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Volumn 6, Issue 7, 2011, Pages

Prediction of Drought-Resistant genes in Arabidopsis thaliana using SVM-RFE

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; BASIC HELIX LOOP HELIX TRANSCRIPTION FACTOR; BENZODIAZEPINE RECEPTOR; DEFENSIN; PHOSPHOPROTEIN PHOSPHATASE; PHOSPHOPROTEIN PHOSPHATASE 2C; RAB PROTEIN; RIBONUCLEASE; UNCLASSIFIED DRUG; WATER;

EID: 79960325818     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0021750     Document Type: Article
Times cited : (51)

References (31)
  • 1
    • 17044385046 scopus 로고    scopus 로고
    • Recent advances in engineering plant tolerance to abiotic stress: achievements and limitations
    • Vinocur B, Altman A, (2005) Recent advances in engineering plant tolerance to abiotic stress: achievements and limitations. Current Opinion in Biotechnology 16 (2): 123-132.
    • (2005) Current Opinion in Biotechnology , vol.16 , Issue.2 , pp. 123-132
    • Vinocur, B.1    Altman, A.2
  • 4
    • 33751014852 scopus 로고    scopus 로고
    • Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana
    • Kankainen M, Brader G, Törönen P, Palva ET, Holm L, (2006) Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana. Nucleic Acids Res 34 (18): e124.
    • (2006) Nucleic Acids Res , vol.34 , Issue.18
    • Kankainen, M.1    Brader, G.2    Törönen, P.3    Palva, E.T.4    Holm, L.5
  • 5
    • 25144457599 scopus 로고    scopus 로고
    • Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana
    • Zhang W, Ruan J, Ho TH, You Y, Yu T, et al. (2005) Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana. Bioinformatics 21 (14): 3074-3081.
    • (2005) Bioinformatics , vol.21 , Issue.14 , pp. 3074-3081
    • Zhang, W.1    Ruan, J.2    Ho, T.H.3    You, Y.4    Yu, T.5
  • 6
    • 35748932917 scopus 로고    scopus 로고
    • A review of feature selection techniques in bioinformatics
    • Saeys Y, Inza I, Larranaga P, (2007) A review of feature selection techniques in bioinformatics. Bioinformatics 23 (19): 2507-2517.
    • (2007) Bioinformatics , vol.23 , Issue.19 , pp. 2507-2517
    • Saeys, Y.1    Inza, I.2    Larranaga, P.3
  • 7
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using support vector machines
    • Guyon I, Weston J, Barnhill S, Vapnik V, (2002) Gene selection for cancer classification using support vector machines. Machine Learning 46 (1-3): 389-422.
    • (2002) Machine Learning , vol.46 , Issue.1-3 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 8
    • 77949447779 scopus 로고    scopus 로고
    • A study of health effects of long-distance ocean voyages on seamen using a data classification approach
    • Lu Y, Gao Y, Cao Z, Cui J, Dong Z, et al. (2010) A study of health effects of long-distance ocean voyages on seamen using a data classification approach. BMC Medical Informatics and Decision Making 10: 13.
    • (2010) BMC Medical Informatics and Decision Making , vol.10 , pp. 13
    • Lu, Y.1    Gao, Y.2    Cao, Z.3    Cui, J.4    Dong, Z.5
  • 9
    • 33947324308 scopus 로고    scopus 로고
    • Improving the performance of SVM-RFE to select genes in microarray data
    • Ding Y, Wilkins D, (2006) Improving the performance of SVM-RFE to select genes in microarray data. BMC Bioinformatics 7 (Suppl 2): S12.
    • (2006) BMC Bioinformatics , vol.7 , Issue.SUPPL. 2
    • Ding, Y.1    Wilkins, D.2
  • 10
    • 34249855141 scopus 로고    scopus 로고
    • MSVM-RFE: extensions of SVM-RFE for multiclass gene selection on DNA microarray data
    • Zhou X, Tuck DP, (2007) MSVM-RFE: extensions of SVM-RFE for multiclass gene selection on DNA microarray data. Bioinformatics 23 (9): 1106-1114.
    • (2007) Bioinformatics , vol.23 , Issue.9 , pp. 1106-1114
    • Zhou, X.1    Tuck, D.P.2
  • 11
    • 77955886691 scopus 로고    scopus 로고
    • Integration of pathway knowledge into a reweighted recursive feature elimination approach for risk stratification of cancer patients
    • Johannes M, Brase JC, Fröhlich H, Gade S, Gehrmann M, et al. (2010) Integration of pathway knowledge into a reweighted recursive feature elimination approach for risk stratification of cancer patients. Bioinformatics 26 (17): 2136-2144.
    • (2010) Bioinformatics , vol.26 , Issue.17 , pp. 2136-2144
    • Johannes, M.1    Brase, J.C.2    Fröhlich, H.3    Gade, S.4    Gehrmann, M.5
  • 12
    • 71749108850 scopus 로고    scopus 로고
    • Classification and biomarker identification using gene network modules and support vector machines
    • Yousef M, Ketany M, Manevitz L, Showe LC, Showe MK, (2009) Classification and biomarker identification using gene network modules and support vector machines. BMC Bioinformatics 10: 337.
    • (2009) BMC Bioinformatics , vol.10 , pp. 337
    • Yousef, M.1    Ketany, M.2    Manevitz, L.3    Showe, L.C.4    Showe, M.K.5
  • 14
    • 34547144147 scopus 로고    scopus 로고
    • Plastic and adaptive gene expression patterns associated with temperature stress in Arabidopsis thaliana
    • Swindell W, Huebner M, Weber A, (2007) Plastic and adaptive gene expression patterns associated with temperature stress in Arabidopsis thaliana. Heredity 99: 143-150.
    • (2007) Heredity , vol.99 , pp. 143-150
    • Swindell, W.1    Huebner, M.2    Weber, A.3
  • 15
    • 4544282106 scopus 로고    scopus 로고
    • Genetic analysis of agronomic and quality traits in mustard (Brassica juncea)
    • Lionneton E, Aubert G, Ochatt S, Merah O, (2004) Genetic analysis of agronomic and quality traits in mustard (Brassica juncea). Theor Appl Genet 109: 792-799.
    • (2004) Theor Appl Genet , vol.109 , pp. 792-799
    • Lionneton, E.1    Aubert, G.2    Ochatt, S.3    Merah, O.4
  • 16
    • 47649125318 scopus 로고    scopus 로고
    • Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
    • Maury LL, Marguerat S, Bähler J, (2008) Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nature Reviews Genetics 9: 583-593.
    • (2008) Nature Reviews Genetics , vol.9 , pp. 583-593
    • Maury, L.L.1    Marguerat, S.2    Bähler, J.3
  • 17
    • 57749117254 scopus 로고    scopus 로고
    • Transgenic Arabidopsis plants expressing the type 1 inositol 5-phosphatase exhibit increased drought tolerance and altered abscisic acid signaling
    • Perera IY, Hung CY, Moore CD, Stevenson-Paulik J, Boss WF, (2008) Transgenic Arabidopsis plants expressing the type 1 inositol 5-phosphatase exhibit increased drought tolerance and altered abscisic acid signaling. Plant Cell 20 (10): 2876-2893.
    • (2008) Plant Cell , vol.20 , Issue.10 , pp. 2876-2893
    • Perera, I.Y.1    Hung, C.Y.2    Moore, C.D.3    Stevenson-Paulik, J.4    Boss, W.F.5
  • 18
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry RA, Hobbs B, Collin F, Beazer YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4 (2): 249-264.
    • (2003) Biostatistics , vol.4 , Issue.2 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3    Beazer, Y.D.4    Antonellis, K.J.5
  • 19
    • 0034948896 scopus 로고    scopus 로고
    • A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes
    • Baldi P, Long AD, (2001) A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics 17 (6): 509-519.
    • (2001) Bioinformatics , vol.17 , Issue.6 , pp. 509-519
    • Baldi, P.1    Long, A.D.2
  • 21
    • 0003710380 scopus 로고    scopus 로고
    • LIBSVM: a library for support vector machines
    • Software available at
    • Chang CC, Lin CJ, (2001) LIBSVM: a library for support vector machines. Software available athttp://www.csie.ntu.edu.tw/~cjlin/libsvm.
    • (2001)
    • Chang, C.C.1    Lin, C.J.2
  • 22
    • 21844440579 scopus 로고    scopus 로고
    • Core Vector Machines: Fast SVM Training on Very Large Data Sets
    • Tsang IW, Kwok JT, Cheung PM, (2005) Core Vector Machines: Fast SVM Training on Very Large Data Sets. Machine Learning Research 6: 363-392.
    • (2005) Machine Learning Research , vol.6 , pp. 363-392
    • Tsang, I.W.1    Kwok, J.T.2    Cheung, P.M.3
  • 23
    • 32644481938 scopus 로고    scopus 로고
    • Genome-Wide Identification and Testing of Superior Reference Genes for Transcript Normalization in Arabidopsis
    • Czechowski T, Stitt M, Altmann T, KUdvardi M, Scheible W, (2005) Genome-Wide Identification and Testing of Superior Reference Genes for Transcript Normalization in Arabidopsis. Plant Physiology 139 (1): 5-17.
    • (2005) Plant Physiology , vol.139 , Issue.1 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    KUdvardi, M.4    Scheible, W.5
  • 24
    • 0036180890 scopus 로고    scopus 로고
    • Drought-and desiccation-induced modulation of gene expression in plants
    • Ramanjulu S, Bartels D, (2002) Drought-and desiccation-induced modulation of gene expression in plants. Plant, Cell and Environment 25 (2): 141-151.
    • (2002) Plant, Cell and Environment , vol.25 , Issue.2 , pp. 141-151
    • Ramanjulu, S.1    Bartels, D.2
  • 25
    • 33344455352 scopus 로고    scopus 로고
    • Osmotic stress changes carbohydrate partitioning and fructose-2, 6-bisphosphate metabolism in barley leaves
    • Villadsen D, Rung JH, Nielsen TH, (2005) Osmotic stress changes carbohydrate partitioning and fructose-2, 6-bisphosphate metabolism in barley leaves. Functional Plant Biology 32 (11): 1033-1043.
    • (2005) Functional Plant Biology , vol.32 , Issue.11 , pp. 1033-1043
    • Villadsen, D.1    Rung, J.H.2    Nielsen, T.H.3
  • 26
    • 33344460036 scopus 로고    scopus 로고
    • Understanding regulatory networks and engineering for enhanced drought tolerance in plants
    • Valliyodan B, Nguyen HT, (2006) Understanding regulatory networks and engineering for enhanced drought tolerance in plants. Current Opinion in Plant Biology 9 (2): 189-195.
    • (2006) Current Opinion in Plant Biology , vol.9 , Issue.2 , pp. 189-195
    • Valliyodan, B.1    Nguyen, H.T.2
  • 27
    • 44949146335 scopus 로고    scopus 로고
    • Ectopic expression of Expansin3 or Expansinβ1 causes enhanced hormone and salt stress sensitivity in Arabidopsis
    • Kwon YR, Lee HJ, Kim KH, Hong SW, Lee SJ, et al. (2008) Ectopic expression of Expansin3 or Expansinβ1 causes enhanced hormone and salt stress sensitivity in Arabidopsis. Biotechnology Letters 30 (7): 1281-1288.
    • (2008) Biotechnology Letters , vol.30 , Issue.7 , pp. 1281-1288
    • Kwon, Y.R.1    Lee, H.J.2    Kim, K.H.3    Hong, S.W.4    Lee, S.J.5
  • 28
    • 44949136442 scopus 로고    scopus 로고
    • Enhanced tolerance to drought stress in transgenic tobacco plants overexpressing VTE1 for increased tocopherol production from Arabidopsis thaliana
    • Liu X, Hua X, Guo J, Qi D, Wang L, et al. (2008) Enhanced tolerance to drought stress in transgenic tobacco plants overexpressing VTE1 for increased tocopherol production from Arabidopsis thaliana. Biotechnology Letters 30 (7): 1275-1280.
    • (2008) Biotechnology Letters , vol.30 , Issue.7 , pp. 1275-1280
    • Liu, X.1    Hua, X.2    Guo, J.3    Qi, D.4    Wang, L.5
  • 29
    • 16544393288 scopus 로고    scopus 로고
    • Crosstalk in the responses to abiotic and biotic stresses in Arabidopsis: analysis of gene expression in cytochrome P450 gene superfamily by cDNA microarray
    • Narusaka Y, Narusaka M, Seki M, Umezawa T, Ishida J, et al. (2004) Crosstalk in the responses to abiotic and biotic stresses in Arabidopsis: analysis of gene expression in cytochrome P450 gene superfamily by cDNA microarray. Plant Mol Biol 55 (3): 327-342.
    • (2004) Plant Mol Biol , vol.55 , Issue.3 , pp. 327-342
    • Narusaka, Y.1    Narusaka, M.2    Seki, M.3    Umezawa, T.4    Ishida, J.5
  • 30
    • 49449105606 scopus 로고    scopus 로고
    • The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors
    • Huang DQ, Wu WR, Abrams SR, Cutler AJ, (2008) The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors. Journal of Experimental Botany 59 (11): 2991-3007.
    • (2008) Journal of Experimental Botany , vol.59 , Issue.11 , pp. 2991-3007
    • Huang, D.Q.1    Wu, W.R.2    Abrams, S.R.3    Cutler, A.J.4
  • 31
    • 77956145288 scopus 로고    scopus 로고
    • Random forests: an important feature genes selection method of tumor
    • Li J, Gao Z, (2009) Random forests: an important feature genes selection method of tumor. Acta Biophys Sin 25: 51-56.
    • (2009) Acta Biophys Sin , vol.25 , pp. 51-56
    • Li, J.1    Gao, Z.2


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