Halolamina pelagica gen. nov., sp. nov., a new member of the family Halobacteriaceae

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 7, 2011, Pages 1617-1621

  Cui, Heng Lin ^a   Gao, Xia ^a   Yang, Xin ^a   Xu, Xue Wei ^b  

^a JIANGSU UNIVERSITY   (China)

^b Ministry of Natural Resources of the People's Republic of China   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; GALACTOSYLMANNOSYLGLUCOSYL DIETHER; GLYCOLIPID; MAGNESIUM ION; MANNOSYLGLUCOSYL DIETHER; PHOSPHATIDIC ACID; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLGLYCEROL PHOSPHATE METHYL ESTER; PHOSPHATIDYLGLYCEROL SULFATE; RNA 16S; SODIUM CHLORIDE; SULFATED MANNOSYLGLUCOSYL DIETHER; UNCLASSIFIED DRUG; ARCHAEAL DNA; PHOSPHOLIPID;

ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CHINA; CYTOLYSIS; DNA DNA HYBRIDIZATION; HALOBACTERIALES; HALOLAMINA PELAGICA; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; TEMPERATURE; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; SALINITY;

ARCHAEA; HALOBACTERIACEAE; HALOBACULUM GOMORRENSE; NEGIBACTERIA;

BASE COMPOSITION; CHINA; DNA, ARCHAEAL; GLYCOLIPIDS; HALOBACTERIACEAE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SALINITY; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; WATER MICROBIOLOGY;

EID: 79960167783     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.026799-0     Document Type: Article

References (35)

1. Bardavid, R. E., Mana, L. & Oren, A. (2007). Haloplanus natans gen. nov., sp. nov., an extremely halophilic, gas-vacuolate archaeon isolated from Dead Sea-Red Sea water mixtures in experimental outdoor ponds. Int J Syst Evol Microbiol 57, 780-783.
2. Burns, D. G., Janssen, P. H., Itoh, T., Kamekura, M., Li, Z., Jensen, G., Rodríguez-Valera, F., Bolhuis, H. & Dyall-Smith, M. L. (2007). Haloquadratum walsbyi gen. nov., sp. nov., the square haloarchaeon of Walsby, isolated from saltern crystallizers in Australia and Spain. Int J Syst Evol Microbiol 57, 387-392.
3. Burns, D. G., Janssen, P. H., Itoh, T., Kamekura, M., Echigo, A. & Dyall-Smith, M. L. (2010). Halonotius pteroides gen. nov., sp. nov., an extremely halophilic archaeon recovered from a saltern crystallizer. Int J Syst Evol Microbiol 60, 1196-1199.
4. Castillo, A. M., Gutiérrez, M. C., Kamekura, M., Ma, Y.-H., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2006a). Halovivax asiaticus gen. nov., sp. nov., a novel extremely halophilic archaeon isolated from Inner Mongolia, China. Int J Syst Evol Microbiol 56, 765-770.
5. Castillo, A. M., Gutié rrez, M. C., Kamekura, M., Xue, Y.-F., Ma, Y.-H., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2006b). Halostagnicola larsenii gen. ov., sp. nov., an extremely halophilic archaeon from a saline lake in Inner Mongolia, China. Int J Syst Evol Microbiol 56, 1519-1524.
6. Cui, H.-L., Lin, Z.-Y., Dong, Y., Zhou, P.-J. & Liu, S.-J. (2007). Halorubrum litoreum sp. nov., an extremely halophilic archaeon from a solar saltern. Int J Syst Evol Microbiol 57, 2204-2206.
7. Cui, H.-L., Zhou, P.-J., Oren, A. & Liu, S.-J. (2009). Intraspecific polymorphism of 16S rRNA genes in two halophilic archaeal genera, Haloarcula and Halomicrobium. Extremophiles 13, 31-37.
8. Cui, H.-L., Gao, X., Sun, F.-F., Dong, Y., Xu, X.-W., Zhou, Y.-G., Liu, H.-C., Oren, A. & Zhou, P.-J. (2010a). Halogranum rubrum gen. nov., sp. nov., a halophilic archaeon isolated from a marine solar saltern. Int J Syst Evol Microbiol 60, 1366-1371.
9. Cui, H.-L., Gao, X., Li, X.-Y., Xu, X.-W., Zhou, Y.-G., Liu, H.-C. & Zhou, P.-J. (2010b). Haloplanus vescus sp. nov., an extremely halophilic archaeon from a marine solar saltern, and emended description of the genus Haloplanus. Int J Syst Evol Microbiol 60, 1824-1827.
10. Cui, H.-L., Li, X.-Y., Gao, X., Xu, X.-W., Zhou, Y.-G., Liu, H.-C., Oren, A. & Zhou, P.-J. (2010c). Halopelagius inordinatus gen. nov., sp. nov., a new member of the family Halobacteriaceae isolated from a marine solar saltern. Int J Syst Evol Microbiol 60, 2089-2093.
11. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
12. Dussault, H. P. (1955). An improved technique for staining red halophilic bacteria. J Bacteriol 70, 484-485.
13. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
14. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
15. Gonzalez, C., Gutierrez, C. & Ramirez, C. (1978). Halobacterium vallismortis sp. nov. An amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. Can J Microbiol 24, 710-715.
16. Gutié rrez, C. & Gonzá lez, C. (1972). Method for simultaneous detection of proteinase and esterase activities in extremely halophilic bacteria. Appl Microbiol 24, 516-517.
17. Gutiérrez, M. C., Castillo, A. M., Kamekura, M., Xue, Y.-F., Ma, Y.-H., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2007). Halopiger xanaduensis gen. nov., sp. nov., an extremely halophilic archaeon isolated from saline Lake Shangmatala in Inner Mongolia, China. Int J Syst Evol Microbiol 57, 1402-1407.
18. Gutié rrez, M. C., Castillo, A. M., Kamekura, M. & Ventosa, A. (2008). Haloterrigena salina sp. nov., an extremely halophilic archaeon isolated from a salt lake. Int J Syst Evol Microbiol 58, 2880-2884.
19. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
20. Inoue, K., Itoh, T., Ohkuma, M. & Kogure, K. (2011). Halomarina oriensis gen. nov., sp. nov., a halophilic archaeon isolated from a seawater aquarium. Int J Syst Evol Microbiol 61, 942-946.
21. Kates, M. (1986). Techniques of Lipidology, 2nd rev. edn, pp. 106-107, 241-246. Amsterdam: Elsevier.
22. Kumar, S., Nei, M., Dudley, J. & Tamura, K. (2008). MEGA: a biologistcentric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9, 299-306.
23. Mancinelli, R. L., Landheim, R., Sá nchez-Porro, C., Dornmayr-Pfaffenhuemer, M., Gruber, C., Legat, A., Ventosa, A., Radax, C., Ihara, K. &other authors (2009). Halorubrum chaoviator sp. nov., a haloarchaeon isolated from sea salt in Baja California, Mexico, Western Australia and Naxos, Greece. Int J Syst Evol Microbiol 59, 1908-1913.
24. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
25. McDade, J. J. & Weaver, R. H. (1959). Rapid methods for the detection of gelatin hydrolysis. J Bacteriol 77, 60-64.
26. Minegishi, H., Echigo, A., Nagaoka, S., Kamekura, M. & Usami, R. (2010). Halarchaeum acidiphilum gen. nov., sp. nov., a moderately acidophilic haloarchaeon isolated from commercial solar salt. Int J Syst Evol Microbiol 60, 2513-2516.
27. Ng, W.-L., Yang, C.-F., Halladay, J. T., Arora, A. & DasSarma, S. (1995). Protocol 25. Isolation of genomic and plasmid DNAs from Halobacterium halobium. In Archaea: a Laboratory Manual, vol. 1, pp. 179-180. Edited by S. DasSarma & E. M. Fleischmann. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
28. Oren, A., Gurevich, P., Gemmell, R. T. & Teske, A. (1995). Halobaculum gomorrense gen. nov., sp. nov., a novel extremely halophilic archaeon from the Dead Sea. Int J Syst Bacteriol 45, 747-754.
29. Oren, A., Ventosa, A. & Grant, W. D. (1997). Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47, 233-238.
30. Oren, A., Arahal, D. R. & Ventosa, A. (2009). Emended descriptions of genera of the family Halobacteriaceae. Int J Syst Evol Microbiol 59, 637-642.
31. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
32. Savage, K. N., Krumholz, L. R., Oren, A. & Elshahed, M. S. (2007). Haladaptatus paucihalophilus gen. nov., sp. nov., a halophilic archaeon isolated from a low-salt, sulfide-rich spring. Int J Syst Evol Microbiol 57, 19-24.
33. Savage, K. N., Krumholz, L. R., Oren, A. & Elshahed, M. S. (2008). Halosarcina pallida gen. nov., sp. nov., a halophilic archaeon from a low-salt, sulfide-rich spring. Int J Syst Evol Microbiol 58, 856-860.
34. Shimane, Y., Hatada, Y., Minegishi, H., Mizuki, T., Echigo, A., Miyazaki, M., Ohta, Y., Usami, R., Grant, W. D. & Horikoshi, K. (2010). Natronoarchaeum mannanilyticum gen. nov., sp. nov., an aerobic, extremely halophilic archaeon isolated from commercial salt. Int J Syst Evol Microbiol 60, 2529-2534.
35. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.