Origin and diversification dynamics of self-incompatibility haplotypes

Genetics

Volumn 188, Issue 3, 2011, Pages 625-636

  Gervai, Camille E ^a   Castric, Vincent ^a   Ressayre, Adrienne ^b   Billiard, Sylvain ^a  

^a UNIV LILLE   (France)

^b CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

PISTIL PROTEIN; POLLEN PROTEIN; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ALLELE; ARABIDOPSIS; ARTICLE; GENE LOCUS; GENE MUTATION; GENETIC POLYMORPHISM; GENOTYPE; HAPLOTYPE; PLANT BREEDING; PLANT GENE; POLLINATION; PRIORITY JOURNAL; SELF INCOMPATIBILITY;

ALLELES; BIOLOGICAL EVOLUTION; FLOWERS; GENE FREQUENCY; GENETIC VARIATION; GENETICS, POPULATION; GENOME, PLANT; GENOTYPE; HAPLOTYPES; MODELS, GENETIC; MUTATION; PLANTS; POLLEN; POLLINATION; SELF-FERTILIZATION;

EID: 79960111012     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.111.127399     Document Type: Article

References (43)

1. Billiard, S., M. Lopez-Villavicencio, B. Devier, M. Hood, C. Fairhead, and T. Giraud, 2011 Having sex, yes, but with whom? Inferences from fungi on the evolution of anisogamy and mating types. Biol. Rev. 86: 421-442.
2. Castric, V., and X. Vekemans, 2007 Evolution under strong balancing selection: how many codons determine specificity at the female self-incompatibility gene SRK in Brassicaceae. BMC Evol. Biol. 7: 132.
3. Castric, V., J. S. Bechsgaard, S. Grenier, R. Noureddine, M. H. Schierup et al., 2010 Molecular evolution within and between self-incompatibility specificities. Mol. Biol. Evol. 27: 11-20.
4. Charlesworth, D., 2000 How can two-gene models of selfincompatibility generate new specificities? Plant Cell 12: 309-310.
5. Charlesworth, D., and B. Charlesworth, 1979 Evolution and breakdown of S-allele systems. Heredity 43: 41-55.
6. Chookajorn, T., A. Kachroo, D. Ripoll, A. Clark, and J. Nasrallah, 2004 Specificity determinants and diversification of the Brassica self-incompatibility pollen ligand. Proc. Natl. Acad. Sci. USA 101: 911-917.
7. de Nettancourt, D., 2001 Incompatibility and Incongruity in Wild and Cultivated Plants. Springer-Verlag, Berlin.
8. Fisher, R. A., 1961 A model for the generation of self-sterility alleles. J. Theor. Biol. 1: 411-414.
9. Igic, B., W. A. Smith, K. A. Robertson, B. A. Schaal, and J. R. Kohn, 2007 Studies of self-incompatibility in wild tomatoes: I. S-allele diversity in Solanum chilense (Dun.) Reiche (Solanaceae). Heredity 99: 562.
10. Igic, B., R. Lande, and J. R. Kohn, 2008 Loss of self-incompatibility and its evolutionary consequences. Int. J. Plant Sci. 169: 93-104.
11. Lawrence, M., 2000 Population genetics of the homomorphic selfincompatibility polymorphisms in flowering plants. Ann. Bot. 85: 221-226.
12. Lewis, D., 1949 Structure of the incompatibility gene. Heredity 3: 339-355.
13. Llaurens, V., L. Gonthier, and S. Billiard, 2009 The sheltered genetic load linked to the S locus in plants: new insights from theoretical and empirical approaches in sporophytic selfincompatibility. Genetics 183: 1105-1118.
14. Matton, D., D. Luu, Q. Xike, G. Laublin, M. O'Brien et al., 1999 Production of an S RNase with dual specificity suggests a novel hypothesis for the generation of new S alleles. Plant Cell 11: 2087-2097.
15. May, G., F. Shaw, H. Badrane, and X. Vekemans, 1999 The signature of balancing selection: fungal mating compatibility gene evolution. Proc. Natl. Acad. Sci. USA 96: 9172-9177.
16. Miller, J. S., R. A. Levin, and N. M. Feliciano, 2008 A tale of two continents: Baker's rule and the maintenance of selfincompatibility in Lycium (Solanaceae). Evolution 62: 1052-1065.
17. Morlon, H., M. D. Potts, and J. B. Plotkin, 2010 Inferring the dynamics of diversification: a coalescent approach. PLoS Biol. 8: e1000493.
18. Nasrallah, M., P. Liu, and J. Nasrallah, 2002 Generation of selfincompatible Arabidopsis thaliana by transfer of two S locus genes from A. lyrata. Science 297: 247-249.
19. Nunes, M. D. S., R. A. M. Santos, S. M. Ferreira, J. Vieira, and C. P. Vieira, 2006 Variability patterns and positively selected sites at the gametophytic self-incompatibility pollen SFB gene in a wild self-incompatible Prunus spinosa (Rosaceae) population. New Phytol. 172: 577-587.
20. Ortega, E., R. I. Boskovic, D. J. Sargent, and K. R. Tobutt, 2006 Analysis of S-RNase alleles of almond (Prunus dulcis): characterization of new sequences, resolution of synonyms and evidence of intragenic recombination. Mol. Genet. Genomics 276: 577.
21. Paape, T., B. Igic, S. D. Smith, R. Olmstead, L. Bohs et al., 2008 A 15-Myr-old genetic bottleneck. Mol. Biol. Evol. 25: 655-663.
22. Phadke, S. S., and R. A. Zufall, 2009 Rapid diversification of mating systems in ciliates. Biol. J. Linn. Soc. 98: 187-197.
23. Porcher, E., and R. Lande, 2005 Loss of gametophytic selfincompatibility with evolution of inbreeding depression. Evolution 59: 46-60.
24. Quental, T. B., and C. R. Marshall, 2010 Diversity dynamics: molecular phylogenies need the fossil record. Trends Ecol. Evol. 25: 434-441.
25. Sainudiin, R., W. Wong, K. Yogeeswaran, J. Nasrallah, Z. Yang et al., 2005 Detecting site-specific physicochemical selective pressures: applications to the class-I HLA of the human major histocompatibility complex and the SRK of the plant sporophytic self-incompatibility system. J. Mol. Evol. 60: 315-326.
26. Savage, A., and J. Miller, 2006 Gametophytic self-incompatibility in Lycium parishii (Solanaceae): allelic diversity, genealogical structure, and patterns of molecular evolution at the S-RNase locus. Heredity 96: 434-444.
27. Schierup, M., A. Mikkelsen, and J. Hein, 2001 Recombination, balancing selection and phylogenies in MHC and self-incompatibility genes. Genetics 159: 1833-1844.
28. Solberg, O. D., S. J. Mack, A. K. Lancastera, R. M. Single, Y. Tsai et al., 2008 Balancing selection and heterogeneity across the classical human leukocyte antigen loci: a meta-analytic review of 497 population studies. Hum. Immunol. 69: 443-464.
29. Stone, J., 2004 Sheltered load associated with S-alleles in Solanum carolinense. Heredity 92: 335-342.
30. Takahata, N., 1990 A simple genealogical structure of strongly balanced allelic lines and transspecies evolution of polymorphism. Proc. Natl. Acad. Sci. USA 87: 2419-2423.
31. Takayama, S., and A. Isogai, 2005 Self-incompatibility in plants. Annu. Rev. Plant Biol. 56: 467-489.
32. Takebayashi, N., P. Brewer, E. Newbigin, and M. Uyenoyama, 2003 Patterns of variation within self-incompatibility loci. Mol. Biol. Evol. 20: 1778-1794.
33. Tsuchimatsu, T., K. Suwabe, R. Shimizu-Inatsugi, S. Isokawa, P. Pavlidis et al., 2010 Evolution of self-compatibility by a mutation in the male specificity gene. Nature 464: 1342-1346.
34. Uyenoyama, M., 1988a On the evolution of genetic incompatibility systems 2. Initial increase of strong gametophytic selfincompatibility under partial selfing and half-sib mating. Am. Nat. 131: 700-722.
35. Uyenoyama, M., 1988b On the evolution of genetic incompatibility systems 3. Introduction of weak gametophytic self-incompatibility under partial inbreeding. Theor. Popul. Biol. 34: 47-91.
36. Uyenoyama, M., 1997 Genealogical structure among alleles regulating self-incompatibility in natural populations of flowering plants. Genetics 147: 1389-1400.
37. Uyenoyama, M., and E. Newbigin, 2000 Evolutionary dynamics of dual-specificity self-incompatibility alleles. Plant Cell 12: 310-312.
38. Uyenoyama, M., Y. Zhang, and E. Newbigin, 2001 On the origin of self-incompatibility haplotypes: transition through selfcompatible intermediates. Genetics 157: 1805-1817.
39. Vekemans, X., and M. Slatkin, 1994 Gene and allelic genealogies at a gametophytic self-incompatibility locus. Genetics 137: 1157-1165.
40. Vieira, C., D. Charlesworth, and J. Vieira, 2003 Evidence for rare recombination at the gametophytic self-incompatibility locus. Heredity 91: 262-267.
41. Wang, X., A. Hughes, T. Tsukamoto, T. Ando, and T. Kao, 2001 Evidence that intragenic recombination contributes to allelic diversity of the S-RNase gene at the self-incompatibility (S) locus in Petunia inflata. Plant Physiol. 125: 1012-1022.
42. Wolfram Research, 2008 Mathematica Edition: Version 7.0. Wolfram Research. http://www.wolfram.com/.
43. Wright, S., 1939 The distribution of self-sterility alleles in populations. Genetics 24: 538-552.