CkDREB gene in Caragana korshinskii is involved in the regulation of stress response to multiple abiotic stresses as an AP2/EREBP transcription factor

Molecular Biology Reports

Volumn 38, Issue 4, 2011, Pages 2801-2811

  Wang, Xuemin ^a   Chen, Xiaofang ^a   Liu, Yun ^b   Gao, Hongwen ^a   Wang, Zan ^a   Sun, Guizhi ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b INSTITUTE OF BOTANY   (China)

Author keywords

Caragana korshinskii; DREB; Signaling regulation; Stress tolerance

Indexed keywords

ABSCISIC ACID; COMPLEMENTARY DNA; GENOMIC DNA; MESSENGER RNA; PROTEIN EREBP; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR AP 2; UNCLASSIFIED DRUG; PHYTOHORMONE; PRIMER DNA;

ABIOTIC STRESS; AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CARAGANA; CARAGANA KORSHINSKII; CELL NUCLEUS; CONTROLLED STUDY; DEHYDRATION; DREB GENE; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE INDUCTION; GENE ISOLATION; GENE LOCATION; GENE OVEREXPRESSION; GENETIC ANALYSIS; GENETIC REGULATION; GENOME SIZE; LOW TEMPERATURE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OSMOTIC STRESS; PLANT GENE; PLANT LEAF; PROTEIN DOMAIN; PROTEIN MOTIF; SALT STRESS; SALT TOLERANCE; SIGNAL TRANSDUCTION; TOBACCO; TRANSCRIPTION INITIATION; TRANSGENIC PLANT; YEAST; DRUG EFFECT; GENETICS; METABOLISM; OSMOTIC PRESSURE; PHYSIOLOGICAL STRESS; PHYSIOLOGY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SALINITY; TWO HYBRID SYSTEM;

CARAGANA KORSHINSKII; NICOTIANA OBTUSIFOLIA;

CARAGANA; CELL NUCLEUS; DNA PRIMERS; DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION, PLANT; OPEN READING FRAMES; OSMOTIC PRESSURE; PLANT GROWTH REGULATORS; PLANTS, GENETICALLY MODIFIED; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SALINITY; STRESS, PHYSIOLOGICAL; TOBACCO; TRANSCRIPTION FACTORS; TWO-HYBRID SYSTEM TECHNIQUES;

EID: 79960135051     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0425-3     Document Type: Article

References (71)

1. Boyer JS (1982) Plant productivity and environment. Science 218:443-448. doi:10.1126/science.218.4571.443
2. Zhu T, Budworth P, Han B, Brown D, Chang HS, Zou G, Wang X (2001) Toward elucidating the global expression patterns of developing Arabidopsis: parallel analysis of 8300 genes by a high-density oligonucleotide probe array. Plant Physiol Biochem 39:221-242. doi:10.1016/S0981-9428(00)01234-1
3. Jin HC, Sun Y, Yang QC, Chao YH, Kang JM, Jin H, Li Y, Margaret G (2010) Screening of genes induced by salt stress from. Alfalfa Mol Biol Rep 37:745-753. doi:10.1007/s11033-009-9590-7
4. Shinozaki K, Yamaguchi-Shinozaki K, Seki M (2003) Regulatory network of gene expression in the drought and cold stress response. Curr Opin Plant Biol 6:410-417. doi:10.1016/S1369-5266(03)00092-X
5. Mingeot D, Dauchot N, Cutsem PV, Watillon B (2009) Characterisation of two cold induced dehydrin genes from Cichorium intybus L. Mol Biol Rep 36:1995-2001. doi:10.1007/s11033-008-9410-5
6. Zhang M, Li K, Zhang CH, Gai JY, Yu DY (2009) Identification and characterization of class 1 DXS gene encoding 1-deoxy-Dxylulose-5-phosphate synthase, the first committed enzyme of the MEP pathway from soybean. Mol Biol Rep 36:879-887. doi: 10.1007/s11033-008-9258-8
7. Lin FY, Xu JH, Shi JR, Li HW, Li B (2010) Molecular cloning and characterization of a novel glyoxalase I gene TaGly I in wheat (Triticum aestivum L.). Mol Biol Rep 37:729-735. doi: 10.1007/s11033-009-9578-3
8. Zahur M, Maqbool A, Irfan M, Barozai MYK, Qaiser U, Rashid B, Husnain T, Riazuddin S (2009) Functional analysis of cotton small heat shock protein promoter region in response to abiotic stresses in tobacco using Agrobacterium-mediated transient assay. Mol Biol Rep 36:1915-1921. doi:10.1007/s11033-008-9399-9
9. Meshi T, Iwabuchi M (1995) Plant transcription factors. Plant Cell Physiol 36(8):1405-1420
10. Xu HN, Li KZ, Yang FJ, Shi QH, Wang XF (2009) Overexpression of CsNMAPK in tobacco enhanced seed germination under salt and osmotic stresses. Mol Biol Rep. doi:10.1007/ s11033-009-9895-6
11. Duvardi MK, Kakar K, Wandrey M, Montanari O, Murray J, Andriankaja A, Zhang JY, Benedito V, Hofer JMI, Chueng F, Town CD (2007) Legume transcription factors: global regulators of plant development and response to the environment. Plant Physiol 144:538-549. doi:10.1104/pp.107.098061
12. Chen WJ, Zhu T (2004) Networks of transcription factors with roles in environmental stress response. Trends Plant Sci 9:591-596. doi:10.1016/j. tplants.2004.10.007
13. Yamaguchi-Shinozaki K, Shinozaki K (2006) Transcriptional regulatory networks in cellular response and the tolerance to dehydration and cold stresses. Annu Rev Plant Biol 57:781-803. doi:10.1146/annurev.arplant.57.032905. 105444
14. Agarwal PK, Agarwal P, Reddy MK, Sopory SK (2006) Role of DREB transcription factors in abiotic and biotic stress tolerance in plants. Plant Cell Rep 25:1263-1274. doi:10.1007/s00299-006-0204-8
15. Liu LS, Michael J, White MJ, MacRae TH (1999) Transcription factors and their genes in higher plants. Functional domains, evolution and regulation. Eur J Biochem 26:247-257. doi: 10.1046/j.1432-1327.1999.00349.x
16. Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam L, Pineda O, RatcliVe OJ, Samaha RR, Creelman R, Pilgrim M, Broun P, Zhang JZ, Ghandehari D, Sherman BK, Yu G (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290:2105-2110. doi: 10.1126/science.290.5499.2105
17. Liu QL, Xu KD, Ma N, Zeng L, Zhao LJ (2010) Isolation and functional characterization of DgZFP: a gene encoding a Cys2/ His2-type zinc finger protein in chrysanthemum. Mol Biol Rep 37:1137-1142. doi:10.1007/s11033-009-9886-7
18. Zhang GY, Chen M, Chen XP, Xu ZS, Li LC, Guo JM, Ma YZ (2010) Isolation and characterization of a novel EAR-motifcontaining gene GmERF4 from soybean (Glycine max L.). Mol Biol Rep 7:809-818. doi:10.1007/s11033-009-9616-1
19. Magnani E, Sjölander K, Hake S (2004) From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-2277. doi:10.1105/tpc.104.023 135
20. Riechmann JL, Meyerowitz EM (1998) The AP2/EREBP family of plant transcription factors. Biol Chem 379:633-646
21. Stockinger EJ, Gilmour SJ, Thomashow MF (1997) Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit. Proc Natl Acad Sci USA 94:1035-1040. doi:0027-8424/97/941035-6
22. Liu Q, Kasuga M, Sakuma Y, Abe H, Miura S, Yamaguchi-Shinozaki K, Shinozaki K (1998) Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in droughtand low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10:1391-1406
23. Dubouzet JG, Sakuma Y, Ito Y, Kasuga M, Dubouzet EG, Miura S, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Os-DREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt-and cold-responsive gene expression. Plant J 33:751-763. doi:10.1046/j.1365-313X. 2003.01661
24. Tian XH, Li XP, Zhou HL, Zhang JS, Gong ZZ, Chen SY (2005) OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element. J Integr Plant Biol 47:467-476. doi:10.1111/j.1744-7909.2005.00028
25. Li XP, Tian AG, Luo GZ, Gong ZZ, Zhang JS, Chen SY (2005) Soybean DRE-binding transcription factors that are responsive to abiotic stresses. Theor Appl Genet 110:1355-1362. doi:10.1007/ s00122-004-1867-6
26. Kizis D, Pages M (2002) Maize DRE-binding proteins DBF1 and DBF2 are involved in rab17 regulation through the drought responsive element in an ABA-dependent pathway. Plant J 30:679-689. doi:10.1046/j.1365-313X.2002.01325
27. Qin F, Sakuma Y, Liu Q, Li Y-Q, Shinozaki K, Yamaguchi-Shinozaki K (2004) Cloning and functional analysis of a novel DREB1/CBF transcription factor involved in cold-responsive gene expression in Zea mays L. Plant Cell Physiol 45:1042-1052. doi:10.1093/pcp/pch118
28. Huang B, Liu JY (2006) Cloning and functional analysis of the novel gene GhDBP3 encoding a DRE-binding transcription factor from Gossypium hirsutum. Biochim Biophys Acta 1759:263-269. doi:10.1016/j.bbaexp.2006.04.006
29. Yang YF, Wu J, Zhu K, Liu LQ, Chen FD, Yu DY (2009) Identification and characterization of two chrysanthemum (Dendronthema moriforlium) DREB genes, belonging to the AP2/ EREBP family. Mol Biol Rep 36:71-81. doi:10.1007/s11033- 007-9153-8
30. Choi DW, Rodriguez EM, Close TJ (2002) Barley Cbf3 gene identification, expression pattern, and map location. Plant Physiol 129:1781-1787. doi:10.1104/pp.003046
31. Xu ZS, Ni ZY, Li ZY, Li LC, Chen M, Gao DY, YU XD, Liu P, Ma YZ (2009) Isolation and functional characterization of HvDREB1-a gene encoding a dehydration-responsive element binding protein in Hordeum vulgare. J Plant Res 122:121-130. doi:10.1007/s10265-008-0195-3
32. Xu ZS, Ni ZY, Liu L, Nie LN, Li LC, Chen M, Ma YZ (2008) Characterization of the TaAIDFa gene encoding a CRT/DREbinding factor responsive to drought, high-salt, and cold stress in wheat. Mol Genet Genomics 280:497-508. doi:10.1007/s00438-008-0382-x
33. Zhuang J, Chen JM, Yao QH, Xiong F, Sun CC, Zhou XR, Zhang J, Xiong AS (2010) Discovery and expression profile analysis of AP2/ERF family genes from Triticum aestivum. Mol Biol Rep. doi:10.1007/s11033-010-0162-7
34. Chen JH, Xia XL, Yin WL (2009) Expression profiling and functional characterization of a DREB2-type gene from Populus euphratica. Biochem Biophys Res Commun 378:483-487. doi: 10.1016/j.bbrc.2008.11.071
35. Yamaguchi-Shinozaki K, Kasugua M, Liu Q (2002) Biological mechanisms of drought stress response. JIRCAS Working Report 23:1-8
36. Deng Z, Pang Y, Kong W, Chen Z, Wang X, Liu X, Pi Y, Sun X, Tang K (2005) A novel ABA-dependent dehydrin ERD10 gene from Brassica napus. DNA Seq 16:28-35. doi:10.1080/ 10425170500040180
37. Kiyosue T, Yamaguchi-Shinozaki K, Shinozaki K (1994) Cloning of cDNAs for genes that are early responsive to dehydration stress (ERDs) in Arabidopsis thaliana L.: identification of three ERDsas hsp cognate genes. Plant Mol Biol 25:791-798. doi: 10.1007/BF00028874
38. Wang H, Datla R, Georges F, Loewen M, Cutler AJ (1995) Promoters from kin1 and cor6.6, two homologous Arabidopsis thaliana genes: transcriptional regulation and gene expression induced by low temperature, ABA osmoticum and dehydration. Plant Mol Biol 28:605-617. doi:10.1007/BF00021187
39. Yamaguchi-Shinozaki K, Shinozaki K (1994) A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low temperature, or high-salt stress. Plant Cell 6: 251-264
40. Liu Q, Zhao NM, Yamaguch-Shinozaki K, Shinozaki K (2000) Regulatory role of DREB transcription factors in plant drought, salt and cold-tolerance. Chin Sci Bull 45:11-16. doi:10.1007/ BF02884972
41. Sakuma Y, Liu Q, Dubouzet JG, Abe H, Shinozaki K, Yamaguchi-Shinozaki K (2002) DNA-binding specificity of the ERF/ AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration-and cold-inducible gene expression. Biochem Biophys Res Commun 290:998-1009. doi:10.1006/ bbrc.2001.6299
42. Liu Y, Zhao TJ, Liu JM, Liu WQ, Liu Q, Yan YB, Zhou HM (2006) The conserved Ala37 in the ERF/AP2 domain is essential for binding with the DRE element and the GCC box. FEBS Lett 580:1303-1308. doi:10.1016/j.febslet.2006.01. 048
43. Shinwari ZK, Nakashima K, Miura S, Kasuga M, Seki M, Yamaguchi-Shinozaki K, Shinozaki K (1998) An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature-responsive gene expression. Biochem Biophys Res Commun 250:161-170. doi:10.1006/bbrc.1998.9267
44. Nakashima K, Shinwari ZK, Sakuma Y, Seki M, Miura S, Shinozaki K, Yamaguchi-Shinozaki K (2000) Organization and expression of two Arabidopsis DREB2 genes encoding DREbinding proteins involved in dehydration-and high-salinityresponsive gene expression. Plant Mol Biol 42:657-665. doi: 10.1023/A:1006321900483
45. Hong JP, Kim WT (2005) Isolation and functional characterization of the Ca-DREBLP1 gene encoding a dehydration-responsive element binding-actor-like protein in hot pepper (Capsicum annuum L. cv. Pukang). Planta 220:875-888. doi:10.1007/s00 425-004-1412-5
46. Shen YG, Zhang WK, He SJ, Zhang JS, Liu Q, Chen SY (2003) An EREBP/AP2-type protein in Triticum aestivum was a DREbinding transcription factor induced by cold, dehydration and ABA stress. Theor Appl Genet 106:923-930. doi:10.1007/ s00122-002-1131-x
47. Zhuang J, Xiong AS, Peng RH, Gao F, Zhu B, Zhang J, Fu XY, Jin XF, Chen JM, Zhang Z, Qiao YS, Yao QH (2009) Analysis of Brassica rapa ESTs: gene discovery and expression patterns of AP2/ERF family genes. Mol Biol Rep 37:2485-2492. doi: 10.1007/s11033-009-9763-4
48. Oh SJ, Song SI, Kim YS, Jang H-J, Kim SY, Kim M, Kim YK, Nahm BH, Kim JK (2005) Arabidopsis CBF3/DREB1A and ABF3 in transgenic rice increased tolerance to abiotic stress without stunting growth. Plant Physiol 138:341-351. doi: 10.1104/pp.104.059147
49. Gao SQ, Chen M, Xia LQ, Xiu HJ, Xu ZS, Li LC, Zhan CP, Cheng XG, Ma YZ (2009) A cotton (Gossypium hirsutum) DREbinding transcription factor gene, GhDREB, confers enhanced tolerance to drought, high salt, and freezing stresses in transgenic wheat. Plant Cell Rep 28:301-311. doi:10.1007/s00299-008-0623-9
50. Gilmour SJ, Sebolt AM, Salazar MP, Everard JD, Thomashow MF (2000) Overexpression of Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation. Plant Physiol 124:1854-1865
51. Haake V, Cook D, Riechmann JL, Pineda O, Thomashow MF, Zhang JZ (2002) Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis. Plant Physiol 130:639-648. doi:10.1104/pp.006478
52. James VA, Neibaur I, Altpeter F (2008) Stress inducible expression of the DREB1A transcription factor from xeric, Hordeum spontaneum L. in turf and forage grass (Paspalum notatum Flugge) enhances abiotic stress tolerance. Transgenic Res 17:93-104. doi:10.1007/s11248-007-9086-y
53. Kasuga M, Miura S, Shinozaki K, Yamaguchi-Shinozaki K (2004) A combination of the Arabidopsis DREB1A gene and stress-inducible rd29A promoter improved drought-and lowtemperature stress tolerance in tobacco by gene transfer. Plant Cell Physiol 45:346-350. doi:10.1093/pcp/pch037
54. Agarwal P, Agarwal PK, Joshi AJ, Sopory SK, Reddy MK (2009) Over-expression of PgDREB2A transcription factor enhances abiotic stress tolerance and activates downstream stress-responsive genes. Mol Biol Rep. doi:10.1007/s11033-009-9885-8
55. Fu HC (1989) Caragana. In: Fu HC (ed) Flora intramongolica, 2nd edn. Inner Mongolia People Press, Huhhot, China, pp 236-238
56. Zhang XS (1994) Principles and optimal models for development of Maowusu sandy grassland. Acta Phytoecol Sin 18:1-16
57. Wang Z, Gao HW, Wu YQ, Han JG (2007) Genetic diversity and population structure of Caragana korshinskii revealed by AFLP. Crop Sci 47:1737-1743. doi:10.2135/cropsci2006.09.0562
58. Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321-4325
59. Horsch RB, Fry JE, Hoffmann N, Wallroth M, Eichholtz D, Rogers SG, Fraley RT (1985) A Simple and general method for transferring genes into plants. Science 227:1229-1231. doi: 10.1126/science.227.4691.1229
60. Allen MD, Yamasaki K, Ohme-Takagi M, Tateno M, Suzuki M (1998) A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. EMBO J 17:5484-5496. doi: 10.1093/emboj/17.18.5484
61. Leung J, Giraudat J (1998) Abscisic acid signal transduction. Annu Rev Plant Physiol Plant Mol Biol 49:199-222. doi: 10.1146/annurev.arplant.49.1.199
62. Jaglo-Ottosen KR, Gilmour SJ, Zarka DG, Schabenberger O, Thomashow MF (1998) Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science 280:104-106. doi:10.1126/science.280.5360.104
63. Cao ZF, Li J, Chen F, Li YQ, Zhou HM, Liu Q (2001) Effect of two conserved amino acid residues on DREB1A function. Biochemistry 66:623-627. doi:10.1023/A:1010251129429
64. Courey AJ, Tjian R (1988) Analysis of Spl in vivo reveals multiple transcriptional domains, including a novel glutaminerich activation motif. Cell 55:887-898. doi:10.1016/0092-8674(88)90144-4
65. Bruhn L, Hwang-Shum JJ, GF, Sprague Jr (1992) The N-Terminal 96 residues of MCM1, a regulator of cell type-specific genes in Saccharomyces cerevisiae, are sufficient for DNA binding, transcription activation, and interaction with a1. Mol Cell Biol 12:3563-3572. doi:0270-7306/92/083563-10
66. Liu N, Zhong NQ, Wang GL (2007) Cloning and functional characterization of PpDBF1 gene encoding a DRE-binding transcription factor from Physcomitrella patens. Planta 226: 827-838. doi:10.1007/s00425-007-0529-8
67. Zeevaart JAD, Creelman R (1988) Metabolism and physiology of abscisic acid. Annu Rev Plant Physiol Plant Mol Biol 39:439-473. doi:10.1146/annurev.pp. 39.060188.002255
68. Egawa C, Kobayashi F, Ishibashi M, Nakamura T, Nakamura C, Takumi S (2006) Differential regulation of transcript accumulation and alternative splicing of a DREB2 homolog under abiotic stress conditions in common wheat. Genes Genet Syst 81:77-91. doi:10.1266/ggs.81.77
69. Kasuga M, Liu Q, Miura S, Yamaguchi-Shinozaki K, Shinozaki K (1999) Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Nat Biotechnol 17:287-291. doi:10.1038/7036
70. Sakuma Y, Maruyama K, Osakabe Y, Qin F, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2006) Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought responsive gene expression. Plant Cell 18:1292-1309. doi: 10.1105/tpc.105.035881
71. Agarwal P, Agarwal PK, Nair S, Sopory SK, Reddy MK (2007) Stress-inducible DREB2A transcription factor from Pennisetum glaucum is a phosphoprotein and its phosphorylation negatively regulates its DNA-binding activity. Mol Genet Genomics 277:189-198. doi:10.1007/s00438-006-0183-z