A doubled haploid rye linkage map with a QTL affecting α-amylase activity

Journal of Applied Genetics

Volumn 52, Issue 3, 2011, Pages 299-304

  Tenhola Roininen, Teija ^a   Kalendar, Ruslan ^b   Schulman, Alan H ^a,b   Tanhuanpää, Pirjo ^a  

^a FINNISH FOREST RESEARCH INSTITUTE   (Finland)

^b UNIVERSITY OF HELSINKI   (Finland)

Author keywords

Microsatellite; Pre harvest sprouting; Retrotransposon; Secale cereale L.; Segregation distortion; Sequence related amplified polymorphism

Indexed keywords

AMYLASE; MICROSATELLITE DNA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BREEDING; CHROMOSOME MAP; GENE EXPRESSION REGULATION; GENETIC LINKAGE; GENETICS; HAPLOIDY; METABOLISM; QUANTITATIVE TRAIT LOCUS; RANDOM AMPLIFIED POLYMORPHIC DNA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RETROPOSON; RYE;

ALPHA-AMYLASES; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; BREEDING; CHROMOSOME MAPPING; GENE EXPRESSION REGULATION, PLANT; GENETIC LINKAGE; HAPLOIDY; MICROSATELLITE REPEATS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; QUANTITATIVE TRAIT LOCI; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; RETROELEMENTS; SECALE CEREALE;

SECALE CEREALE;

EID: 79960086828     PISSN: 12341983     EISSN: None     Source Type: Journal    
DOI: 10.1007/s13353-011-0029-1     Document Type: Article

References (39)

1. Bednarek PT, Masojć P, Lewandowska R, Myśków B (2003) Saturating rye genetic map with amplified fragment length polymorphism (AFLP) and random amplified polymorphic DNA (RAPD) markers. J Appl Genet 44: 21-33.
2. Bolibok H, Gruszczyńska A, Hromada-Judycka A, Rakoczy-Trojanowska M (2007) The identification of QTLs associated with the in vitro response of rye (Secale cereale L.). Cell Mol Biol Lett 12: 523-535.
3. Chono M, Honda I, Shinoda S, Kushiro T, Kamiya Y, Nambara E, Kawakami N, Kaneko S, Watanabe Y (2006) Field studies on the regulation of abscisic acid content and germinability during grain development of barley: molecular and chemical analysis of pre-harvest sprouting. J Exp Bot 57: 2421-2434.
4. Forster BP, Thomas WTB (2004) Doubled haploids in genetics and plant breeding. Plant Breed Rev 25: 57-88.
5. Hackauf B, Wehling P (2002a) Development of microsatellite markers in rye: map construction. In: Osiński R (ed) Proceedings of the EUCARPIA Rye Meeting, Plant Breeding and Acclimatization Institute, Radzikow, Poland, 4-7 July 2001, pp 333-340.
6. Hackauf B, Wehling P (2002b) Identification of microsatellite polymorphisms in an expressed portion of the rye genome. Plant Breed 121: 17-25.
7. Hackauf B, Wehling P (2003) Development of microsatellite markers in rye: map construction. Plant Breed Seed Sci 48: 143-151.
8. Hackauf B, Rudd S, van der Voort JR, Miedaner T, Wehling P (2009) Comparative mapping of DNA sequences in rye (Secale cereale L.) in relation to the rice genome. Theor Appl Genet 118: 371-384.
9. Hagberg S (1960) A rapid method for determining alpha-amylase activity. Cereal Chem 37: 218-222.
10. Humphreys DG, Noll J (2002) Methods for characterization of preharvest sprouting resistance in a wheat breeding program. Euphytica 126: 61-65.
11. Kalendar R, Schulman AH (2006) IRAP and REMAP for retrotransposon-based genotyping and fingerprinting. Nat Protoc 1: 2478-2484.
12. Kalendar R, Grob T, Regina M, Suoniemi A, Schulman A (1999) IRAP and REMAP: two new retrotransposon-based DNA fingerprinting techniques. Theor Appl Genet 98: 704-711.
13. Khlestkina EK, Than MHM, Pestsova EG, Röder MS, Malyshev SV, Korzun V, Börner A (2004) Mapping of 99 new microsatellite-derived loci in rye (Secale cereale L.) including 39 expressed sequence tags. Theor Appl Genet 109: 725-732.
14. Khlestkina EK, Than MHM, Pestsova EG, Röder MS, Malyshev SV, Korzun V, Börner A (2005) Erratum. Mapping of 99 new microsatellite-derived loci in rye (Secale cereale L.) including 39 expressed sequence tags. Theor Appl Genet 110: 990-991.
15. Korzun V, Malyshev S, Voylokov AV, Börner A (2001) A genetic map of rye (Secale cereale L.) combining RFLP, isozyme, protein, microsatellite and gene loci. Theor Appl Genet 102: 709-717.
16. Kosambi DD (1944) The estimation of map distance from recombination values. Ann Eugen 12: 172-175.
17. Kubaláková M, Valárik M, Bartoš J, Vrána J, Číhalíková J, Molnár-Láng M, Doležel J (2003) Analysis and sorting of rye (Secale cereale L.) chromosomes using flow cytometry. Genome 46: 893-905.
18. Li G, Quiros CF (2001) Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 103: 455-461.
19. Masojć P, Milczarski P (2005) Mapping QTLs for α-amylase activity in rye grain. J Appl Genet 46: 115-123.
20. Masojć P, Milczarski P (2009) Relationship between QTLs for preharvest sprouting and alpha-amylase activity in rye grain. Mol Breed 23: 75-84.
21. Melchinger AE, Utz HF, Schön CC (1998) Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics 149: 383-403.
22. Masojć P, Milczarski P, Myśków B (1999) Identification of genes underlying sprouting resistance in rye. In: Weipert D (ed) Eighth International Symposium on Pre-Harvest Sprouting in Cereals 1998, poster presentation. Association of Cereal Research, Federal Centre for Cereal, Potato and Lipid Research, Detmold, Germany, pp 131-136.
23. Masojć P, Banek-Tabor A, Milczarski P, Twardowska M (2007) QTLs for resistance to preharvest sprouting in rye (Secale cereale L.). J Appl Genet 48: 211-217.
24. Masojć P, Lebiecka K, Milczarski P, Wiśniewska M, Łań A, Owsianicki R (2009) Three classes of loci controlling preharvest sprouting in rye (Secale cereale L.) discerned by means of bidirectional selective genotyping (BSG). Euphytica 170: 123-129.
25. Nyachiro JM, Clarke FR, DePauw RM, Knox RE, Armstrong KC (2002) Temperature effects on seed germination and expression of seed dormancy in wheat. Euphytica 126: 123-127.
26. Perten H (1964) Application of the falling number method for evaluating alpha-amylase activity. Cereal Chem 41: 127-140.
27. Ramsay L, Macaulay M, degli Ivanissevich S, MacLean K, Cardle L, Fuller J, Edwards KJ, Tuvesson S, Morgante M, Massari A, Maestri E, Marmiroli N, Sjakste T, Ganal M, Powell W, Waugh R (2000) A simple sequence repeat-based linkage map of barley. Genetics 156: 1997-2005.
28. Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier M-H, Leroy P, Ganal MW (1998) A microsatellite map of wheat. Genetics 149: 2007-2023.
29. Saal B, Wricke G (1999) Development of simple sequence repeat markers in rye (Secale cereale L.). Genome 42: 964-972.
30. Saal B, Wricke G (2002) Clustering of amplified fragment length polymorphism markers in a linkage map of rye. Plant Breed 121: 117-123.
31. Saghai Maroof MA, Biyashev RM, Yang GP, Zhang Q, Allard RW (1994) Extraordinarily polymorphic microsatellite DNA in barley: Species diversity, chromosomal locations, and population dynamics. Proc Natl Acad Sci USA 91: 5466-5470.
32. Schulman AH, Flavell AJ, Ellis THN (2004) The application of LTR retrotransposons as molecular markers in plants. In: Miller WJ, Capy P (eds) Mobile genetic elements and their application in genomics. Humana Press, Totawa, NJ, pp 145-173.
33. Tenhola-Roininen T (2009) Rye doubled haploids-production and use in mapping studies. Dissertation, Studies in Biological and Environmental Science, no. 198, University of Jyväskylä, Finland.
34. Tenhola-Roininen T, Tanhuanpää P (2010) Tagging the dwarfing gene Ddw1 in a rye population derived from doubled haploid parents. Euphytica 172: 303-312.
35. Tenhola-Roininen T, Immonen S, Tanhuanpää P (2006) Rye doubled haploids as a research and breeding tool-a practical point of view. Plant Breed 125: 584-590.
36. Tinker NA, Mather DE (1995) MQTL: software for simplified composite interval mapping of QTL in multiple environments. J Agric Genomics 1: 2.
37. Twardowska M, Masojć P, Milczarski P (2005) Pyramiding genes affecting sprouting resistance in rye by means of marker assisted selection. Euphytica 143: 257-260.
38. van Ooijen JW, Voorrips RE (2001) JoinMap® version 3. 0: Software for the calculation of genetic linkage maps. Plant Research International, Wageningen, the Netherlands.
39. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414.