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Volumn 77, Issue 2, 2011, Pages 438-448

Detection and isolation of chloromethane-degrading bacteria from the Arabidopsis thaliana phyllosphere, and characterization of chloromethane utilization genes

Author keywords

Chloromethane; Cmu genes; Methyl halide metabolism; Phyllosphere

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; METHYL CHLORIDE; METHYLTRANSFERASE; RNA 16S;

EID: 79960201228     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2011.01125.x     Document Type: Article
Times cited : (47)

References (44)
  • 1
    • 0033746313 scopus 로고    scopus 로고
    • The ecology and biogeography of microorganisms on plant surfaces
    • Andrews JH & Harris RF (2000) The ecology and biogeography of microorganisms on plant surfaces. Annu Rev Phytopathol 38: 145-180.
    • (2000) Annu Rev Phytopathol , vol.38 , pp. 145-180
    • Andrews, J.H.1    Harris, R.F.2
  • 2
    • 0028957167 scopus 로고
    • Purification and characterization of a novel methyltransferase responsible for biosynthesis of halomethanes and methanethiol in Brassica oleracea
    • Attieh JM, Hanson AD & Saini HS (1995) Purification and characterization of a novel methyltransferase responsible for biosynthesis of halomethanes and methanethiol in Brassica oleracea. J Biol Chem 270: 9250-9257.
    • (1995) J Biol Chem , vol.270 , pp. 9250-9257
    • Attieh, J.M.1    Hanson, A.D.2    Saini, H.S.3
  • 3
    • 0034663361 scopus 로고    scopus 로고
    • Purification and properties of multiple isoforms of a novel thiol methyltransferase involved in the production of volatile sulfur compounds from Brassica oleracea
    • Attieh JM, Sparace S & Saini HS (2000) Purification and properties of multiple isoforms of a novel thiol methyltransferase involved in the production of volatile sulfur compounds from Brassica oleracea. Arch Biochem Biophys 380: 257-266.
    • (2000) Arch Biochem Biophys , vol.380 , pp. 257-266
    • Attieh, J.M.1    Sparace, S.2    Saini, H.S.3
  • 4
    • 23944462906 scopus 로고    scopus 로고
    • Use of DNA-stable isotope probing and functional gene probes to investigate the diversity of methyl chloride-utilizing bacteria in soil
    • Borodina E, Cox M, McDonald IR & Murrell J (2005) Use of DNA-stable isotope probing and functional gene probes to investigate the diversity of methyl chloride-utilizing bacteria in soil. Environ Microbiol 7: 1318-1328.
    • (2005) Environ Microbiol , vol.7 , pp. 1318-1328
    • Borodina, E.1    Cox, M.2    McDonald, I.R.3    Murrell, J.4
  • 5
    • 79960190940 scopus 로고    scopus 로고
    • Halogenated long-lived compounds, scientific assessment of ozone depletion: 2006. Global Ozone Research and Monitoring Project 10, Report No. 50. World Meteorological Organization, Geneva.
    • Clerbaux C, Cunnold DM, Anderson J et al. (2007) Halogenated long-lived compounds, scientific assessment of ozone depletion: 2006. Global Ozone Research and Monitoring Project 10, Report No. 50. World Meteorological Organization, Geneva.
    • (2007)
    • Clerbaux, C.1    Cunnold, D.M.2    Anderson, J.3
  • 6
    • 0032850676 scopus 로고    scopus 로고
    • Halomethane:bisulfide/halide ion methyltransferase, an unusual corrinoid enzyme of environmental significance isolated from an aerobic methylotroph using chloromethane as the sole carbon source
    • Coulter C, Hamilton JTG, McRoberts WC, Kulakov L, Larkin MJ & Harper DB (1999) Halomethane:bisulfide/halide ion methyltransferase, an unusual corrinoid enzyme of environmental significance isolated from an aerobic methylotroph using chloromethane as the sole carbon source. Appl Environ Microb 65: 4301-4312.
    • (1999) Appl Environ Microb , vol.65 , pp. 4301-4312
    • Coulter, C.1    Hamilton, J.T.G.2    McRoberts, W.C.3    Kulakov, L.4    Larkin, M.J.5    Harper, D.B.6
  • 8
    • 0030246889 scopus 로고    scopus 로고
    • Isolation and initial characterization of aerobic chloromethane-utilizing bacteria
    • Doronina N, Sokolov A & Trotsenko Y (1996) Isolation and initial characterization of aerobic chloromethane-utilizing bacteria. FEMS Microbiol Lett 142: 179-183.
    • (1996) FEMS Microbiol Lett , vol.142 , pp. 179-183
    • Doronina, N.1    Sokolov, A.2    Trotsenko, Y.3
  • 9
    • 4143118892 scopus 로고    scopus 로고
    • Biodegradation of chloromethane by Pseudomonas aeruginosa strain NB1 under nitrate-reducing and aerobic conditions
    • Freedman D, Swamy M, Bell N & Verce M (2004) Biodegradation of chloromethane by Pseudomonas aeruginosa strain NB1 under nitrate-reducing and aerobic conditions. Appl Environ Microb 70: 4629-4634.
    • (2004) Appl Environ Microb , vol.70 , pp. 4629-4634
    • Freedman, D.1    Swamy, M.2    Bell, N.3    Verce, M.4
  • 11
    • 10744229659 scopus 로고    scopus 로고
    • Comprehensive transposon mutant library of Pseudomonas aeruginosa
    • Jacobs MA, Alwood A, Thaipisuttikul I et al. (2003) Comprehensive transposon mutant library of Pseudomonas aeruginosa. P Natl Acad Sci USA 100: 14339-14344.
    • (2003) P Natl Acad Sci USA , vol.100 , pp. 14339-14344
    • Jacobs, M.A.1    Alwood, A.2    Thaipisuttikul, I.3
  • 12
    • 1842686323 scopus 로고    scopus 로고
    • Thiol-tolerant assay for quantitative colorimetric determination of chloride released from whole-cell biodehalogenations
    • Jörg G & Bertau M (2004) Thiol-tolerant assay for quantitative colorimetric determination of chloride released from whole-cell biodehalogenations. Anal Biochem 328: 22-28.
    • (2004) Anal Biochem , vol.328 , pp. 22-28
    • Jörg, G.1    Bertau, M.2
  • 13
    • 0030614144 scopus 로고    scopus 로고
    • Microbial population dynamics on leaves
    • Kinkel L (1997) Microbial population dynamics on leaves. Annu Rev Phytopathol 35: 327-347.
    • (1997) Annu Rev Phytopathol , vol.35 , pp. 327-347
    • Kinkel, L.1
  • 14
    • 42049108808 scopus 로고    scopus 로고
    • Cultivation-independent characterization of Methylobacterium populations in the plant phyllosphere by automated ribosomal intergenic spacer analysis
    • Knief C, Frances L, Cantet F & Vorholt JA (2008) Cultivation-independent characterization of Methylobacterium populations in the plant phyllosphere by automated ribosomal intergenic spacer analysis. Appl Environ Microb 74: 2218-2228.
    • (2008) Appl Environ Microb , vol.74 , pp. 2218-2228
    • Knief, C.1    Frances, L.2    Cantet, F.3    Vorholt, J.A.4
  • 15
    • 77952672792 scopus 로고    scopus 로고
    • Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere
    • Knief C, Ramette A, Frances L, Alonso-Blanco C & Vorholt JA (2010) Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere. ISME J 4: 719-728.
    • (2010) ISME J , vol.4 , pp. 719-728
    • Knief, C.1    Ramette, A.2    Frances, L.3    Alonso-Blanco, C.4    Vorholt, J.A.5
  • 16
    • 0035943116 scopus 로고    scopus 로고
    • Methyl chloride utilising bacteria are ubiquitous in the natural environment
    • McAnulla C, McDonald IR & Murrell J (2001a) Methyl chloride utilising bacteria are ubiquitous in the natural environment. FEMS Microbiol Lett 201: 151-155.
    • (2001) FEMS Microbiol Lett , vol.201 , pp. 151-155
    • McAnulla, C.1    McDonald, I.R.2    Murrell, J.3
  • 19
    • 0030724363 scopus 로고    scopus 로고
    • Bacterial oxidation of methyl bromide in fumigated agricultural soils
    • Miller L, Connell G, Guidetti J & Oremland R (1997) Bacterial oxidation of methyl bromide in fumigated agricultural soils. Appl Environ Microb 63: 4346-4354.
    • (1997) Appl Environ Microb , vol.63 , pp. 4346-4354
    • Miller, L.1    Connell, G.2    Guidetti, J.3    Oremland, R.4
  • 21
    • 0019349159 scopus 로고
    • The biology of Hyphomicrobium and other prosthecate budding bacteria
    • Moore RL (1981) The biology of Hyphomicrobium and other prosthecate budding bacteria. Annu Rev Microbiol 35: 567-594.
    • (1981) Annu Rev Microbiol , vol.35 , pp. 567-594
    • Moore, R.L.1
  • 22
    • 67749099835 scopus 로고    scopus 로고
    • Arabidopsis harmless to ozone layer protein methylates a glucosinolate breakdown product and functions in resistance to Pseudomonas syringae pv. maculicola
    • Nagatoshi Y & Nakamura T (2009) Arabidopsis harmless to ozone layer protein methylates a glucosinolate breakdown product and functions in resistance to Pseudomonas syringae pv. maculicola. J Biol Chem 284: 19301-19309.
    • (2009) J Biol Chem , vol.284 , pp. 19301-19309
    • Nagatoshi, Y.1    Nakamura, T.2
  • 24
    • 0031857297 scopus 로고    scopus 로고
    • Phylogenetic analysis and intrageneric structure of the genus Hyphomicrobium and the related genus Filomicrobium
    • Rainey FA, Ward-Rainey N, Gliesche CG & Stackebrandt E (1998) Phylogenetic analysis and intrageneric structure of the genus Hyphomicrobium and the related genus Filomicrobium. Int J Syst Bacteriol 48: 635-663.
    • (1998) Int J Syst Bacteriol , vol.48 , pp. 635-663
    • Rainey, F.A.1    Ward-Rainey, N.2    Gliesche, C.G.3    Stackebrandt, E.4
  • 25
    • 53149131707 scopus 로고    scopus 로고
    • Genetic diversity and phylogeny of pink-pigmented facultative methylotrophic bacteria isolated from the phyllosphere of tropical crop plants
    • Raja P, Balachandar D & Sundaram S (2008) Genetic diversity and phylogeny of pink-pigmented facultative methylotrophic bacteria isolated from the phyllosphere of tropical crop plants. Biol Fert Soils 45: 45-53.
    • (2008) Biol Fert Soils , vol.45 , pp. 45-53
    • Raja, P.1    Balachandar, D.2    Sundaram, S.3
  • 26
    • 0142136094 scopus 로고    scopus 로고
    • Genetic control of methyl halide production in Arabidopsis
    • Rhew RC, Ostergaard L, Saltzman E & Yanofsky M (2003) Genetic control of methyl halide production in Arabidopsis. Curr Biol 13: 1809-1813.
    • (2003) Curr Biol , vol.13 , pp. 1809-1813
    • Rhew, R.C.1    Ostergaard, L.2    Saltzman, E.3    Yanofsky, M.4
  • 27
    • 48249083861 scopus 로고    scopus 로고
    • Stable carbon isotope ratio of methyl chloride emitted from glasshouse-grown tropical plants and its implication for the global methyl chloride budget
    • L08807.
    • Saito T & Yokouchi Y (2008) Stable carbon isotope ratio of methyl chloride emitted from glasshouse-grown tropical plants and its implication for the global methyl chloride budget. Geophys Res Lett 35: L08807.
    • (2008) Geophys Res Lett , vol.35
    • Saito, T.1    Yokouchi, Y.2
  • 28
    • 18944374389 scopus 로고    scopus 로고
    • Evidence for the presence of a CmuA methyltransferase pathway in novel marine methyl halide-oxidizing bacteria
    • Schäfer H, McDonald IR, Nightingale P & Murrell J (2005) Evidence for the presence of a CmuA methyltransferase pathway in novel marine methyl halide-oxidizing bacteria. Environ Microbiol 7: 839-852.
    • (2005) Environ Microbiol , vol.7 , pp. 839-852
    • Schäfer, H.1    McDonald, I.R.2    Nightingale, P.3    Murrell, J.4
  • 32
    • 0036280066 scopus 로고    scopus 로고
    • Chloromethane-induced genes define a third C-1 utilization pathway in Methylobacterium chloromethanicum CM4
    • Studer A, McAnulla C, Buchele R, Leisinger T & Vuilleumier S (2002) Chloromethane-induced genes define a third C-1 utilization pathway in Methylobacterium chloromethanicum CM4. J Bacteriol 184: 3476-3484.
    • (2002) J Bacteriol , vol.184 , pp. 3476-3484
    • Studer, A.1    McAnulla, C.2    Buchele, R.3    Leisinger, T.4    Vuilleumier, S.5
  • 33
    • 0033760479 scopus 로고    scopus 로고
    • Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays
    • Suzuki MT, Taylor LT & DeLong EF (2000) Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays. Appl Environ Microb 66: 4605-4614.
    • (2000) Appl Environ Microb , vol.66 , pp. 4605-4614
    • Suzuki, M.T.1    Taylor, L.T.2    DeLong, E.F.3
  • 34
    • 0026058830 scopus 로고
    • Isolation and characterization of a methyl chloride utilizing, strictly anaerobic bacterium
    • Traunecker J, Preuss A & Diekert G (1991) Isolation and characterization of a methyl chloride utilizing, strictly anaerobic bacterium. Arch Microbiol 156: 416-421.
    • (1991) Arch Microbiol , vol.156 , pp. 416-421
    • Traunecker, J.1    Preuss, A.2    Diekert, G.3
  • 35
    • 3543041898 scopus 로고    scopus 로고
    • The biology of methylobacteria capable of degrading halomethanes
    • Trotsenko Y & Doronina N (2003) The biology of methylobacteria capable of degrading halomethanes. Microbiology 72: 121-131.
    • (2003) Microbiology , vol.72 , pp. 121-131
    • Trotsenko, Y.1    Doronina, N.2
  • 36
    • 0001723546 scopus 로고    scopus 로고
    • Aerobic methylotrophic bacteria as phytosymbionts
    • Trotsenko Y, Ivanova E & Doronina N (2001) Aerobic methylotrophic bacteria as phytosymbionts. Microbiology 70: 623-632.
    • (2001) Microbiology , vol.70 , pp. 623-632
    • Trotsenko, Y.1    Ivanova, E.2    Doronina, N.3
  • 39
    • 0033551086 scopus 로고    scopus 로고
    • A corrinoid-dependent catabolic pathway for growth of a Methylobacterium strain with chloromethane
    • Vannelli T, Messmer M, Studer A, Vuilleumier S & Leisinger T (1999) A corrinoid-dependent catabolic pathway for growth of a Methylobacterium strain with chloromethane. P Natl Acad Sci USA 96: 4615-4620.
    • (1999) P Natl Acad Sci USA , vol.96 , pp. 4615-4620
    • Vannelli, T.1    Messmer, M.2    Studer, A.3    Vuilleumier, S.4    Leisinger, T.5
  • 41
    • 24944501696 scopus 로고    scopus 로고
    • Analysis of genes involved in methyl halide degradation in Aminobacter lissarensis CC495
    • Warner K, Larkin M, Harper DB, Murrell J & McDonald IR (2005) Analysis of genes involved in methyl halide degradation in Aminobacter lissarensis CC495. FEMS Microbiol Lett 251: 45-51.
    • (2005) FEMS Microbiol Lett , vol.251 , pp. 45-51
    • Warner, K.1    Larkin, M.2    Harper, D.B.3    Murrell, J.4    McDonald, I.R.5
  • 42
    • 0035320689 scopus 로고    scopus 로고
    • Identification of methyl halide-utilizing genes in the methyl bromide-utilizing bacterial strain IMB-1 suggests a high degree of conservation of methyl halide-specific genes in Gram-negative bacteria
    • Woodall CA, Warner KL, Oremland RS, Murrell JC & McDonald IR (2001) Identification of methyl halide-utilizing genes in the methyl bromide-utilizing bacterial strain IMB-1 suggests a high degree of conservation of methyl halide-specific genes in Gram-negative bacteria. Appl Environ Microb 67: 1959-1963.
    • (2001) Appl Environ Microb , vol.67 , pp. 1959-1963
    • Woodall, C.A.1    Warner, K.L.2    Oremland, R.S.3    Murrell, J.C.4    McDonald, I.R.5
  • 43
    • 14744300313 scopus 로고    scopus 로고
    • A three-dimensional global model study of atmospheric methyl chloride budget and distributions
    • Yoshida Y, Wang Y, Zeng T & Yantosca R (2004) A three-dimensional global model study of atmospheric methyl chloride budget and distributions. J Geophys Res 109: D24309.
    • (2004) J Geophys Res , vol.109
    • Yoshida, Y.1    Wang, Y.2    Zeng, T.3    Yantosca, R.4


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