Modulation of chromatin modifying factors' gene expression in embryonic and induced pluripotent stem cells

Biochemical and Biophysical Research Communications

Volumn 410, Issue 4, 2011, Pages 816-822

  Luzzani, Carlos ^a   Solari, Claudia ^a   Losino, Noelia ^a   Ariel, Waisman ^a   Romorini, Leonardo ^b   Bluguermann, Carolina ^b   Sevlever, Gustavo ^b   Barañao, Lino ^a   Miriuka, Santiago ^b   Guberman, Alejandra ^a  

^a UNIVERSIDAD DE BUENOS AIRES   (Argentina)

^b FLENI   (Argentina)

Author keywords

Chromatin modifying factors; Differentiation; Embryonic stem cells; Induced pluripotent stem cells

Indexed keywords

BMI1 PROTEIN; CELL PROTEIN; HISTONE DEACETYLASE; HISTONE DEACETYLASE 10; HISTONE DEACETYLASE 2; HISTONE DEACETYLASE 3; HISTONE DEACETYLASE 5; PROTEIN ATF7IP; PROTEIN GCN512; PROTEIN GTF3C3; PROTEIN JARID2; PROTEIN MYST2; PROTEIN SUV39H2; PROTEIN TAF15; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CELL DIFFERENTIATION; CHROMATIN ASSEMBLY AND DISASSEMBLY; EMBRYONIC STEM CELL; GENE EXPRESSION; HUMAN; HUMAN CELL; MOUSE; NONHUMAN; PLURIPOTENT STEM CELL; PRIORITY JOURNAL; PROTEIN EXPRESSION;

ANIMALS; CELL LINE; CHROMATIN; CHROMATIN IMMUNOPRECIPITATION; EMBRYONIC STEM CELLS; GENE EXPRESSION REGULATION; HUMANS; INDUCED PLURIPOTENT STEM CELLS; MICE; TRANSCRIPTION FACTORS;

EID: 79960333291     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2011.06.070     Document Type: Article

References (33)

1. Orkin S.H. Chipping away at the embryonic stem cell network. Cell 2005, 122:828-830.
2. Takahashi K., Tanabe K., Ohnuki M., Narita M., Ichisaka T., Tomoda K., Yamanaka S. Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 2007, 131:861-872.
3. Takahashi K., Yamanaka S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 2006, 126:663-676.
4. Yamanaka S. A fresh look at iPS cells. Cell 2009, 137:13-17.
5. de la Serna I.L., Ohkawa Y., Imbalzano A.N. Chromatin remodelling in mammalian differentiation: lessons from ATP-dependent remodellers. Nat. Rev. Genet. 2006, 7:461-473.
6. Surani M.A., Hayashi K., Hajkova P. Genetic and epigenetic regulators of pluripotency. Cell 2007, 128:747-762.
7. Kim J., Chu J., Shen X., Wang J., Orkin S.H. An extended transcriptional network for pluripotency of embryonic stem cells. Cell 2008, 132:1049-1061.
8. Losino N., Luzzani C., Solari C., Boffi J., Tisserand M.L., Sevlever G., Baranao L., Guberman A. Maintenance of murine embryonic stem cells' self-renewal and pluripotency with increase in proliferation rate by a bovine granulosa cell line-conditioned medium. Stem Cells Dev. 2011, 10.1089/scd.2010.0336.
9. Scassa M.E., de Giusti C.J., Questa M., Pretre G., Richardson G.A., Bluguermann C., Romorini L., Ferrer M.F., Sevlever G.E., Miriuka S.G., Gomez R.M. Human embryonic stem cells and derived contractile embryoid bodies are susceptible to Coxsakievirus B infection and respond to interferon Ibeta treatment. Stem Cell Res. 2011, 6:13-22.
10. Sommer C.A., Stadtfeld M., Murphy G.J., Hochedlinger K., Kotton D.N., Mostoslavsky G. Induced pluripotent stem cell generation using a single lentiviral stem cell cassette. Stem Cells 2009, 27:543-549.
11. Solari C., Losino N., Luzzani C., Waisman A., Bluguermann C., Questa M., Sevlever G., Miriuka S., Baranao L., Guberman A. Induced pluripotent stem cells' self-renewal pluripotency is maintained by a bovine granulosa cell line-conditioned medium. Biochem. Biophys. Res. Commun. 2011, 410:252-257.
12. Meissner A. Epigenetic modifications in pluripotent and differentiated cells. Nat. Biotechnol. 2011, 28:1079-1088.
13. Mattout A., Meshorer E. Chromatin plasticity and genome organization in pluripotent embryonic stem cells. Curr. Opin. Cell Biol. 2010, 22:334-341.
14. Liang J., Wan M., Zhang Y., Gu P., Xin H., Jung S.Y., Qin J., Wong J., Cooney A.J., Liu D., Songyang Z. Nanog and Oct4 associate with unique transcriptional repression complexes in embryonic stem cells. Nat. Cell Biol. 2008, 10:731-739.
15. Ho L., Ronan J.L., Wu J., Staahl B.T., Chen L., Kuo A., Lessard J., Nesvizhskii A.I., Ranish J., Crabtree G.R. An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency. Proc. Natl. Acad. Sci. USA 2009, 106:5181-5186.
16. Ura H., Usuda M., Kinoshita K., Sun C., Mori K., Akagi T., Matsuda T., Koide H., Yokota T. STAT3 and Oct-3/4 control histone modification through induction of Eed in embryonic stem cells. J. Biol. Chem. 2008, 283:9713-9723.
17. Creyghton M.P., Cheng A.W., Welstead G.G., Kooistra T., Carey B.W., Steine E.J., Hanna J., Lodato M.A., Frampton G.M., Sharp P.A., Boyer L.A., Young R.A., Jaenisch R. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl. Acad. Sci. USA 2010, 107:21931-21936.
18. Krejci J., Uhlirova R., Galiova G., Kozubek S., Smigova J., Bartova E. Genome-wide reduction in H3K9 acetylation during human embryonic stem cell differentiation. J. Cell Physiol. 2009, 219:677-687.
19. Fazzio T.G., Panning B. Control of embryonic stem cell identity by nucleosome remodeling enzymes. Curr. Opin. Genet. Dev. 2010, 20:500-504.
20. Zhang Z., Jones A., Sun C.W., Li C., Chang C.W., Joo H.Y., Dai Q., Mysliwiec M.R., Wu L.C., Guo Y., Yang W., Liu K., Pawlik K.M., Erdjument-Bromage H., Tempst P., Lee Y., Min J., Townes T.M., Wang H. PRC2 Complexes with JARID2. and esPRC2p48 in ES cells to modulate ES Cell pluripotency and somatic cell reprogramming Stem Cells. 2010, 10.1002/stem.578.
21. Pasini D., Cloos P.A., Walfridsson J., Olsson L., Bukowski J.P., Johansen J.V., Bak M., Tommerup N., Rappsilber J., Helin K. JARID2 regulates binding of the Polycomb repressive complex 2 to target genes in ES cells. Nature 2010, 464:306-310.
22. Bilodeau S., Kagey M.H., Frampton G.M., Rahl P.B., Young R.A. SetDB1 contributes to repression of genes encoding developmental regulators and maintenance of ES cell state. Genes Dev. 2009, 23:2484-2489.
23. Martens J.H., O'Sullivan R.J., Braunschweig U., Opravil S., Radolf M., Steinlein P., Jenuwein T. The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J. 2005, 24:800-812.
24. Ding X., Lin Q., Ensenat-Waser R., Rose-John S., Zenke M. Polycomb group protein Bmi1 promotes hematopoietic cell development from ES cells. Stem Cells Dev. 2011, 10.1089/scd.2010.0539.
25. Oguro H., Iwama A., Morita Y., Kamijo T., van Lohuizen M., Nakauchi H. Differential impact of Ink4a and Arf on hematopoietic stem cells and their bone marrow microenvironment in Bmi1-deficient mice. J. Exp. Med. 2006, 203:2247-2253.
26. Bruggeman S.W., Valk-Lingbeek M.E., van der Stoop P.P., Jacobs J.J., Kieboom K., Tanger E., Hulsman D., Leung C., Arsenijevic Y., Marino S., van Lohuizen M. Ink4a and Arf differentially affect cell proliferation and neural stem cell self-renewal in Bmi1-deficient mice. Genes Dev. 2005, 19:1438-1443.
27. Jacobs J.J., Kieboom K., Marino S., DePinho R.A., van Lohuizen M. The oncogene and Polycomb-group gene bmi-1 regulates cell proliferation and senescence through the ink4a locus. Nature 1999, 397:164-168.
28. van der Lugt N.M., Domen J., Linders K., van Roon M., Robanus-Maandag E., te Riele H., van der Valk M., Deschamps J., Sofroniew M., van Lohuizen M., et al. Posterior transformation, neurological abnormalities, and severe hematopoietic defects in mice with a targeted deletion of the bmi-1 proto-oncogene. Genes Dev. 1994, 8:757-769.
29. Chagraoui J., Hebert J., Girard S., Sauvageau G. An anticlastogenic function for the Polycomb Group gene Bmi1. Proc. Natl. Acad. Sci. USA 2011, 108:5284-5289.
30. Kueh A.J., Dixon M.P., Voss A.K., Thomas T. HBO1 is required for H3K14 acetylation and normal transcriptional activity during embryonic development. Mol. Cell Biol. 2011, 31:845-860.
31. E. Dolgin, Flaw in induced-stem-cell model, Nature, 470, 13.
32. O.M. Dovey, C.T. Foster, S.M. Cowley, Histone deacetylase 1 (HDAC1), but not HDAC2, controls embryonic stem cell differentiation, Proc. Natl. Acad. Sci. USA, 107, 8242-8247.
33. Taplick J., Kurtev V., Kroboth K., Posch M., Lechner T., Seiser C. Homo-oligomerisation and nuclear localisation of mouse histone deacetylase 1. J. Mol. Biol. 2001, 308:27-38.