Tumebacillus ginsengisoli sp. nov., isolated from soil of a ginseng field

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 7, 2011, Pages 1715-1719

  Baek, Sang Hoon ^a   Cui, Yingshun ^a   Kim, Sun Chang ^a   Cui, Chang Hao ^a   Yin, Chengri ^b   Lee, Sung Taik ^a   Im, Wan Taek ^a  

^a Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^b YANBIAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FATTY ACID; MENAQUINONE; QUINONE DERIVATIVE; FARNOQUINONE; RIBOSOME DNA; RNA 16S; VITAMIN MK 7;

ARTICLE; BACILLALES; BACTERIAL STRAIN; BACTERIUM ISOLATION; GINSENG; GRAM POSITIVE BACTERIUM; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TUMEBACILLUS GINSENGISOLI; ANALOGS AND DERIVATIVES; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; ENDOSPORE-FORMING RODS AND COCCI; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PANAX; SOUTH KOREA;

BACILLALES; BACTERIA (MICROORGANISMS); PANAX GINSENG;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GRAM-POSITIVE ENDOSPORE-FORMING RODS; MOLECULAR SEQUENCE DATA; PANAX; PHYLOGENY; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; VITAMIN K 2;

EID: 79960176666     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.023358-0     Document Type: Article

References (23)

1. Atlas, R. M. (1993). Handbook of Microbiological Media. Edited by L. C. Parks. Boca Raton, FL: CRC Press.
2. Buck, J. D. (1982). Nonstaining (KOH) method for determination of gram reactions of marine bacteria. Appl Environ Microbiol 44, 992-993.
3. Felsenstein, J. (1985). Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
4. Felsenstein, J. (1989). PHYLIP - phylogeny inference package (version 3.2). Cladistics 5, 164-166.
5. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
6. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
7. Hiraishi, A., Ueda, Y., Ishihara, J. & Mori, T. (1996). Comparative lipoquinone analysis of influent sewage and activated sludge by highperformance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42, 457-469.
8. Im, W.-T., Jung, H.-M., Cui, Y.-S., Liu, Q.-M., Zhang, S.-L. & Lee, S.-T. (2005). Cultivation of the three hundreds of bacterial species from soil of a ginseng field and mining the novel lineage bacteria. In Proceedings of the International Meeting of the Federation of Korean Microbiological Societies, abstract A035, p. 169. Seoul: Federation of Korean Microbiological Societies.
9. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
10. Kouker, G. & Jaeger, K.-E. (1987). Specific and sensitive plate assay for bacterial lipases. Appl Environ Microbiol 53, 211-213.
11. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
12. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
13. Moore, D. D. & Dowhan, D. (1995). Preparation and analysis of DNA. In Current Protocols in Molecular Biology, pp. 2-11. Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Wiley.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
16. Steven, B., Chen, M. Q., Greer, C. W., Whyte, L. G. & Niederberger, T. D. (2008). Tumebacillus permanentifrigoris gen. nov., sp. nov., an aerobic, spore-forming bacterium isolated from Canadian high Arctic permafrost. Int J Syst Evol Microbiol 58, 1497-1501.
17. Swindell, S. R. & Plasterer, T. N. (1997). SEQMAN. Contig assembly. Methods Mol Biol 70, 75-89.
18. Ten, L. N., Im, W.-T., Kim, M.-K., Kang, M.-S. & Lee, S.-T. (2004). Development of a plate technique for screening of polysaccharidedegrading microorganisms by using a mixture of insoluble chromogenic substrates. J Microbiol Methods 56, 375-382.
19. Ten, L. N., Jung, H.-M., Im, W. T., Yoo, S. A. & Lee, S.-T. (2008). Lysobacter daecheongensis sp. nov., isolated from sediment of stream near the Daechung dam in South Korea. J Microbiol 46, 519-524.
20. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
21. Tschech, A. & Pfennig, N. (1984). Growth yield increase linked to caffeate reduction in Acetobacterium woodii. Arch Microbiol 137, 163-167.
22. Widdel, F. & Bak, F. (1992). Gram-negative mesophilic sulfatereducing bacteria. In The Prokaryotes, 2nd edn, pp. 3352-3378. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
23. Widdel, F., Kohring, G. & Mayer, F. (1983). Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. III. Characterization of the filamentous gliding Desulfonema limicola gen. nov., sp. nov. and Desulfonema magnum sp. nov. Arch Microbiol 134, 286-294.