz, A. M. Bojesen, M. Bisgaard, and M. Hess. 2009. Tissue distribution of haemolytic Gallibacterium anatis isolates in laying birds with reproductive disorders. Avian Pathol. 38:1-7.